Wall clock time and date at job start Wed Apr 1 2020 02:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99938 * 2 1 4 4 H 1.48510 * 109.46901 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47483 * 300.00291 * 3 2 1 6 6 H 1.48498 * 109.47091 * 60.00861 * 3 2 1 7 7 C 1.38810 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00356 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00215 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00197 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46921 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.05687 * 53.58786 * 11 10 9 13 13 C 1.54259 * 110.03389 * 292.16632 * 11 10 9 14 14 C 1.54895 * 104.19576 * 217.10395 * 13 11 10 15 15 C 1.54890 * 102.74565 * 37.94545 * 14 13 11 16 16 C 1.53880 * 110.03111 * 174.99859 * 11 10 9 17 17 H 1.08996 * 110.07489 * 238.59687 * 16 11 10 18 18 N 1.46501 * 110.03306 * 0.02562 * 16 11 10 19 19 C 1.34771 * 120.00070 * 203.62176 * 18 16 11 20 20 O 1.21598 * 120.00402 * 359.97438 * 19 18 16 21 21 C 1.47511 * 120.00146 * 179.97438 * 19 18 16 22 22 C 1.40158 * 119.94398 * 359.97438 * 21 19 18 23 23 C 1.36214 * 120.48950 * 180.02562 * 22 21 19 24 24 C 1.40016 * 120.08600 * 359.97438 * 23 22 21 25 25 N 1.35559 * 133.26192 * 180.02562 * 24 23 22 26 26 C 1.30924 * 109.70755 * 179.97438 * 25 24 23 27 27 O 1.35204 * 125.00892 * 179.97438 * 26 25 24 28 28 N 1.36251 * 109.97410 * 0.02562 * 26 25 24 29 29 H 0.97001 * 126.39379 * 180.02562 * 28 26 25 30 30 C 1.38553 * 107.20692 * 0.02562 * 28 26 25 31 31 C 1.38219 * 133.90272 * 180.02562 * 30 28 26 32 32 H 0.96999 * 120.00102 * 359.97438 * 1 2 3 33 33 H 0.96997 * 119.99622 * 0.02562 * 9 7 2 34 34 H 1.09000 * 109.47143 * 60.00430 * 10 9 7 35 35 H 1.09003 * 109.46939 * 299.99944 * 10 9 7 36 36 H 1.08999 * 110.48590 * 98.43031 * 13 11 10 37 37 H 1.08996 * 110.59974 * 335.83915 * 13 11 10 38 38 H 1.08999 * 110.75724 * 279.62831 * 14 13 11 39 39 H 1.08999 * 110.75352 * 156.25619 * 14 13 11 40 40 H 1.08999 * 110.48118 * 203.37470 * 15 14 13 41 41 H 1.09003 * 110.48495 * 80.73635 * 15 14 13 42 42 H 0.97003 * 119.99593 * 23.61606 * 18 16 11 43 43 H 1.08000 * 119.75608 * 359.97438 * 22 21 19 44 44 H 1.08002 * 119.95267 * 180.02562 * 23 22 21 45 45 H 0.96700 * 114.00337 * 90.02327 * 27 26 25 46 46 H 1.08007 * 120.20177 * 359.95365 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 0.0001 12 1 0.3586 -4.7090 -0.8236 13 6 0.3053 -4.8657 1.3425 14 6 0.1426 -6.3780 1.6353 15 6 1.4881 -6.9678 1.1444 16 6 1.8158 -6.1563 -0.1259 17 1 1.4764 -6.6945 -1.0108 18 7 3.2584 -5.9146 -0.2081 19 6 4.0633 -6.8299 -0.7832 20 8 3.5923 -7.8566 -1.2334 21 6 5.5158 -6.5863 -0.8665 22 6 6.0575 -5.4023 -0.3477 23 6 7.3970 -5.1657 -0.4191 24 6 8.2455 -6.1079 -1.0132 25 7 9.5839 -6.1502 -1.2241 26 6 9.9002 -7.2669 -1.8300 27 8 11.1531 -7.6266 -2.1889 28 7 8.7805 -8.0123 -2.0466 29 1 8.7415 -8.8807 -2.4771 30 6 7.7080 -7.2984 -1.5369 31 6 6.3480 -7.5340 -1.4631 32 1 -0.4850 0.8400 0.0004 33 1 0.3556 -2.3881 -0.0005 34 1 2.6847 -3.7146 0.8895 35 1 2.6847 -3.7145 -0.8906 36 1 -0.6701 -4.3888 1.2462 37 1 0.8877 -4.3855 2.1288 38 1 -0.6909 -6.7936 1.0690 39 1 0.0109 -6.5528 2.7031 40 1 1.3758 -8.0249 0.9035 41 1 2.2635 -6.8274 1.8975 42 1 3.6342 -5.0957 0.1513 43 1 5.4079 -4.6717 0.1114 44 1 7.8052 -4.2506 -0.0161 45 1 11.6289 -8.1250 -1.5104 46 1 5.9323 -8.4470 -1.8633 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753893187.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:26 Heat of formation + Delta-G solvation = 13.185854 kcal Electronic energy + Delta-G solvation = -29369.410201 eV Core-core repulsion = 25260.332249 eV Total energy + Delta-G solvation = -4109.077952 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.54772 -40.27112 -38.65029 -37.93224 -36.48539 -34.38182 -33.69026 -33.59207 -31.42023 -30.40573 -29.75312 -28.56551 -27.29714 -24.62367 -23.91454 -23.15539 -22.48648 -22.05437 -20.95639 -20.43963 -19.48938 -19.02265 -18.49029 -17.73458 -17.24684 -16.69798 -16.21138 -15.84174 -15.25307 -15.08673 -14.68327 -14.57344 -14.41159 -14.36271 -14.21016 -13.72592 -13.52088 -13.46230 -13.02509 -12.91226 -12.44845 -12.21017 -11.92130 -11.87311 -11.60593 -11.31341 -11.13267 -10.88362 -10.84181 -10.80412 -10.48795 -10.41029 -10.40050 -10.28307 -9.97454 -9.92434 -9.70439 -9.01647 -8.87619 -8.79845 -8.44595 -6.95206 -5.78738 -3.07739 0.25571 1.08406 1.83904 2.10785 2.90085 3.16714 3.35842 3.42738 3.48694 3.50643 3.68541 4.10775 4.51639 4.60717 4.66663 4.75168 4.83057 4.86224 4.93499 4.99338 5.11372 5.23275 5.46006 5.53175 5.62515 5.66684 5.71096 5.76254 5.85427 5.87278 5.92829 6.03421 6.05765 6.07574 6.17153 6.21340 6.25776 6.29946 6.39030 6.44121 6.58023 6.60178 6.71240 6.80698 7.10960 7.31883 7.57095 7.67628 8.23179 8.39732 9.51504 10.08449 10.42948 11.44020 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009565 B = 0.002840 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2926.782729 B = 9857.083399 C =12450.497235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.728 5.728 10 C 0.156 3.844 11 C -0.108 4.108 12 H 0.083 0.917 13 C -0.112 4.112 14 C -0.125 4.125 15 C -0.132 4.132 16 C 0.149 3.851 17 H 0.090 0.910 18 N -0.712 5.712 19 C 0.560 3.440 20 O -0.545 6.545 21 C -0.114 4.114 22 C -0.089 4.089 23 C -0.068 4.068 24 C 0.082 3.918 25 N -0.486 5.486 26 C 0.458 3.542 27 O -0.442 6.442 28 N -0.597 5.597 29 H 0.425 0.575 30 C 0.042 3.958 31 C -0.042 4.042 32 H 0.255 0.745 33 H 0.385 0.615 34 H 0.017 0.983 35 H 0.022 0.978 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.408 0.592 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.412 0.588 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.826 -20.403 0.417 25.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.372 5.372 10 C 0.028 3.972 11 C -0.127 4.127 12 H 0.101 0.899 13 C -0.149 4.149 14 C -0.163 4.163 15 C -0.170 4.170 16 C 0.044 3.956 17 H 0.108 0.892 18 N -0.366 5.366 19 C 0.348 3.652 20 O -0.425 6.425 21 C -0.119 4.119 22 C -0.110 4.110 23 C -0.087 4.087 24 C -0.038 4.038 25 N -0.218 5.218 26 C 0.153 3.847 27 O -0.244 6.244 28 N -0.221 5.221 29 H 0.265 0.735 30 C -0.066 4.066 31 C -0.063 4.063 32 H 0.065 0.935 33 H 0.219 0.781 34 H 0.035 0.965 35 H 0.040 0.960 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.248 0.752 43 H 0.157 0.843 44 H 0.159 0.841 45 H 0.270 0.730 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 15.180 -20.047 -0.187 25.147 hybrid contribution 0.155 0.013 -0.046 0.162 sum 15.335 -20.034 -0.234 25.230 Atomic orbital electron populations 1.69667 1.05123 1.25575 1.57661 1.24738 0.95511 0.97712 1.02919 0.86137 0.78845 0.84149 0.77180 1.20475 1.21892 1.21883 1.19254 0.91038 0.84112 1.42774 0.91107 1.42322 1.05899 0.99688 1.89309 1.20705 0.93465 0.85747 0.97323 1.22224 0.98007 0.93411 0.99104 0.89859 1.22358 1.00820 0.95097 0.96649 1.22495 0.96793 0.96319 1.00662 1.22767 0.97849 0.99370 0.97035 1.21687 0.78836 0.96160 0.98893 0.89197 1.46328 1.08021 1.22531 1.59733 1.18027 0.85838 0.83500 0.77864 1.90754 1.76523 1.26876 1.48304 1.19652 0.93237 0.95766 1.03198 1.20877 0.94971 0.96247 0.98902 1.19971 0.91551 0.98362 0.98823 1.18984 0.89187 0.94386 1.01223 1.70660 1.13476 1.18282 1.19346 1.20380 0.81568 0.87380 0.95329 1.84822 1.19637 1.75837 1.44078 1.43385 1.06265 1.20500 1.51988 0.73536 1.18443 0.89601 0.95123 1.03474 1.19944 0.88158 0.99903 0.98317 0.93546 0.78135 0.96513 0.96025 0.91181 0.90961 0.91560 0.91631 0.91463 0.91263 0.75235 0.84319 0.84103 0.72956 0.84242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.66 13.06 55.49 0.72 -26.93 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.24 -6.49 9.99 -15.06 -0.15 -6.64 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.73 -17.51 5.45 -59.91 -0.33 -17.84 16 10 C 0.16 2.86 4.18 -4.04 -0.02 2.85 16 11 C -0.11 -1.66 2.96 -89.50 -0.26 -1.92 16 12 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 13 C -0.11 -1.61 6.08 -25.07 -0.15 -1.76 16 14 C -0.12 -1.47 6.91 -24.73 -0.17 -1.64 16 15 C -0.13 -1.60 6.52 -25.07 -0.16 -1.76 16 16 C 0.15 2.03 3.21 -66.81 -0.21 1.82 16 17 H 0.09 1.30 7.61 -51.93 -0.39 0.91 16 18 N -0.71 -9.40 4.37 -53.77 -0.24 -9.64 16 19 C 0.56 7.77 7.75 -12.48 -0.10 7.67 16 20 O -0.55 -8.93 16.00 5.28 0.08 -8.85 16 21 C -0.11 -1.37 5.88 -104.92 -0.62 -1.98 16 22 C -0.09 -0.97 9.46 -39.59 -0.37 -1.35 16 23 C -0.07 -0.75 10.03 -39.64 -0.40 -1.15 16 24 C 0.08 0.98 7.22 -84.61 -0.61 0.37 16 25 N -0.49 -5.89 11.29 -12.18 -0.14 -6.03 16 26 C 0.46 4.15 9.39 -88.91 -0.83 3.32 16 27 O -0.44 -2.66 13.62 -17.31 -0.24 -2.89 16 28 N -0.60 -4.64 6.27 -11.94 -0.07 -4.71 16 29 H 0.42 1.84 8.96 -40.82 -0.37 1.48 16 30 C 0.04 0.44 7.29 -83.89 -0.61 -0.17 16 31 C -0.04 -0.46 9.60 -39.11 -0.38 -0.83 16 32 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.38 9.83 7.55 -40.82 -0.31 9.52 16 34 H 0.02 0.30 7.12 -51.93 -0.37 -0.07 16 35 H 0.02 0.41 7.40 -51.93 -0.38 0.03 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.07 1.12 7.77 -51.93 -0.40 0.72 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.83 8.05 -51.93 -0.42 0.41 16 42 H 0.41 5.11 3.84 -40.82 -0.16 4.95 16 43 H 0.14 1.35 6.36 -52.49 -0.33 1.02 16 44 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 45 H 0.41 0.15 9.06 45.56 0.41 0.56 16 46 H 0.14 1.42 7.64 -52.48 -0.40 1.01 16 LS Contribution 379.17 15.07 5.71 5.71 Total: -1.00 -35.18 379.17 -9.86 -45.04 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -5.21 Total: 12.76 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -5.15 Total: -3.63 kcal Atomic # 7 Polarization: -65.10 SS G_CDS: -0.05 Total: -65.15 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -0.15 Total: -11.74 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.18 -9.86 -45.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753893187.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.230 kcal (2) G-P(sol) polarization free energy of solvation -35.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds