Wall clock time and date at job start Wed Apr 1 2020 03:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00391 * 2 1 4 4 H 1.48503 * 109.47020 * 239.99869 * 3 2 1 5 5 H 1.48503 * 109.47020 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47115 * 119.99712 * 3 2 1 7 7 C 1.38813 * 119.99631 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99892 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00281 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00168 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.47059 * 34.99626 * 10 9 7 12 12 C 1.52999 * 109.47147 * 154.99878 * 10 9 7 13 13 N 1.46503 * 109.47009 * 304.99728 * 12 10 9 14 14 C 1.34779 * 119.99838 * 179.97438 * 13 12 10 15 15 O 1.21283 * 120.00092 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99929 * 179.97438 * 14 13 12 17 17 S 1.81397 * 109.47254 * 180.02562 * 16 14 13 18 18 O 1.42099 * 108.57771 * 65.51617 * 17 16 14 19 19 O 1.42103 * 108.57985 * 294.49005 * 17 16 14 20 20 C 1.81398 * 101.92179 * 180.02562 * 17 16 14 21 21 C 1.54961 * 110.92525 * 66.54120 * 20 17 16 22 22 C 1.54270 * 104.16191 * 156.29525 * 21 20 17 23 23 C 1.53869 * 106.63967 * 336.44607 * 22 21 20 24 24 C 1.54268 * 106.60115 * 359.97438 * 23 22 21 25 25 C 1.53000 * 109.47113 * 274.99617 * 10 9 7 26 26 C 1.52996 * 117.49890 * 128.74451 * 25 10 9 27 27 C 1.53004 * 117.49640 * 60.08614 * 25 10 9 28 28 H 0.97001 * 119.99815 * 0.02562 * 1 2 3 29 29 H 0.97004 * 120.00280 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.47227 * 185.00090 * 12 10 9 31 31 H 1.08997 * 109.47323 * 64.99769 * 12 10 9 32 32 H 0.97002 * 119.99957 * 0.02562 * 13 12 10 33 33 H 1.09007 * 109.47029 * 59.99865 * 16 14 13 34 34 H 1.09003 * 109.47397 * 300.00657 * 16 14 13 35 35 H 1.09001 * 110.67506 * 303.23275 * 20 17 16 36 36 H 1.08997 * 110.47708 * 37.64123 * 21 20 17 37 37 H 1.09002 * 110.53308 * 274.97515 * 21 20 17 38 38 H 1.09002 * 110.03399 * 217.13605 * 22 21 20 39 39 H 1.08995 * 110.02943 * 95.75505 * 22 21 20 40 40 H 1.08999 * 110.03405 * 119.26051 * 23 22 21 41 41 H 1.09001 * 110.03705 * 240.64196 * 23 22 21 42 42 H 1.08997 * 110.48788 * 142.28685 * 24 23 22 43 43 H 1.09000 * 110.48806 * 264.79985 * 24 23 22 44 44 H 1.08993 * 115.54967 * 274.41884 * 25 10 9 45 45 H 1.09005 * 117.49771 * 0.02562 * 26 25 10 46 46 H 1.08998 * 117.49768 * 145.01875 * 26 25 10 47 47 H 1.08995 * 117.49677 * 214.97563 * 27 25 10 48 48 H 1.08998 * 117.49885 * 0.02562 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 1 2.9686 -3.5506 0.5899 12 6 1.1807 -4.7522 0.6102 13 7 0.7342 -4.3355 1.9418 14 6 -0.0557 -5.1472 2.6724 15 8 -0.3964 -6.2229 2.2275 16 6 -0.5145 -4.7189 4.0424 17 16 -1.5547 -6.0174 4.7652 18 8 -0.7538 -7.1711 4.9812 19 8 -2.7405 -6.1311 3.9906 20 6 -1.9835 -5.3010 6.3756 21 6 -2.8814 -4.0498 6.2033 22 6 -3.6330 -3.9368 7.5457 23 6 -3.6381 -5.3442 8.1676 24 6 -2.8898 -6.2646 7.1813 25 6 2.4217 -4.0357 -1.4365 26 6 3.8819 -4.3893 -1.7258 27 6 3.3026 -3.0623 -2.2223 28 1 -0.4850 0.8401 -0.0004 29 1 0.3554 -2.3881 0.0005 30 1 1.7556 -5.6746 0.6919 31 1 0.3131 -4.9200 -0.0279 32 1 1.0064 -3.4750 2.2975 33 1 -1.0888 -3.7959 3.9611 34 1 0.3533 -4.5517 4.6805 35 1 -1.0836 -5.0551 6.9394 36 1 -3.5847 -4.1951 5.3833 37 1 -2.2719 -3.1625 6.0315 38 1 -4.6556 -3.6008 7.3740 39 1 -3.1168 -3.2391 8.2050 40 1 -3.1237 -5.3298 9.1284 41 1 -4.6632 -5.6910 8.2985 42 1 -2.2861 -6.9931 7.7225 43 1 -3.5948 -6.7699 6.5212 44 1 1.6538 -4.5775 -1.9885 45 1 4.5833 -4.3524 -0.8922 46 1 4.0746 -5.1635 -2.4684 47 1 3.1145 -2.9641 -3.2914 48 1 3.6233 -2.1522 -1.7153 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752472540.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:51 Heat of formation + Delta-G solvation = -80.125000 kcal Electronic energy + Delta-G solvation = -28475.884449 eV Core-core repulsion = 24465.911435 eV Total energy + Delta-G solvation = -4009.973014 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -39.62845 -38.32171 -37.62676 -36.97917 -36.00333 -34.80734 -33.50887 -31.49642 -30.43806 -29.47274 -29.12533 -27.76140 -23.83563 -22.58576 -21.80678 -21.71761 -20.83930 -20.46071 -19.61606 -18.84925 -17.78005 -17.46313 -16.82791 -16.44697 -16.24057 -15.96415 -15.25999 -15.22432 -14.95834 -14.49658 -14.40383 -14.02505 -13.90138 -13.73153 -13.34826 -13.24425 -13.04388 -12.81623 -12.10605 -12.07380 -12.00323 -11.92294 -11.72083 -11.57830 -11.45867 -11.41272 -11.24793 -11.10518 -10.93846 -10.90980 -10.81702 -10.78895 -10.51998 -10.22520 -10.13722 -9.98348 -9.58111 -9.36328 -9.05664 -8.83667 -7.13582 -5.89346 -3.19465 -0.22224 2.58235 2.61420 3.09161 3.33537 3.39412 3.40519 3.60532 3.78183 4.02404 4.17038 4.35363 4.39729 4.53075 4.61160 4.69628 4.84461 4.89321 4.96337 5.08210 5.10688 5.15527 5.27260 5.30934 5.39426 5.46014 5.51742 5.54641 5.62218 5.67605 5.68539 5.71382 5.83183 5.91502 5.92266 6.01543 6.12868 6.31228 6.47872 6.52875 6.69087 6.74723 6.92369 7.57002 7.61482 8.23705 8.27669 9.39578 9.92949 10.29416 11.32233 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012249 B = 0.002844 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.284068 B = 9842.646293 C =11690.122367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.008 4.008 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.193 3.807 11 H 0.057 0.943 12 C 0.114 3.886 13 N -0.697 5.697 14 C 0.538 3.462 15 O -0.543 6.543 16 C -0.658 4.658 17 S 2.455 3.545 18 O -0.924 6.924 19 O -0.917 6.917 20 C -0.590 4.590 21 C -0.113 4.113 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.103 4.103 25 C -0.160 4.160 26 C -0.196 4.196 27 C -0.155 4.155 28 H 0.256 0.744 29 H 0.386 0.614 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.414 0.586 33 H 0.162 0.838 34 H 0.158 0.842 35 H 0.141 0.859 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.647 -8.478 14.798 17.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.205 4.205 3 Si 0.735 3.265 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.359 5.359 10 C 0.082 3.918 11 H 0.074 0.926 12 C -0.010 4.010 13 N -0.348 5.348 14 C 0.322 3.678 15 O -0.423 6.423 16 C -0.786 4.786 17 S 2.634 3.366 18 O -0.921 6.921 19 O -0.914 6.914 20 C -0.698 4.698 21 C -0.152 4.152 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.142 4.142 25 C -0.182 4.182 26 C -0.234 4.234 27 C -0.193 4.193 28 H 0.066 0.934 29 H 0.220 0.780 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.251 0.749 33 H 0.180 0.820 34 H 0.176 0.824 35 H 0.159 0.841 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.110 0.890 45 H 0.105 0.895 46 H 0.100 0.900 47 H 0.098 0.902 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.991 -9.855 14.104 17.463 hybrid contribution 0.689 2.400 0.334 2.520 sum -2.302 -7.454 14.438 16.411 Atomic orbital electron populations 1.69648 1.05052 1.25890 1.57033 1.24725 0.95445 0.97585 1.02736 0.86333 0.78582 0.83742 0.77870 1.21236 1.21732 1.21318 1.19113 0.90811 0.83813 1.43334 0.91158 1.42470 1.05849 0.99404 1.88152 1.20066 0.94295 0.86024 0.91414 0.92553 1.21753 0.99059 0.97923 0.82313 1.45827 1.49518 1.21552 1.17912 1.19025 0.79277 0.84728 0.84802 1.90831 1.57197 1.22203 1.72040 1.30837 1.17999 1.22904 1.06849 1.07339 0.76052 0.76410 0.76847 1.93563 1.70295 1.42980 1.85269 1.93574 1.45702 1.84799 1.67324 1.31441 1.08612 1.08234 1.21538 1.22353 0.97911 0.94678 1.00213 1.22079 1.00833 0.97161 0.95629 1.22102 1.00631 0.94538 0.98364 1.22172 0.97324 0.96678 0.98018 1.23014 0.92289 1.03192 0.99679 1.22968 0.97189 0.99833 1.03378 1.22784 1.03315 0.94025 0.99140 0.93367 0.78003 0.91056 0.91206 0.74877 0.81995 0.82449 0.84072 0.89143 0.89616 0.90985 0.91261 0.91282 0.91045 0.89675 0.90123 0.89021 0.89525 0.90012 0.90167 0.87719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.94 13.06 55.49 0.72 -25.21 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.90 20.87 29.55 -169.99 -5.02 15.84 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.24 -5.89 8.63 -15.06 -0.13 -6.02 16 8 H 0.07 1.69 6.91 -52.48 -0.36 1.32 16 9 N -0.72 -15.80 4.54 -53.42 -0.24 -16.05 16 10 C 0.19 3.45 2.70 -67.93 -0.18 3.27 16 11 H 0.06 1.01 7.84 -51.93 -0.41 0.60 16 12 C 0.11 1.90 5.22 -4.04 -0.02 1.88 16 13 N -0.70 -11.13 5.39 -60.29 -0.32 -11.45 16 14 C 0.54 8.78 7.85 -10.99 -0.09 8.69 16 15 O -0.54 -10.88 15.62 2.56 0.04 -10.84 16 16 C -0.66 -7.30 6.13 36.00 0.22 -7.08 16 17 S 2.46 30.63 3.57 -107.50 -0.38 30.25 16 18 O -0.92 -14.63 17.95 -59.53 -1.07 -15.70 16 19 O -0.92 -14.80 17.30 -59.52 -1.03 -15.83 16 20 C -0.59 -4.66 3.29 -24.70 -0.08 -4.74 16 21 C -0.11 -0.84 6.05 -25.03 -0.15 -0.99 16 22 C -0.12 -0.77 6.80 -25.61 -0.17 -0.95 16 23 C -0.12 -0.76 6.80 -25.62 -0.17 -0.93 16 24 C -0.10 -0.81 6.28 -25.07 -0.16 -0.97 16 25 C -0.16 -2.72 5.36 -90.62 -0.49 -3.21 16 26 C -0.20 -2.90 10.18 -26.70 -0.27 -3.18 16 27 C -0.16 -2.70 9.78 -26.69 -0.26 -2.96 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.39 9.33 7.80 -40.82 -0.32 9.01 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.41 6.34 8.14 -40.82 -0.33 6.01 16 33 H 0.16 1.39 8.07 -51.92 -0.42 0.97 16 34 H 0.16 1.12 8.14 -51.92 -0.42 0.70 16 35 H 0.14 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.74 7.50 -51.93 -0.39 0.35 16 37 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.67 8.05 -51.93 -0.42 0.25 16 44 H 0.09 1.54 8.11 -51.93 -0.42 1.12 16 45 H 0.09 1.23 8.05 -51.93 -0.42 0.81 16 46 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 48 H 0.10 2.03 6.23 -51.93 -0.32 1.70 16 LS Contribution 401.59 15.07 6.05 6.05 Total: -1.00 -34.83 401.59 -11.33 -46.16 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -8.02 Total: 14.28 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -2.05 Total: -17.50 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: 0.16 Total: -52.71 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: -2.06 Total: -42.37 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 30.63 SS G_CDS: -0.38 Total: 30.25 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.83 -11.33 -46.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752472540.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.969 kcal (2) G-P(sol) polarization free energy of solvation -34.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds