Wall clock time and date at job start Wed Apr 1 2020 02:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86791 * 120.00074 * 2 1 4 4 H 1.48508 * 109.47491 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47395 * 299.99383 * 3 2 1 6 6 H 1.48506 * 109.47522 * 59.99588 * 3 2 1 7 7 C 1.38817 * 119.99637 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99500 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00381 * 0.02562 * 7 2 1 10 10 C 1.47026 * 125.64833 * 359.97438 * 9 7 2 11 11 C 1.54316 * 107.27234 * 178.97252 * 10 9 7 12 12 C 1.55150 * 102.94311 * 337.80183 * 11 10 9 13 13 H 1.08996 * 111.01047 * 277.39176 * 12 11 10 14 14 C 1.53004 * 111.00760 * 153.57882 * 12 11 10 15 15 C 1.52995 * 109.47514 * 178.18327 * 14 12 11 16 16 N 1.46494 * 109.47282 * 179.97438 * 15 14 12 17 17 C 1.34778 * 120.00296 * 179.97438 * 16 15 14 18 18 O 1.21603 * 119.99697 * 0.02562 * 17 16 15 19 19 C 1.47504 * 120.00457 * 179.97438 * 17 16 15 20 20 C 1.40158 * 119.94576 * 0.02562 * 19 17 16 21 21 C 1.36205 * 120.49469 * 180.02562 * 20 19 17 22 22 C 1.40026 * 120.08639 * 359.97438 * 21 20 19 23 23 N 1.35553 * 133.26627 * 179.97438 * 22 21 20 24 24 C 1.30920 * 109.70961 * 180.02562 * 23 22 21 25 25 O 1.35202 * 125.01567 * 179.97438 * 24 23 22 26 26 N 1.36250 * 109.97350 * 359.97438 * 24 23 22 27 27 H 0.96999 * 126.39583 * 180.02562 * 26 24 23 28 28 C 1.38557 * 107.20710 * 0.02562 * 26 24 23 29 29 C 1.38220 * 133.89976 * 179.97438 * 28 26 24 30 30 C 1.47467 * 125.63265 * 179.97438 * 9 7 2 31 31 H 0.96998 * 120.00047 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.88338 * 59.54816 * 10 9 7 33 33 H 1.09011 * 110.00794 * 298.45883 * 10 9 7 34 34 H 1.09006 * 110.71775 * 219.44062 * 11 10 9 35 35 H 1.08996 * 110.87685 * 96.23889 * 11 10 9 36 36 H 1.09003 * 109.46720 * 58.17666 * 14 12 11 37 37 H 1.09007 * 109.46808 * 298.18479 * 14 12 11 38 38 H 1.09001 * 109.46979 * 59.99629 * 15 14 12 39 39 H 1.09003 * 109.46772 * 299.99748 * 15 14 12 40 40 H 0.97006 * 120.00072 * 359.97438 * 16 15 14 41 41 H 1.08003 * 119.75858 * 359.97438 * 20 19 17 42 42 H 1.08001 * 119.96237 * 179.70135 * 21 20 19 43 43 H 0.96703 * 114.00682 * 89.96946 * 25 24 23 44 44 H 1.07991 * 120.20354 * 0.07591 * 29 28 26 45 45 H 1.08995 * 110.34656 * 85.25618 * 30 9 7 46 46 H 1.08997 * 110.40202 * 322.92282 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1376 -2.5328 0.0005 11 6 -0.4485 -4.0441 -0.0259 12 6 0.8517 -4.6562 -0.6105 13 1 0.8565 -4.5973 -1.6988 14 6 1.0368 -6.1009 -0.1418 15 6 2.3025 -6.6839 -0.7734 16 7 2.4800 -8.0669 -0.3242 17 6 3.5354 -8.7855 -0.7556 18 8 4.3407 -8.2856 -1.5174 19 6 3.7145 -10.1778 -0.3028 20 6 2.7860 -10.7527 0.5758 21 6 2.9407 -12.0373 1.0014 22 6 4.0327 -12.7957 0.5619 23 7 4.4411 -14.0648 0.8067 24 6 5.5449 -14.3086 0.1462 25 8 6.2191 -15.4803 0.1677 26 7 5.9139 -13.2073 -0.5660 27 1 6.6932 -13.1262 -1.1380 28 6 4.9683 -12.2247 -0.3209 29 6 4.8073 -10.9209 -0.7505 30 6 1.9340 -3.7314 0.0005 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5576 -2.0523 -0.8831 33 1 -0.5568 -2.0838 0.9011 34 1 -1.2986 -4.2516 -0.6759 35 1 -0.6334 -4.4202 0.9803 36 1 0.1736 -6.6941 -0.4436 37 1 1.1301 -6.1214 0.9441 38 1 3.1656 -6.0906 -0.4716 39 1 2.2091 -6.6634 -1.8593 40 1 1.8378 -8.4656 0.2839 41 1 1.9419 -10.1726 0.9185 42 1 2.2227 -12.4701 1.6822 43 1 5.9403 -16.1072 -0.5137 44 1 5.5228 -10.4801 -1.4288 45 1 2.1673 -4.0417 1.0190 46 1 2.8332 -3.7412 -0.6154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753338861.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:14 Heat of formation + Delta-G solvation = 22.477945 kcal Electronic energy + Delta-G solvation = -28138.217381 eV Core-core repulsion = 24029.542364 eV Total energy + Delta-G solvation = -4108.675017 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.71813 -40.10319 -38.54539 -37.79699 -36.71582 -35.30878 -33.79062 -33.03968 -31.07884 -30.59918 -29.67393 -28.81951 -26.59948 -24.89419 -23.89114 -23.33909 -22.31538 -22.12335 -20.94268 -19.97489 -19.61673 -19.54707 -18.46661 -17.90409 -17.05981 -16.80530 -16.17332 -15.99136 -15.70670 -15.04136 -14.77910 -14.64205 -14.55597 -14.44623 -14.10578 -13.75378 -13.68290 -13.54924 -12.62857 -12.46455 -12.30505 -12.10438 -12.03211 -11.89645 -11.80855 -11.52695 -11.30641 -11.08022 -10.84004 -10.75785 -10.58923 -10.23771 -10.09645 -9.93576 -9.82433 -9.73644 -9.58729 -9.19112 -8.99936 -8.63086 -8.55987 -6.77492 -5.66935 -2.99755 0.07807 0.87639 1.68173 1.95154 2.72335 2.97108 3.18757 3.42639 3.48332 3.49522 3.50714 3.92770 4.39881 4.46363 4.54073 4.66007 4.73997 4.81489 4.88755 5.04543 5.11610 5.29759 5.49812 5.51648 5.62324 5.67743 5.68809 5.77824 5.83385 5.85212 5.90662 6.03762 6.10298 6.13023 6.17895 6.22817 6.36923 6.42399 6.58663 6.62886 6.76977 6.95877 7.00988 7.14515 7.34303 7.61739 7.67995 7.87718 8.04535 8.31171 9.27382 9.87875 10.54287 11.44976 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.030065 B = 0.001569 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.101717 B =17841.922455 C =18427.435126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.011 4.011 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.607 5.607 10 C 0.177 3.823 11 C -0.138 4.138 12 C -0.100 4.100 13 H 0.076 0.924 14 C -0.117 4.117 15 C 0.117 3.883 16 N -0.721 5.721 17 C 0.558 3.442 18 O -0.537 6.537 19 C -0.115 4.115 20 C -0.091 4.091 21 C -0.070 4.070 22 C 0.082 3.918 23 N -0.488 5.488 24 C 0.461 3.539 25 O -0.442 6.442 26 N -0.596 5.596 27 H 0.426 0.574 28 C 0.043 3.957 29 C -0.039 4.039 30 C 0.139 3.861 31 H 0.251 0.749 32 H 0.045 0.955 33 H 0.041 0.959 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.400 0.600 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.413 0.587 44 H 0.141 0.859 45 H 0.018 0.982 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.300 -31.762 -1.291 32.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.176 4.176 12 C -0.121 4.121 13 H 0.094 0.906 14 C -0.155 4.155 15 C -0.005 4.005 16 N -0.373 5.373 17 C 0.345 3.655 18 O -0.415 6.415 19 C -0.120 4.120 20 C -0.112 4.112 21 C -0.089 4.089 22 C -0.038 4.038 23 N -0.219 5.219 24 C 0.157 3.843 25 O -0.244 6.244 26 N -0.220 5.220 27 H 0.266 0.734 28 C -0.066 4.066 29 C -0.060 4.060 30 C 0.013 3.987 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.235 0.765 41 H 0.155 0.845 42 H 0.158 0.842 43 H 0.272 0.728 44 H 0.159 0.841 45 H 0.035 0.965 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.722 -31.579 -0.814 32.297 hybrid contribution 0.869 0.872 -0.879 1.513 sum 7.591 -30.706 -1.693 31.676 Atomic orbital electron populations 1.69982 1.04861 1.24788 1.57461 1.24799 0.95726 0.97643 1.02476 0.86053 0.78746 0.83850 0.77191 1.20519 1.21801 1.21816 1.19132 0.90492 0.82515 1.43274 0.90426 1.44503 1.01744 0.99970 1.87108 1.21127 0.84356 0.88387 1.00938 1.22895 0.95918 0.99467 0.99367 1.22271 0.97666 0.91923 1.00194 0.90579 1.21756 0.96105 0.96757 1.00886 1.21545 0.99215 0.80136 0.99651 1.45973 1.26975 1.14763 1.49565 1.18009 0.81427 0.85225 0.80836 1.90812 1.43403 1.71758 1.35511 1.19639 0.96935 0.94338 1.01128 1.20788 0.98762 0.94834 0.96813 1.19931 0.95963 0.92802 1.00230 1.18996 0.96541 0.90368 0.97928 1.70662 1.09823 1.16028 1.25417 1.20392 0.89030 0.83343 0.91581 1.84823 1.59424 1.21822 1.58288 1.43424 1.24965 1.11822 1.41804 0.73376 1.18453 0.92512 0.92056 1.03552 1.19998 0.97745 0.89325 0.98981 1.21625 0.94323 0.86103 0.96627 0.93900 0.93728 0.94112 0.92370 0.92562 0.91567 0.91201 0.90700 0.91199 0.76502 0.84501 0.84230 0.72809 0.84105 0.96478 0.94443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.48 10.31 55.49 0.57 -26.91 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 3 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 7 C -0.23 -6.42 10.28 -15.06 -0.15 -6.57 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.61 -15.69 3.40 -170.03 -0.58 -16.27 16 10 C 0.18 4.30 5.37 -3.07 -0.02 4.28 16 11 C -0.14 -2.47 6.42 -24.90 -0.16 -2.63 16 12 C -0.10 -1.64 3.04 -88.47 -0.27 -1.91 16 13 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 14 C -0.12 -1.38 4.84 -26.73 -0.13 -1.51 16 15 C 0.12 1.42 5.55 -4.05 -0.02 1.39 16 16 N -0.72 -7.23 5.50 -61.36 -0.34 -7.56 16 17 C 0.56 6.60 7.76 -12.48 -0.10 6.51 16 18 O -0.54 -8.42 16.33 5.28 0.09 -8.34 16 19 C -0.12 -1.09 5.88 -104.92 -0.62 -1.71 16 20 C -0.09 -0.66 9.46 -39.59 -0.37 -1.03 16 21 C -0.07 -0.54 10.03 -39.64 -0.40 -0.94 16 22 C 0.08 0.78 7.22 -84.61 -0.61 0.17 16 23 N -0.49 -4.87 11.29 -12.18 -0.14 -5.00 16 24 C 0.46 3.38 9.39 -88.91 -0.83 2.54 16 25 O -0.44 -1.99 13.62 -17.30 -0.24 -2.22 16 26 N -0.60 -3.68 6.27 -11.94 -0.07 -3.75 16 27 H 0.43 1.28 8.96 -40.82 -0.37 0.91 16 28 C 0.04 0.37 7.29 -83.89 -0.61 -0.24 16 29 C -0.04 -0.35 9.61 -39.11 -0.38 -0.73 16 30 C 0.14 2.85 6.04 -2.50 -0.02 2.83 16 31 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.04 1.20 7.38 -51.93 -0.38 0.82 16 33 H 0.04 1.10 7.50 -51.92 -0.39 0.71 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.93 8.04 -51.93 -0.42 0.52 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.80 8.04 -51.92 -0.42 0.38 16 38 H 0.07 1.04 7.59 -51.93 -0.39 0.65 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.40 2.76 6.47 -40.82 -0.26 2.50 16 41 H 0.14 0.61 6.36 -52.48 -0.33 0.27 16 42 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 43 H 0.41 -0.43 9.06 45.56 0.41 -0.02 16 44 H 0.14 1.24 7.64 -52.49 -0.40 0.84 16 45 H 0.02 0.35 7.96 -51.93 -0.41 -0.06 16 46 H 0.04 0.76 8.10 -51.93 -0.42 0.34 16 LS Contribution 381.11 15.07 5.74 5.74 Total: -1.00 -37.54 381.11 -10.21 -47.76 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -5.45 Total: -0.95 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -4.78 Total: 0.06 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -0.56 Total: -59.49 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: -0.15 Total: -10.56 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.54 -10.21 -47.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753338861.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.234 kcal (2) G-P(sol) polarization free energy of solvation -37.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds