Wall clock time and date at job start Wed Apr 1 2020 03:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00391 * 2 1 4 4 H 1.48503 * 109.47020 * 239.99869 * 3 2 1 5 5 H 1.48503 * 109.47020 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47115 * 119.99712 * 3 2 1 7 7 C 1.38813 * 119.99631 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99892 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00281 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00168 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.47059 * 34.99626 * 10 9 7 12 12 C 1.52999 * 109.47147 * 154.99878 * 10 9 7 13 13 N 1.46503 * 109.47009 * 304.99728 * 12 10 9 14 14 C 1.34779 * 119.99838 * 179.97438 * 13 12 10 15 15 O 1.21283 * 120.00092 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99929 * 179.97438 * 14 13 12 17 17 S 1.81397 * 109.47254 * 180.02562 * 16 14 13 18 18 O 1.42099 * 108.57771 * 65.51617 * 17 16 14 19 19 O 1.42103 * 108.57985 * 294.49005 * 17 16 14 20 20 C 1.81398 * 101.92179 * 180.02562 * 17 16 14 21 21 C 1.54961 * 110.92525 * 66.54120 * 20 17 16 22 22 C 1.54270 * 104.16191 * 156.29525 * 21 20 17 23 23 C 1.53869 * 106.63967 * 336.44607 * 22 21 20 24 24 C 1.54268 * 106.60115 * 359.97438 * 23 22 21 25 25 C 1.53000 * 109.47113 * 274.99617 * 10 9 7 26 26 C 1.52996 * 117.49890 * 128.74451 * 25 10 9 27 27 C 1.53004 * 117.49640 * 60.08614 * 25 10 9 28 28 H 0.97001 * 119.99815 * 0.02562 * 1 2 3 29 29 H 0.97004 * 120.00280 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.47227 * 185.00090 * 12 10 9 31 31 H 1.08997 * 109.47323 * 64.99769 * 12 10 9 32 32 H 0.97002 * 119.99957 * 0.02562 * 13 12 10 33 33 H 1.09007 * 109.47029 * 59.99865 * 16 14 13 34 34 H 1.09003 * 109.47397 * 300.00657 * 16 14 13 35 35 H 1.09001 * 110.67506 * 303.23275 * 20 17 16 36 36 H 1.08997 * 110.47708 * 37.64123 * 21 20 17 37 37 H 1.09002 * 110.53308 * 274.97515 * 21 20 17 38 38 H 1.09002 * 110.03399 * 217.13605 * 22 21 20 39 39 H 1.08995 * 110.02943 * 95.75505 * 22 21 20 40 40 H 1.08999 * 110.03405 * 119.26051 * 23 22 21 41 41 H 1.09001 * 110.03705 * 240.64196 * 23 22 21 42 42 H 1.08997 * 110.48788 * 142.28685 * 24 23 22 43 43 H 1.09000 * 110.48806 * 264.79985 * 24 23 22 44 44 H 1.08993 * 115.54967 * 274.41884 * 25 10 9 45 45 H 1.09005 * 117.49771 * 0.02562 * 26 25 10 46 46 H 1.08998 * 117.49768 * 145.01875 * 26 25 10 47 47 H 1.08995 * 117.49677 * 214.97563 * 27 25 10 48 48 H 1.08998 * 117.49885 * 0.02562 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 1 2.9686 -3.5506 0.5899 12 6 1.1807 -4.7522 0.6102 13 7 0.7342 -4.3355 1.9418 14 6 -0.0557 -5.1472 2.6724 15 8 -0.3964 -6.2229 2.2275 16 6 -0.5145 -4.7189 4.0424 17 16 -1.5547 -6.0174 4.7652 18 8 -0.7538 -7.1711 4.9812 19 8 -2.7405 -6.1311 3.9906 20 6 -1.9835 -5.3010 6.3756 21 6 -2.8814 -4.0498 6.2033 22 6 -3.6330 -3.9368 7.5457 23 6 -3.6381 -5.3442 8.1676 24 6 -2.8898 -6.2646 7.1813 25 6 2.4217 -4.0357 -1.4365 26 6 3.8819 -4.3893 -1.7258 27 6 3.3026 -3.0623 -2.2223 28 1 -0.4850 0.8401 -0.0004 29 1 0.3554 -2.3881 0.0005 30 1 1.7556 -5.6746 0.6919 31 1 0.3131 -4.9200 -0.0279 32 1 1.0064 -3.4750 2.2975 33 1 -1.0888 -3.7959 3.9611 34 1 0.3533 -4.5517 4.6805 35 1 -1.0836 -5.0551 6.9394 36 1 -3.5847 -4.1951 5.3833 37 1 -2.2719 -3.1625 6.0315 38 1 -4.6556 -3.6008 7.3740 39 1 -3.1168 -3.2391 8.2050 40 1 -3.1237 -5.3298 9.1284 41 1 -4.6632 -5.6910 8.2985 42 1 -2.2861 -6.9931 7.7225 43 1 -3.5948 -6.7699 6.5212 44 1 1.6538 -4.5775 -1.9885 45 1 4.5833 -4.3524 -0.8922 46 1 4.0746 -5.1635 -2.4684 47 1 3.1145 -2.9641 -3.2914 48 1 3.6233 -2.1522 -1.7153 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752472540.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:50 Heat of formation + Delta-G solvation = -105.780209 kcal Electronic energy + Delta-G solvation = -28476.996942 eV Core-core repulsion = 24465.911435 eV Total energy + Delta-G solvation = -4011.085508 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.96206 -39.06934 -38.90470 -38.02803 -37.06781 -36.20340 -35.22726 -32.98673 -31.72466 -30.11242 -29.78217 -29.18671 -25.60007 -24.02118 -23.03009 -22.54046 -21.84851 -21.29531 -20.97681 -19.79883 -19.31791 -18.62421 -18.04052 -17.50771 -17.27921 -16.85395 -16.66794 -16.40068 -16.18144 -16.00876 -15.49402 -15.24181 -15.00900 -14.87439 -14.50797 -14.41782 -14.05891 -13.97518 -13.49020 -13.16501 -13.08765 -12.96831 -12.91353 -12.67879 -12.56880 -12.43766 -12.27278 -12.21013 -12.14694 -12.09263 -12.02602 -11.93824 -11.73520 -11.49857 -11.27059 -11.26888 -11.00384 -10.88733 -10.77744 -10.19824 -9.00221 -7.87565 -5.15723 -1.14408 1.33511 1.51217 1.53458 1.58159 1.72472 1.95093 2.58542 2.74848 2.93350 3.07278 3.31533 3.44776 3.49561 3.52933 3.76124 3.86272 3.94937 3.98876 4.15561 4.25790 4.33141 4.34278 4.35225 4.38263 4.40637 4.49040 4.53145 4.65053 4.75007 4.80260 4.82947 4.90064 5.02230 5.07212 5.11242 5.15532 5.21752 5.25554 5.36514 5.39942 5.45399 5.47786 5.62585 6.31390 6.32365 6.98066 7.40252 8.09749 8.36257 9.34778 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012249 B = 0.002844 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.284068 B = 9842.646293 C =11690.122367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.067 4.067 3 Si 0.960 3.040 4 H -0.286 1.286 5 H -0.303 1.303 6 H -0.276 1.276 7 C -0.220 4.220 8 H 0.077 0.923 9 N -0.724 5.724 10 C 0.198 3.802 11 H 0.063 0.937 12 C 0.119 3.881 13 N -0.694 5.694 14 C 0.526 3.474 15 O -0.588 6.588 16 C -0.650 4.650 17 S 2.436 3.564 18 O -0.971 6.971 19 O -0.971 6.971 20 C -0.553 4.553 21 C -0.125 4.125 22 C -0.120 4.120 23 C -0.117 4.117 24 C -0.119 4.119 25 C -0.176 4.176 26 C -0.162 4.162 27 C -0.173 4.173 28 H 0.248 0.752 29 H 0.373 0.627 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.419 0.581 33 H 0.191 0.809 34 H 0.204 0.796 35 H 0.183 0.817 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.065 0.935 44 H 0.091 0.909 45 H 0.098 0.902 46 H 0.105 0.895 47 H 0.084 0.916 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.893 -7.710 16.879 18.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.260 4.260 3 Si 0.790 3.210 4 H -0.213 1.213 5 H -0.230 1.230 6 H -0.202 1.202 7 C -0.352 4.352 8 H 0.095 0.905 9 N -0.363 5.363 10 C 0.089 3.911 11 H 0.081 0.919 12 C -0.006 4.006 13 N -0.345 5.345 14 C 0.312 3.688 15 O -0.471 6.471 16 C -0.778 4.778 17 S 2.622 3.378 18 O -0.968 6.968 19 O -0.968 6.968 20 C -0.666 4.666 21 C -0.163 4.163 22 C -0.159 4.159 23 C -0.155 4.155 24 C -0.158 4.158 25 C -0.197 4.197 26 C -0.200 4.200 27 C -0.210 4.210 28 H 0.057 0.943 29 H 0.205 0.795 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.257 0.743 33 H 0.208 0.792 34 H 0.222 0.778 35 H 0.200 0.800 36 H 0.093 0.907 37 H 0.129 0.871 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.115 0.885 43 H 0.084 0.916 44 H 0.110 0.890 45 H 0.116 0.884 46 H 0.123 0.877 47 H 0.103 0.897 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.179 -9.140 16.145 18.590 hybrid contribution 0.171 2.104 -0.294 2.132 sum -1.008 -7.036 15.851 17.372 Atomic orbital electron populations 1.69795 1.06362 1.25719 1.59743 1.25346 0.96036 1.00328 1.04269 0.85423 0.77221 0.80331 0.77996 1.21290 1.23010 1.20210 1.19406 0.91138 0.84492 1.40168 0.90469 1.42573 1.05328 1.00320 1.88110 1.20146 0.94119 0.84577 0.92247 0.91859 1.21640 0.98350 0.97971 0.82624 1.45811 1.49433 1.21659 1.17560 1.19828 0.78487 0.84027 0.86479 1.90814 1.58599 1.24170 1.73492 1.30801 1.19839 1.23051 1.04157 1.07502 0.75041 0.76765 0.78462 1.93500 1.70935 1.46104 1.86252 1.93506 1.47361 1.85975 1.69983 1.31185 1.10492 1.07991 1.16976 1.22548 0.98134 0.95082 1.00518 1.22135 1.01077 0.97508 0.95136 1.22140 1.00868 0.94003 0.98489 1.22379 0.97589 0.97445 0.98365 1.22933 0.94021 1.04014 0.98757 1.23041 0.95104 0.98291 1.03532 1.22738 1.04674 0.94332 0.99257 0.94330 0.79465 0.89824 0.92832 0.74324 0.79186 0.77834 0.79987 0.90655 0.87076 0.90864 0.89554 0.89588 0.90709 0.88521 0.91594 0.89038 0.88366 0.87686 0.89712 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -54.56 13.06 21.65 0.28 -54.28 16 2 C -0.07 -3.50 5.50 84.86 0.47 -3.04 16 3 Si 0.96 42.76 29.55 68.60 2.03 44.78 16 4 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.22 -10.66 8.63 84.03 0.73 -9.93 16 8 H 0.08 3.59 6.91 -2.91 -0.02 3.57 16 9 N -0.72 -31.65 4.54 -322.93 -1.47 -33.11 16 10 C 0.20 6.90 2.70 44.99 0.12 7.02 16 11 H 0.06 2.14 7.84 -2.39 -0.02 2.12 16 12 C 0.12 3.93 5.22 86.38 0.45 4.38 16 13 N -0.69 -21.66 5.39 -463.05 -2.50 -24.16 16 14 C 0.53 17.02 7.85 87.66 0.69 17.71 16 15 O -0.59 -24.31 15.62 -0.17 0.00 -24.31 16 16 C -0.65 -13.24 6.13 71.24 0.44 -12.80 16 17 S 2.44 60.57 3.57 -56.49 -0.20 60.37 16 18 O -0.97 -31.48 17.95 -125.74 -2.26 -33.74 16 19 O -0.97 -33.12 17.30 -125.76 -2.18 -35.29 16 20 C -0.55 -7.36 3.29 31.91 0.11 -7.26 16 21 C -0.12 -1.52 6.05 31.70 0.19 -1.32 16 22 C -0.12 -1.19 6.80 31.32 0.21 -0.98 16 23 C -0.12 -1.18 6.80 31.32 0.21 -0.97 16 24 C -0.12 -1.69 6.28 31.67 0.20 -1.49 16 25 C -0.18 -5.76 5.36 -10.79 -0.06 -5.82 16 26 C -0.16 -4.35 10.18 30.62 0.31 -4.04 16 27 C -0.17 -5.76 9.78 30.62 0.30 -5.46 16 28 H 0.25 13.90 8.31 -92.71 -0.77 13.12 16 29 H 0.37 18.25 7.80 -92.71 -0.72 17.52 16 30 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.42 12.25 8.14 -92.71 -0.75 11.49 16 33 H 0.19 2.77 8.07 -2.39 -0.02 2.75 16 34 H 0.20 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.18 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 1.18 7.50 -2.39 -0.02 1.16 16 37 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.07 1.12 8.05 -2.39 -0.02 1.10 16 44 H 0.09 3.00 8.11 -2.39 -0.02 2.98 16 45 H 0.10 2.44 8.05 -2.38 -0.02 2.42 16 46 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 47 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 48 H 0.08 3.14 6.23 -2.39 -0.01 3.12 16 Total: -1.00 -79.06 401.59 -2.43 -81.49 By element: Atomic # 1 Polarization: 42.75 SS G_CDS: -0.51 Total: 42.24 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: 4.36 Total: -24.00 kcal Atomic # 7 Polarization: -107.87 SS G_CDS: -3.68 Total: -111.55 kcal Atomic # 8 Polarization: -88.91 SS G_CDS: -4.43 Total: -93.34 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 60.57 SS G_CDS: -0.20 Total: 60.37 kcal Total: -79.06 -2.43 -81.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752472540.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.287 kcal (2) G-P(sol) polarization free energy of solvation -79.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds