Wall clock time and date at job start Wed Apr 1 2020 02:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 120.00012 * 2 1 4 4 H 1.48499 * 109.46818 * 239.99862 * 3 2 1 5 5 H 1.48501 * 109.47011 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47003 * 119.99706 * 3 2 1 7 7 C 1.38810 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99540 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00391 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00225 * 174.37709 * 9 7 2 11 11 C 1.52998 * 110.02067 * 61.54519 * 10 9 7 12 12 N 1.46500 * 109.46911 * 55.26093 * 11 10 9 13 13 C 1.34775 * 119.99906 * 175.53302 * 12 11 10 14 14 O 1.21283 * 120.00006 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99986 * 180.02562 * 13 12 11 16 16 C 1.52778 * 109.17512 * 301.18201 * 15 13 12 17 17 C 1.53037 * 109.88336 * 169.79157 * 16 15 13 18 18 S 1.81671 * 109.07777 * 63.59450 * 17 16 15 19 19 O 1.42096 * 108.66198 * 59.97892 * 18 17 16 20 20 O 1.42093 * 108.66229 * 191.22884 * 18 17 16 21 21 C 1.81673 * 101.30401 * 305.65216 * 18 17 16 22 22 C 1.52590 * 109.24022 * 180.02562 * 15 13 12 23 23 C 1.54271 * 110.07412 * 182.96765 * 10 9 7 24 24 C 1.54884 * 104.19623 * 95.69149 * 23 10 9 25 25 C 1.54884 * 102.75006 * 37.94712 * 24 23 10 26 26 C 1.53877 * 110.03167 * 300.15229 * 10 9 7 27 27 H 0.97004 * 119.99617 * 0.02562 * 1 2 3 28 28 H 0.97003 * 119.99570 * 354.36728 * 9 7 2 29 29 H 1.08994 * 109.46951 * 295.26729 * 11 10 9 30 30 H 1.08999 * 109.47255 * 175.26436 * 11 10 9 31 31 H 0.96998 * 120.00203 * 355.53936 * 12 11 10 32 32 H 1.08994 * 109.23733 * 60.55995 * 15 13 12 33 33 H 1.09005 * 109.51872 * 49.61234 * 16 15 13 34 34 H 1.09002 * 109.35352 * 289.86771 * 16 15 13 35 35 H 1.09002 * 109.54916 * 303.68987 * 17 16 15 36 36 H 1.09004 * 109.54956 * 183.49768 * 17 16 15 37 37 H 1.09001 * 109.54520 * 174.15542 * 21 18 17 38 38 H 1.09003 * 109.55368 * 294.34406 * 21 18 17 39 39 H 1.08995 * 109.38543 * 70.08751 * 22 15 13 40 40 H 1.08998 * 109.30176 * 310.34616 * 22 15 13 41 41 H 1.08996 * 110.48173 * 214.37301 * 23 10 9 42 42 H 1.09004 * 110.48022 * 337.01509 * 23 10 9 43 43 H 1.09001 * 110.75615 * 279.62765 * 24 23 10 44 44 H 1.09005 * 110.75185 * 156.26108 * 24 23 10 45 45 H 1.09003 * 110.48753 * 203.38124 * 25 24 23 46 46 H 1.08999 * 110.49121 * 80.73146 * 25 24 23 47 47 H 1.09009 * 110.03135 * 359.95495 * 26 10 9 48 48 H 1.09003 * 110.03194 * 121.38105 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0529 -3.6537 -0.1232 11 6 3.0114 -3.8246 1.0570 12 7 2.2647 -3.7140 2.3125 13 6 2.8893 -3.9217 3.4886 14 8 4.0696 -4.1998 3.5075 15 6 2.1210 -3.8084 4.7801 16 6 1.5272 -2.4050 4.8894 17 6 0.5407 -2.3467 6.0579 18 16 1.4381 -2.6496 7.6082 19 8 2.4342 -1.6477 7.7602 20 8 0.4922 -2.8533 8.6488 21 6 2.2549 -4.2309 7.2439 22 6 3.0598 -4.0889 5.9499 23 6 1.0592 -4.8328 -0.1720 24 6 0.8691 -5.1070 -1.6845 25 6 2.2914 -4.8807 -2.2543 26 6 2.8363 -3.6842 -1.4472 27 1 -0.4850 0.8401 -0.0004 28 1 0.3591 -2.3900 0.0826 29 1 3.7759 -3.0487 1.0194 30 1 3.4853 -4.8046 1.0012 31 1 1.3207 -3.4913 2.2974 32 1 1.3138 -4.5409 4.7832 33 1 1.0072 -2.1565 3.9642 34 1 2.3289 -1.6856 5.0564 35 1 -0.2268 -3.1094 5.9258 36 1 0.0743 -1.3621 6.0928 37 1 2.9245 -4.4927 8.0631 38 1 1.5029 -5.0108 7.1240 39 1 3.7669 -3.2658 6.0517 40 1 3.6054 -5.0133 5.7604 41 1 1.4802 -5.7072 0.3243 42 1 0.1112 -4.5519 0.2869 43 1 0.1618 -4.4006 -2.1192 44 1 0.5443 -6.1337 -1.8531 45 1 2.2427 -4.6347 -3.3151 46 1 2.9114 -5.7628 -2.0944 47 1 2.6748 -2.7575 -1.9981 48 1 3.8994 -3.8207 -1.2490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753669474.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:57 Heat of formation + Delta-G solvation = -113.236135 kcal Electronic energy + Delta-G solvation = -29688.935817 eV Core-core repulsion = 25677.526996 eV Total energy + Delta-G solvation = -4011.408821 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.02273 -38.46930 -37.24700 -36.30911 -36.15735 -34.25569 -33.41041 -32.01856 -30.74607 -28.92649 -28.36847 -27.46544 -24.52930 -23.73620 -23.28939 -21.86101 -20.46318 -19.72327 -19.01719 -18.67994 -17.43614 -17.06803 -16.76226 -16.51145 -15.97250 -15.80812 -15.33828 -14.87613 -14.74691 -14.34017 -14.18311 -13.97830 -13.82701 -13.30933 -13.30032 -13.18418 -12.93132 -12.64591 -12.31573 -12.28239 -12.14937 -12.01575 -11.96313 -11.67367 -11.55811 -11.22174 -11.07241 -10.86999 -10.85610 -10.75608 -10.65036 -10.58036 -10.44595 -10.19043 -10.13927 -9.93021 -9.72432 -9.53359 -8.99428 -8.56440 -7.10629 -5.88934 -3.18645 -0.15812 2.47834 2.83272 3.37695 3.39513 3.43025 3.44907 3.48488 3.83419 4.23025 4.34858 4.44214 4.49604 4.59748 4.70068 4.89572 5.01279 5.02973 5.06774 5.15618 5.16261 5.37929 5.39429 5.49575 5.59122 5.61183 5.69583 5.72247 5.88636 5.90800 5.97109 5.99093 6.03088 6.08220 6.17609 6.25769 6.35643 6.50222 6.54375 6.66095 6.75828 6.89587 7.05787 7.64435 7.91131 8.29721 8.53177 9.41674 9.94720 10.30504 11.32651 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010666 B = 0.003693 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.509934 B = 7580.760693 C = 9160.718368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.006 4.006 3 Si 0.900 3.100 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.235 4.235 8 H 0.069 0.931 9 N -0.712 5.712 10 C 0.188 3.812 11 C 0.117 3.883 12 N -0.698 5.698 13 C 0.516 3.484 14 O -0.551 6.551 15 C -0.127 4.127 16 C -0.108 4.108 17 C -0.597 4.597 18 S 2.412 3.588 19 O -0.935 6.935 20 O -0.948 6.948 21 C -0.601 4.601 22 C -0.092 4.092 23 C -0.122 4.122 24 C -0.119 4.119 25 C -0.121 4.121 26 C -0.130 4.130 27 H 0.256 0.744 28 H 0.384 0.616 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.404 0.596 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.135 0.865 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.055 0.945 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.082 0.918 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.045 -12.242 7.881 14.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.203 4.203 3 Si 0.731 3.269 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.212 1.212 7 C -0.366 4.366 8 H 0.087 0.913 9 N -0.354 5.354 10 C 0.096 3.904 11 C -0.009 4.009 12 N -0.347 5.347 13 C 0.301 3.699 14 O -0.430 6.430 15 C -0.149 4.149 16 C -0.146 4.146 17 C -0.727 4.727 18 S 2.594 3.406 19 O -0.932 6.932 20 O -0.945 6.945 21 C -0.731 4.731 22 C -0.131 4.131 23 C -0.160 4.160 24 C -0.157 4.157 25 C -0.158 4.158 26 C -0.170 4.170 27 H 0.065 0.935 28 H 0.218 0.782 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.240 0.760 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.111 0.889 35 H 0.153 0.847 36 H 0.158 0.842 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.110 0.890 40 H 0.116 0.884 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.101 0.899 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.916 -11.751 8.635 14.611 hybrid contribution -0.422 0.681 -0.742 1.092 sum 0.494 -11.069 7.893 13.604 Atomic orbital electron populations 1.69640 1.05012 1.25835 1.57364 1.24689 0.95395 0.97502 1.02673 0.86383 0.78685 0.83820 0.78009 1.21268 1.21767 1.21211 1.19038 0.90975 0.83756 1.42870 0.91307 1.42538 1.06021 0.99455 1.87341 1.20452 0.91023 0.87301 0.91609 1.21974 0.95280 1.00069 0.83549 1.45793 1.14332 1.69160 1.05459 1.20088 0.87504 0.77329 0.84981 1.90677 1.15706 1.49077 1.87522 1.21533 0.99497 0.99249 0.94592 1.21369 0.98268 0.95911 0.99099 1.30199 1.11799 1.12655 1.18013 1.08210 0.76772 0.78095 0.77505 1.93602 1.58874 1.55383 1.85323 1.93584 1.62288 1.86203 1.52467 1.30233 1.12899 1.22396 1.07527 1.21088 0.97127 1.06294 0.88550 1.22576 0.99332 0.97571 0.96562 1.22413 0.97355 1.00194 0.95726 1.22307 0.96222 0.98138 0.99176 1.22666 0.98473 0.98881 0.97000 0.93463 0.78175 0.91783 0.92644 0.76017 0.87639 0.87694 0.88872 0.84690 0.84174 0.84605 0.84887 0.89006 0.88402 0.91859 0.91611 0.91253 0.92622 0.92438 0.92604 0.89899 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.47 13.07 55.49 0.73 -24.74 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 3 Si 0.90 21.32 29.55 -169.99 -5.02 16.29 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.24 -5.72 8.52 -15.06 -0.13 -5.85 16 8 H 0.07 1.70 7.27 -52.48 -0.38 1.32 16 9 N -0.71 -14.79 4.53 -46.20 -0.21 -15.00 16 10 C 0.19 3.14 0.68 -130.70 -0.09 3.05 16 11 C 0.12 1.96 4.04 -4.04 -0.02 1.94 16 12 N -0.70 -10.53 5.03 -60.30 -0.30 -10.83 16 13 C 0.52 7.63 7.14 -10.98 -0.08 7.55 16 14 O -0.55 -9.98 15.77 5.55 0.09 -9.89 16 15 C -0.13 -1.34 2.28 -92.09 -0.21 -1.55 16 16 C -0.11 -1.17 5.01 -26.83 -0.13 -1.31 16 17 C -0.60 -5.00 6.34 37.18 0.24 -4.77 16 18 S 2.41 23.38 5.31 -107.50 -0.57 22.81 16 19 O -0.93 -12.83 17.94 -57.82 -1.04 -13.86 16 20 O -0.95 -11.99 18.10 -57.82 -1.05 -13.04 16 21 C -0.60 -4.35 6.35 37.18 0.24 -4.11 16 22 C -0.09 -0.91 4.47 -26.92 -0.12 -1.03 16 23 C -0.12 -1.71 5.72 -25.07 -0.14 -1.85 16 24 C -0.12 -1.60 6.91 -24.74 -0.17 -1.78 16 25 C -0.12 -1.65 6.83 -25.08 -0.17 -1.82 16 26 C -0.13 -2.14 5.93 -25.61 -0.15 -2.29 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.38 8.56 7.45 -40.82 -0.30 8.26 16 29 H 0.06 1.24 7.46 -51.93 -0.39 0.85 16 30 H 0.06 0.88 8.04 -51.93 -0.42 0.47 16 31 H 0.40 5.78 7.23 -40.82 -0.30 5.49 16 32 H 0.11 0.78 8.09 -51.93 -0.42 0.35 16 33 H 0.10 1.26 7.19 -51.93 -0.37 0.89 16 34 H 0.09 1.12 8.02 -51.93 -0.42 0.70 16 35 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.14 1.11 8.14 -51.92 -0.42 0.69 16 37 H 0.14 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.13 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 1.01 8.01 -51.93 -0.42 0.60 16 40 H 0.10 0.99 7.72 -51.93 -0.40 0.59 16 41 H 0.06 0.80 7.79 -51.93 -0.40 0.40 16 42 H 0.07 0.92 7.72 -51.93 -0.40 0.52 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.08 1.61 7.36 -51.92 -0.38 1.22 16 48 H 0.05 0.81 7.67 -51.93 -0.40 0.41 16 LS Contribution 386.82 15.07 5.83 5.83 Total: -1.00 -33.69 386.82 -10.50 -44.20 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -7.92 Total: 12.31 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -1.04 Total: -14.06 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: 0.21 Total: -50.57 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -2.00 Total: -36.80 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 23.38 SS G_CDS: -0.57 Total: 22.81 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.69 -10.50 -44.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753669474.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.040 kcal (2) G-P(sol) polarization free energy of solvation -33.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds