Wall clock time and date at job start Wed Apr 1 2020 02:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86791 * 120.00074 * 2 1 4 4 H 1.48508 * 109.47491 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47395 * 299.99383 * 3 2 1 6 6 H 1.48506 * 109.47522 * 59.99588 * 3 2 1 7 7 C 1.38817 * 119.99637 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99500 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00381 * 0.02562 * 7 2 1 10 10 C 1.47026 * 125.64833 * 359.97438 * 9 7 2 11 11 C 1.54316 * 107.27234 * 178.97252 * 10 9 7 12 12 C 1.55150 * 102.94311 * 337.80183 * 11 10 9 13 13 H 1.08996 * 111.01047 * 277.39176 * 12 11 10 14 14 C 1.53004 * 111.00760 * 153.57882 * 12 11 10 15 15 C 1.52995 * 109.47514 * 178.18327 * 14 12 11 16 16 N 1.46494 * 109.47282 * 179.97438 * 15 14 12 17 17 C 1.34778 * 120.00296 * 179.97438 * 16 15 14 18 18 O 1.21603 * 119.99697 * 0.02562 * 17 16 15 19 19 C 1.47504 * 120.00457 * 179.97438 * 17 16 15 20 20 C 1.40158 * 119.94576 * 0.02562 * 19 17 16 21 21 C 1.36205 * 120.49469 * 180.02562 * 20 19 17 22 22 C 1.40026 * 120.08639 * 359.97438 * 21 20 19 23 23 N 1.35553 * 133.26627 * 179.97438 * 22 21 20 24 24 C 1.30920 * 109.70961 * 180.02562 * 23 22 21 25 25 O 1.35202 * 125.01567 * 179.97438 * 24 23 22 26 26 N 1.36250 * 109.97350 * 359.97438 * 24 23 22 27 27 H 0.96999 * 126.39583 * 180.02562 * 26 24 23 28 28 C 1.38557 * 107.20710 * 0.02562 * 26 24 23 29 29 C 1.38220 * 133.89976 * 179.97438 * 28 26 24 30 30 C 1.47467 * 125.63265 * 179.97438 * 9 7 2 31 31 H 0.96998 * 120.00047 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.88338 * 59.54816 * 10 9 7 33 33 H 1.09011 * 110.00794 * 298.45883 * 10 9 7 34 34 H 1.09006 * 110.71775 * 219.44062 * 11 10 9 35 35 H 1.08996 * 110.87685 * 96.23889 * 11 10 9 36 36 H 1.09003 * 109.46720 * 58.17666 * 14 12 11 37 37 H 1.09007 * 109.46808 * 298.18479 * 14 12 11 38 38 H 1.09001 * 109.46979 * 59.99629 * 15 14 12 39 39 H 1.09003 * 109.46772 * 299.99748 * 15 14 12 40 40 H 0.97006 * 120.00072 * 359.97438 * 16 15 14 41 41 H 1.08003 * 119.75858 * 359.97438 * 20 19 17 42 42 H 1.08001 * 119.96237 * 179.70135 * 21 20 19 43 43 H 0.96703 * 114.00682 * 89.96946 * 25 24 23 44 44 H 1.07991 * 120.20354 * 0.07591 * 29 28 26 45 45 H 1.08995 * 110.34656 * 85.25618 * 30 9 7 46 46 H 1.08997 * 110.40202 * 322.92282 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1376 -2.5328 0.0005 11 6 -0.4485 -4.0441 -0.0259 12 6 0.8517 -4.6562 -0.6105 13 1 0.8565 -4.5973 -1.6988 14 6 1.0368 -6.1009 -0.1418 15 6 2.3025 -6.6839 -0.7734 16 7 2.4800 -8.0669 -0.3242 17 6 3.5354 -8.7855 -0.7556 18 8 4.3407 -8.2856 -1.5174 19 6 3.7145 -10.1778 -0.3028 20 6 2.7860 -10.7527 0.5758 21 6 2.9407 -12.0373 1.0014 22 6 4.0327 -12.7957 0.5619 23 7 4.4411 -14.0648 0.8067 24 6 5.5449 -14.3086 0.1462 25 8 6.2191 -15.4803 0.1677 26 7 5.9139 -13.2073 -0.5660 27 1 6.6932 -13.1262 -1.1380 28 6 4.9683 -12.2247 -0.3209 29 6 4.8073 -10.9209 -0.7505 30 6 1.9340 -3.7314 0.0005 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5576 -2.0523 -0.8831 33 1 -0.5568 -2.0838 0.9011 34 1 -1.2986 -4.2516 -0.6759 35 1 -0.6334 -4.4202 0.9803 36 1 0.1736 -6.6941 -0.4436 37 1 1.1301 -6.1214 0.9441 38 1 3.1656 -6.0906 -0.4716 39 1 2.2091 -6.6634 -1.8593 40 1 1.8378 -8.4656 0.2839 41 1 1.9419 -10.1726 0.9185 42 1 2.2227 -12.4701 1.6822 43 1 5.9403 -16.1072 -0.5137 44 1 5.5228 -10.4801 -1.4288 45 1 2.1673 -4.0417 1.0190 46 1 2.8332 -3.7412 -0.6154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753338861.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:13 Heat of formation + Delta-G solvation = -8.368979 kcal Electronic energy + Delta-G solvation = -28139.555004 eV Core-core repulsion = 24029.542364 eV Total energy + Delta-G solvation = -4110.012640 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.28479 -40.96523 -39.42043 -38.97787 -37.30489 -36.47698 -34.74227 -34.37640 -32.58854 -31.20566 -30.93276 -30.09025 -28.05728 -26.57044 -24.86579 -23.92023 -23.39619 -22.76536 -21.88700 -21.72538 -20.85075 -20.08801 -19.21504 -18.84499 -18.45492 -17.59645 -17.08207 -16.89694 -16.67723 -16.58034 -16.14430 -15.66944 -15.41381 -15.24758 -15.08494 -14.94692 -14.76804 -14.23133 -14.08811 -13.81143 -13.65953 -13.29135 -13.09313 -13.00622 -12.80958 -12.65940 -12.64705 -12.62122 -12.18958 -11.96494 -11.92847 -11.77999 -11.55655 -11.35029 -11.28125 -11.19628 -11.01394 -10.69913 -10.11972 -9.57292 -9.26172 -8.86409 -7.84275 -5.18934 -0.55174 0.29748 1.15432 1.38071 1.44880 1.45776 1.56295 1.96600 2.15773 2.50001 2.69322 2.81857 3.33619 3.40891 3.67079 3.73169 3.84092 3.96690 4.04008 4.09501 4.14511 4.20385 4.20925 4.36928 4.42707 4.51482 4.67102 4.74728 4.81157 4.93499 4.95648 5.04700 5.11542 5.18750 5.21644 5.25927 5.28448 5.31245 5.44635 5.46892 5.57801 5.62645 5.74348 5.82559 5.84793 6.22894 6.56226 6.57255 6.62440 7.12967 7.21759 7.81294 8.45281 9.26200 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.030065 B = 0.001569 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.101717 B =17841.922455 C =18427.435126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.068 4.068 3 Si 0.977 3.023 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.079 0.921 9 N -0.631 5.631 10 C 0.180 3.820 11 C -0.122 4.122 12 C -0.085 4.085 13 H 0.072 0.928 14 C -0.100 4.100 15 C 0.122 3.878 16 N -0.706 5.706 17 C 0.558 3.442 18 O -0.584 6.584 19 C -0.129 4.129 20 C -0.078 4.078 21 C -0.075 4.075 22 C 0.066 3.934 23 N -0.524 5.524 24 C 0.472 3.528 25 O -0.442 6.442 26 N -0.585 5.585 27 H 0.440 0.560 28 C 0.033 3.967 29 C -0.043 4.043 30 C 0.132 3.868 31 H 0.246 0.754 32 H 0.006 0.994 33 H 0.003 0.997 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.418 0.582 41 H 0.169 0.831 42 H 0.159 0.841 43 H 0.437 0.563 44 H 0.136 0.864 45 H 0.026 0.974 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.187 -34.217 -0.741 34.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.806 3.194 4 H -0.192 1.192 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.372 4.372 8 H 0.097 0.903 9 N -0.358 5.358 10 C 0.055 3.945 11 C -0.160 4.160 12 C -0.105 4.105 13 H 0.090 0.910 14 C -0.138 4.138 15 C -0.001 4.001 16 N -0.358 5.358 17 C 0.346 3.654 18 O -0.466 6.466 19 C -0.134 4.134 20 C -0.099 4.099 21 C -0.094 4.094 22 C -0.054 4.054 23 N -0.257 5.257 24 C 0.168 3.832 25 O -0.248 6.248 26 N -0.210 5.210 27 H 0.282 0.718 28 C -0.076 4.076 29 C -0.065 4.065 30 C 0.008 3.992 31 H 0.055 0.945 32 H 0.024 0.976 33 H 0.021 0.979 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.118 0.882 37 H 0.101 0.899 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.257 0.743 41 H 0.186 0.814 42 H 0.176 0.824 43 H 0.301 0.699 44 H 0.154 0.846 45 H 0.044 0.956 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 6.618 -34.104 -0.268 34.741 hybrid contribution 0.990 1.522 -1.052 2.098 sum 7.608 -32.582 -1.320 33.484 Atomic orbital electron populations 1.70205 1.06221 1.25082 1.58550 1.25646 0.96663 1.00978 1.02837 0.85026 0.78118 0.79527 0.76778 1.19184 1.21841 1.21778 1.19513 0.90949 0.84090 1.42619 0.90347 1.44860 1.02714 1.01272 1.86926 1.20946 0.83551 0.92686 0.97332 1.22755 0.97412 0.94372 1.01456 1.22155 0.94791 0.93874 0.99717 0.90980 1.21607 0.97067 0.93623 1.01496 1.21331 0.98569 0.80960 0.99266 1.45757 1.26897 1.13796 1.49340 1.18361 0.80972 0.86007 0.80042 1.90789 1.45143 1.72880 1.37775 1.19530 0.98102 0.93189 1.02563 1.21021 0.98738 0.94731 0.95406 1.20206 0.95907 0.92858 1.00429 1.19403 0.97271 0.90569 0.98182 1.70642 1.11432 1.16535 1.27117 1.20467 0.88255 0.84096 0.90404 1.84793 1.59089 1.21356 1.59582 1.43364 1.25032 1.11057 1.41594 0.71756 1.18443 0.93207 0.92134 1.03845 1.20010 0.97821 0.89651 0.99012 1.21859 0.95425 0.84696 0.97260 0.94472 0.97569 0.97861 0.89966 0.90398 0.88178 0.89860 0.92967 0.92017 0.74324 0.81405 0.82374 0.69912 0.84613 0.95645 0.94970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.58 10.31 21.65 0.22 -58.35 16 2 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 3 Si 0.98 47.06 29.55 68.60 2.03 49.09 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 7 C -0.24 -14.08 10.28 84.04 0.86 -13.21 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 9 N -0.63 -33.22 3.40 -691.87 -2.35 -35.57 16 10 C 0.18 8.95 5.37 86.73 0.47 9.41 16 11 C -0.12 -4.11 6.42 31.78 0.20 -3.91 16 12 C -0.09 -2.61 3.04 -9.40 -0.03 -2.64 16 13 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 14 C -0.10 -1.98 4.84 30.59 0.15 -1.83 16 15 C 0.12 2.71 5.55 86.38 0.48 3.19 16 16 N -0.71 -12.34 5.50 -466.31 -2.57 -14.91 16 17 C 0.56 12.59 7.76 86.69 0.67 13.26 16 18 O -0.58 -18.49 16.33 -4.04 -0.07 -18.56 16 19 C -0.13 -2.26 5.88 -20.06 -0.12 -2.38 16 20 C -0.08 -0.92 9.46 22.26 0.21 -0.71 16 21 C -0.07 -1.00 10.03 22.23 0.22 -0.77 16 22 C 0.07 1.17 7.22 39.61 0.29 1.46 16 23 N -0.52 -9.84 11.29 -306.25 -3.46 -13.29 16 24 C 0.47 6.24 9.39 179.75 1.69 7.93 16 25 O -0.44 -3.12 13.62 -84.82 -1.16 -4.27 16 26 N -0.58 -6.53 6.27 -302.69 -1.90 -8.43 16 27 H 0.44 2.11 8.96 -92.71 -0.83 1.28 16 28 C 0.03 0.54 7.29 38.69 0.28 0.82 16 29 C -0.04 -0.77 9.61 22.58 0.22 -0.55 16 30 C 0.13 5.34 6.04 86.85 0.52 5.87 16 31 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 32 H 0.01 0.34 7.38 -2.39 -0.02 0.32 16 33 H 0.00 0.18 7.50 -2.38 -0.02 0.16 16 34 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 35 H 0.08 2.32 8.04 -2.39 -0.02 2.30 16 36 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.08 1.51 8.04 -2.38 -0.02 1.50 16 38 H 0.05 1.41 7.59 -2.39 -0.02 1.39 16 39 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.42 4.09 6.47 -92.70 -0.60 3.49 16 41 H 0.17 0.78 6.36 -2.91 -0.02 0.76 16 42 H 0.16 1.45 8.06 -2.91 -0.02 1.42 16 43 H 0.44 -1.90 9.06 -74.06 -0.67 -2.57 16 44 H 0.14 2.46 7.64 -2.92 -0.02 2.43 16 45 H 0.03 1.00 7.96 -2.39 -0.02 0.98 16 46 H 0.03 1.32 8.10 -2.39 -0.02 1.30 16 Total: -1.00 -85.56 381.11 -3.71 -89.26 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -1.05 Total: 2.67 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 6.58 Total: 12.37 kcal Atomic # 7 Polarization: -120.51 SS G_CDS: -10.05 Total: -130.56 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -1.22 Total: -22.83 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -85.56 -3.71 -89.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753338861.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.893 kcal (2) G-P(sol) polarization free energy of solvation -85.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds