Wall clock time and date at job start Wed Apr 1 2020 02:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99938 * 2 1 4 4 H 1.48510 * 109.46901 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47483 * 300.00291 * 3 2 1 6 6 H 1.48498 * 109.47091 * 60.00861 * 3 2 1 7 7 C 1.38810 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00356 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00215 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00197 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46921 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.05687 * 53.58786 * 11 10 9 13 13 C 1.54259 * 110.03389 * 292.16632 * 11 10 9 14 14 C 1.54895 * 104.19576 * 217.10395 * 13 11 10 15 15 C 1.54890 * 102.74565 * 37.94545 * 14 13 11 16 16 C 1.53880 * 110.03111 * 174.99859 * 11 10 9 17 17 H 1.08996 * 110.07489 * 238.59687 * 16 11 10 18 18 N 1.46501 * 110.03306 * 0.02562 * 16 11 10 19 19 C 1.34771 * 120.00070 * 203.62176 * 18 16 11 20 20 O 1.21598 * 120.00402 * 359.97438 * 19 18 16 21 21 C 1.47511 * 120.00146 * 179.97438 * 19 18 16 22 22 C 1.40158 * 119.94398 * 359.97438 * 21 19 18 23 23 C 1.36214 * 120.48950 * 180.02562 * 22 21 19 24 24 C 1.40016 * 120.08600 * 359.97438 * 23 22 21 25 25 N 1.35559 * 133.26192 * 180.02562 * 24 23 22 26 26 C 1.30924 * 109.70755 * 179.97438 * 25 24 23 27 27 O 1.35204 * 125.00892 * 179.97438 * 26 25 24 28 28 N 1.36251 * 109.97410 * 0.02562 * 26 25 24 29 29 H 0.97001 * 126.39379 * 180.02562 * 28 26 25 30 30 C 1.38553 * 107.20692 * 0.02562 * 28 26 25 31 31 C 1.38219 * 133.90272 * 180.02562 * 30 28 26 32 32 H 0.96999 * 120.00102 * 359.97438 * 1 2 3 33 33 H 0.96997 * 119.99622 * 0.02562 * 9 7 2 34 34 H 1.09000 * 109.47143 * 60.00430 * 10 9 7 35 35 H 1.09003 * 109.46939 * 299.99944 * 10 9 7 36 36 H 1.08999 * 110.48590 * 98.43031 * 13 11 10 37 37 H 1.08996 * 110.59974 * 335.83915 * 13 11 10 38 38 H 1.08999 * 110.75724 * 279.62831 * 14 13 11 39 39 H 1.08999 * 110.75352 * 156.25619 * 14 13 11 40 40 H 1.08999 * 110.48118 * 203.37470 * 15 14 13 41 41 H 1.09003 * 110.48495 * 80.73635 * 15 14 13 42 42 H 0.97003 * 119.99593 * 23.61606 * 18 16 11 43 43 H 1.08000 * 119.75608 * 359.97438 * 22 21 19 44 44 H 1.08002 * 119.95267 * 180.02562 * 23 22 21 45 45 H 0.96700 * 114.00337 * 90.02327 * 27 26 25 46 46 H 1.08007 * 120.20177 * 359.95365 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 0.0001 12 1 0.3586 -4.7090 -0.8236 13 6 0.3053 -4.8657 1.3425 14 6 0.1426 -6.3780 1.6353 15 6 1.4881 -6.9678 1.1444 16 6 1.8158 -6.1563 -0.1259 17 1 1.4764 -6.6945 -1.0108 18 7 3.2584 -5.9146 -0.2081 19 6 4.0633 -6.8299 -0.7832 20 8 3.5923 -7.8566 -1.2334 21 6 5.5158 -6.5863 -0.8665 22 6 6.0575 -5.4023 -0.3477 23 6 7.3970 -5.1657 -0.4191 24 6 8.2455 -6.1079 -1.0132 25 7 9.5839 -6.1502 -1.2241 26 6 9.9002 -7.2669 -1.8300 27 8 11.1531 -7.6266 -2.1889 28 7 8.7805 -8.0123 -2.0466 29 1 8.7415 -8.8807 -2.4771 30 6 7.7080 -7.2984 -1.5369 31 6 6.3480 -7.5340 -1.4631 32 1 -0.4850 0.8400 0.0004 33 1 0.3556 -2.3881 -0.0005 34 1 2.6847 -3.7146 0.8895 35 1 2.6847 -3.7145 -0.8906 36 1 -0.6701 -4.3888 1.2462 37 1 0.8877 -4.3855 2.1288 38 1 -0.6909 -6.7936 1.0690 39 1 0.0109 -6.5528 2.7031 40 1 1.3758 -8.0249 0.9035 41 1 2.2635 -6.8274 1.8975 42 1 3.6342 -5.0957 0.1513 43 1 5.4079 -4.6717 0.1114 44 1 7.8052 -4.2506 -0.0161 45 1 11.6289 -8.1250 -1.5104 46 1 5.9323 -8.4470 -1.8633 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753893187.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:25 Heat of formation + Delta-G solvation = -14.661847 kcal Electronic energy + Delta-G solvation = -29370.617768 eV Core-core repulsion = 25260.332249 eV Total energy + Delta-G solvation = -4110.285519 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.30436 -41.35765 -39.55847 -38.82301 -37.28866 -36.18209 -34.75391 -34.39528 -33.25873 -31.23087 -30.65362 -30.10412 -28.33481 -26.31973 -24.81965 -24.23642 -23.88108 -22.80423 -21.95457 -21.49990 -20.38394 -20.05869 -19.54241 -18.95774 -18.48409 -17.57482 -17.32920 -16.76366 -16.52915 -16.34384 -16.02241 -15.67754 -15.35756 -15.23233 -15.19150 -15.04433 -14.92248 -14.68875 -14.35403 -14.25900 -13.43498 -13.11361 -13.07175 -12.88477 -12.78708 -12.67793 -12.62290 -12.30360 -12.08895 -11.94085 -11.89059 -11.74296 -11.68217 -11.49843 -11.40984 -11.20632 -11.04981 -10.90228 -10.07654 -9.59851 -9.28751 -8.95060 -7.91097 -5.19053 -0.56689 0.25446 1.14824 1.36471 1.50782 1.51544 1.61016 1.94677 2.16502 2.59216 2.67081 2.78694 3.38112 3.43019 3.49391 3.71135 3.72896 3.89723 3.94279 4.06768 4.11985 4.18974 4.22210 4.40279 4.44624 4.55164 4.56511 4.59079 4.71612 4.80167 4.91764 4.95750 5.03549 5.07063 5.12988 5.23352 5.23772 5.27033 5.30714 5.39795 5.52607 5.53346 5.56466 5.61979 5.85780 6.30978 6.50395 6.56432 6.63050 7.15983 7.38286 8.14051 8.36507 9.32748 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009565 B = 0.002840 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2926.782729 B = 9857.083399 C =12450.497235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.968 3.032 4 H -0.263 1.263 5 H -0.298 1.298 6 H -0.295 1.295 7 C -0.238 4.238 8 H 0.081 0.919 9 N -0.741 5.741 10 C 0.156 3.844 11 C -0.101 4.101 12 H 0.072 0.928 13 C -0.110 4.110 14 C -0.113 4.113 15 C -0.124 4.124 16 C 0.154 3.846 17 H 0.083 0.917 18 N -0.710 5.710 19 C 0.563 3.437 20 O -0.574 6.574 21 C -0.130 4.130 22 C -0.085 4.085 23 C -0.077 4.077 24 C 0.067 3.933 25 N -0.527 5.527 26 C 0.475 3.525 27 O -0.441 6.441 28 N -0.581 5.581 29 H 0.442 0.558 30 C 0.037 3.963 31 C -0.035 4.035 32 H 0.249 0.751 33 H 0.374 0.626 34 H 0.032 0.968 35 H 0.023 0.977 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.411 0.589 43 H 0.148 0.852 44 H 0.150 0.850 45 H 0.438 0.562 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.715 -21.778 0.629 27.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.268 4.268 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.226 1.226 6 H -0.222 1.222 7 C -0.370 4.370 8 H 0.098 0.902 9 N -0.383 5.383 10 C 0.030 3.970 11 C -0.120 4.120 12 H 0.091 0.909 13 C -0.148 4.148 14 C -0.151 4.151 15 C -0.163 4.163 16 C 0.049 3.951 17 H 0.101 0.899 18 N -0.363 5.363 19 C 0.352 3.648 20 O -0.455 6.455 21 C -0.135 4.135 22 C -0.106 4.106 23 C -0.096 4.096 24 C -0.052 4.052 25 N -0.260 5.260 26 C 0.170 3.830 27 O -0.247 6.247 28 N -0.207 5.207 29 H 0.285 0.715 30 C -0.072 4.072 31 C -0.056 4.056 32 H 0.058 0.942 33 H 0.206 0.794 34 H 0.049 0.951 35 H 0.040 0.960 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.251 0.749 43 H 0.165 0.835 44 H 0.168 0.832 45 H 0.301 0.699 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 17.135 -21.490 0.033 27.485 hybrid contribution -0.270 0.328 -0.166 0.456 sum 16.865 -21.162 -0.133 27.060 Atomic orbital electron populations 1.69817 1.06598 1.25826 1.59845 1.25516 0.96313 1.00973 1.04030 0.85139 0.78509 0.80138 0.76404 1.18724 1.22552 1.22248 1.19691 0.91665 0.85164 1.40494 0.90160 1.42530 1.05657 1.00934 1.89183 1.20860 0.93924 0.84613 0.97638 1.22117 0.97385 0.93122 0.99397 0.90932 1.22296 0.99743 0.97125 0.95619 1.22447 0.96931 0.93832 1.01898 1.22714 0.98104 0.99346 0.96121 1.21604 0.78901 0.95041 0.99565 0.89930 1.46284 1.07810 1.22616 1.59594 1.18245 0.86526 0.82965 0.77107 1.90734 1.77159 1.27994 1.49635 1.19547 0.92244 0.96804 1.04920 1.20918 0.95076 0.96019 0.98621 1.20111 0.91565 0.98828 0.99137 1.19255 0.89562 0.95050 1.01363 1.70635 1.13629 1.20142 1.21563 1.20435 0.82612 0.86662 0.93261 1.84797 1.18347 1.76250 1.45257 1.43294 1.05197 1.20887 1.51327 0.71521 1.18400 0.89830 0.95204 1.03811 1.19992 0.88289 0.99784 0.97567 0.94176 0.79393 0.95077 0.95953 0.92385 0.92063 0.90561 0.89990 0.90848 0.90835 0.74878 0.83489 0.83211 0.69853 0.83598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.58 13.06 21.65 0.28 -58.29 16 2 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 3 Si 0.97 45.43 29.55 68.60 2.03 47.45 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 7 C -0.24 -12.78 9.99 84.03 0.84 -11.94 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.74 -35.77 5.45 -343.45 -1.87 -37.64 16 10 C 0.16 5.68 4.18 86.38 0.36 6.04 16 11 C -0.10 -3.05 2.96 -10.07 -0.03 -3.08 16 12 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 13 C -0.11 -3.11 6.08 31.67 0.19 -2.92 16 14 C -0.11 -2.45 6.91 31.89 0.22 -2.23 16 15 C -0.12 -2.80 6.52 31.67 0.21 -2.59 16 16 C 0.15 4.06 3.21 45.72 0.15 4.20 16 17 H 0.08 2.34 7.61 -2.39 -0.02 2.32 16 18 N -0.71 -18.11 4.37 -442.29 -1.93 -20.04 16 19 C 0.56 15.20 7.75 86.69 0.67 15.87 16 20 O -0.57 -18.45 16.00 -4.02 -0.06 -18.51 16 21 C -0.13 -3.03 5.88 -20.06 -0.12 -3.15 16 22 C -0.09 -1.80 9.46 22.26 0.21 -1.59 16 23 C -0.08 -1.65 10.03 22.23 0.22 -1.43 16 24 C 0.07 1.56 7.22 39.61 0.29 1.84 16 25 N -0.53 -12.14 11.29 -306.25 -3.46 -15.60 16 26 C 0.48 7.65 9.39 179.75 1.69 9.34 16 27 O -0.44 -4.12 13.62 -84.84 -1.16 -5.28 16 28 N -0.58 -7.83 6.27 -302.69 -1.90 -9.73 16 29 H 0.44 2.74 8.96 -92.71 -0.83 1.91 16 30 C 0.04 0.73 7.29 38.69 0.28 1.01 16 31 C -0.03 -0.73 9.60 22.58 0.22 -0.51 16 32 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 33 H 0.37 19.50 7.55 -92.71 -0.70 18.80 16 34 H 0.03 1.07 7.12 -2.39 -0.02 1.06 16 35 H 0.02 0.83 7.40 -2.39 -0.02 0.81 16 36 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.06 1.86 7.77 -2.39 -0.02 1.85 16 38 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.07 1.61 8.05 -2.39 -0.02 1.59 16 42 H 0.41 9.87 3.84 -92.71 -0.36 9.51 16 43 H 0.15 2.73 6.36 -2.91 -0.02 2.71 16 44 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 45 H 0.44 -1.02 9.06 -74.06 -0.67 -1.69 16 46 H 0.15 2.80 7.64 -2.91 -0.02 2.78 16 Total: -1.00 -75.22 379.17 -3.69 -78.91 By element: Atomic # 1 Polarization: 35.17 SS G_CDS: -1.48 Total: 33.69 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 5.86 Total: 5.04 kcal Atomic # 7 Polarization: -132.43 SS G_CDS: -8.88 Total: -141.31 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -1.22 Total: -23.79 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -75.22 -3.69 -78.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753893187.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.253 kcal (2) G-P(sol) polarization free energy of solvation -75.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds