Wall clock time and date at job start Wed Apr 1 2020 02:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00054 * 2 1 4 4 H 1.48504 * 109.47394 * 270.00059 * 3 2 1 5 5 H 1.48496 * 109.47260 * 30.00503 * 3 2 1 6 6 H 1.48508 * 109.47223 * 150.00398 * 3 2 1 7 7 C 1.38819 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99742 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99938 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00241 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47631 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.46929 * 54.99020 * 11 10 9 13 13 C 1.53006 * 109.46623 * 294.99736 * 11 10 9 14 14 C 1.53002 * 109.46977 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.46637 * 59.99946 * 14 13 11 16 16 C 1.52996 * 109.47486 * 299.99742 * 15 14 13 17 17 C 1.52997 * 109.47317 * 174.99916 * 11 10 9 18 18 H 1.09002 * 109.47153 * 299.99641 * 17 11 10 19 19 N 1.46505 * 109.47212 * 59.99649 * 17 11 10 20 20 C 1.34769 * 119.99686 * 204.99833 * 19 17 11 21 21 O 1.21555 * 120.00387 * 359.97438 * 20 19 17 22 22 C 1.47811 * 119.99827 * 180.02562 * 20 19 17 23 23 C 1.41157 * 118.94325 * 0.02562 * 22 20 19 24 24 C 1.35402 * 121.75378 * 180.02562 * 23 22 20 25 25 C 1.45282 * 119.10304 * 359.97438 * 24 23 22 26 26 N 1.30879 * 138.53967 * 179.97438 * 25 24 23 27 27 O 1.21492 * 109.07727 * 180.02562 * 26 25 24 28 28 N 1.21479 * 116.30002 * 359.97438 * 27 26 25 29 29 C 1.31068 * 109.07661 * 0.02562 * 28 27 26 30 30 C 1.37764 * 118.94891 * 179.73112 * 22 20 19 31 31 H 0.97002 * 119.99936 * 359.97438 * 1 2 3 32 32 H 0.97006 * 119.99946 * 359.97438 * 9 7 2 33 33 H 1.09001 * 109.47360 * 59.99433 * 10 9 7 34 34 H 1.09006 * 109.46539 * 300.00172 * 10 9 7 35 35 H 1.09000 * 109.47050 * 59.99904 * 13 11 10 36 36 H 1.08993 * 109.46955 * 300.00075 * 13 11 10 37 37 H 1.08996 * 109.47407 * 300.00489 * 14 13 11 38 38 H 1.08992 * 109.47063 * 180.02562 * 14 13 11 39 39 H 1.09001 * 109.47109 * 179.97438 * 15 14 13 40 40 H 1.09004 * 109.47086 * 60.00158 * 15 14 13 41 41 H 1.08996 * 109.47452 * 300.00003 * 16 15 14 42 42 H 1.09000 * 109.47054 * 180.02562 * 16 15 14 43 43 H 0.97000 * 119.99634 * 25.00165 * 19 17 11 44 44 H 1.07995 * 119.12647 * 359.97169 * 23 22 20 45 45 H 1.07996 * 120.44454 * 180.02562 * 24 23 22 46 46 H 1.07999 * 120.14717 * 359.97438 * 30 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8198 -0.0012 12 1 0.3799 -4.7126 -0.8431 13 6 0.2685 -4.8115 1.3060 14 6 -0.7262 -5.9740 1.3051 15 6 0.0343 -7.2957 1.1791 16 6 0.8295 -7.3039 -0.1280 17 6 1.8246 -6.1412 -0.1269 18 1 2.3911 -6.1471 -1.0581 19 7 2.7438 -6.2851 1.0048 20 6 3.8431 -7.0556 0.8862 21 8 4.0717 -7.6316 -0.1595 22 6 4.7701 -7.2013 2.0282 23 6 4.4821 -6.5238 3.2326 24 6 5.2921 -6.6166 4.3136 25 6 6.4891 -7.4359 4.2315 26 7 7.4933 -7.7846 4.9950 27 8 8.2299 -8.5216 4.3703 28 7 7.9002 -8.7699 3.2277 29 6 6.7803 -8.1440 2.9594 30 6 5.8843 -7.9987 1.8850 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3881 0.0002 33 1 2.6847 -3.7146 0.8894 34 1 2.6846 -3.7145 -0.8906 35 1 -0.2735 -3.8701 1.3956 36 1 0.9524 -4.9185 2.1479 37 1 -1.4099 -5.8666 0.4632 38 1 -1.2929 -5.9679 2.2361 39 1 -0.6742 -8.1240 1.1789 40 1 0.7182 -7.4031 2.0211 41 1 0.1457 -7.1965 -0.9700 42 1 1.3708 -8.2457 -0.2180 43 1 2.5610 -5.8258 1.8394 44 1 3.5925 -5.9145 3.2932 45 1 5.0512 -6.0894 5.2249 46 1 6.0712 -8.5069 0.9506 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754348646.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:12 Heat of formation + Delta-G solvation = 104.401144 kcal Electronic energy + Delta-G solvation = -29961.998494 eV Core-core repulsion = 25856.875933 eV Total energy + Delta-G solvation = -4105.122561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -47.04103 -40.76799 -39.03609 -37.77728 -35.18514 -34.72882 -34.16055 -33.37911 -31.98387 -31.49569 -30.06148 -29.55352 -26.64632 -25.36512 -25.20943 -23.10319 -22.51249 -21.92008 -21.69759 -20.70071 -19.57390 -19.31174 -19.04082 -18.31199 -17.84477 -17.07909 -16.05564 -15.55134 -15.22262 -14.91185 -14.82982 -14.74154 -14.59061 -14.14351 -13.93969 -13.73488 -13.42943 -13.28375 -13.14945 -13.04573 -12.80211 -12.23728 -12.20864 -12.17314 -12.04952 -11.76517 -11.67374 -11.49117 -10.95172 -10.93885 -10.79048 -10.46277 -10.33641 -10.26917 -10.19056 -10.04769 -9.94789 -9.68777 -9.14473 -8.99549 -8.90181 -6.97150 -5.81784 -3.10277 -0.54730 0.49663 1.42391 2.29255 2.54377 2.84859 3.12352 3.19980 3.28485 3.40175 3.45912 3.46894 4.14579 4.20812 4.35823 4.49569 4.54933 4.74548 4.76765 4.80983 4.83914 5.07343 5.16447 5.24759 5.33005 5.46532 5.51311 5.52302 5.56331 5.59426 5.60487 5.66426 5.72633 5.83588 5.96249 6.05992 6.08247 6.16297 6.19041 6.28239 6.38033 6.43892 6.60177 6.73063 6.78356 7.32679 7.65661 7.98300 8.02164 8.37304 9.48834 10.05882 10.40455 11.40956 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009857 B = 0.002945 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.067629 B = 9505.593412 C =11366.966811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.730 5.730 10 C 0.159 3.841 11 C -0.103 4.103 12 H 0.088 0.912 13 C -0.110 4.110 14 C -0.122 4.122 15 C -0.116 4.116 16 C -0.129 4.129 17 C 0.154 3.846 18 H 0.092 0.908 19 N -0.704 5.704 20 C 0.557 3.443 21 O -0.531 6.531 22 C -0.094 4.094 23 C -0.071 4.071 24 C -0.057 4.057 25 C 0.024 3.976 26 N -0.342 5.342 27 O 0.377 5.623 28 N -0.333 5.333 29 C 0.012 3.988 30 C 0.001 3.999 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.017 0.983 34 H 0.018 0.982 35 H 0.080 0.920 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.401 0.599 44 H 0.149 0.851 45 H 0.156 0.844 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.456 -18.918 8.220 21.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.032 3.968 11 C -0.122 4.122 12 H 0.106 0.894 13 C -0.148 4.148 14 C -0.159 4.159 15 C -0.154 4.154 16 C -0.167 4.167 17 C 0.050 3.950 18 H 0.110 0.890 19 N -0.356 5.356 20 C 0.343 3.657 21 O -0.409 6.409 22 C -0.102 4.102 23 C -0.093 4.093 24 C -0.078 4.078 25 C -0.131 4.131 26 N -0.064 5.064 27 O 0.139 5.861 28 N -0.052 5.052 29 C -0.141 4.141 30 C -0.020 4.020 31 H 0.065 0.935 32 H 0.218 0.782 33 H 0.035 0.965 34 H 0.036 0.964 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.239 0.761 44 H 0.167 0.833 45 H 0.174 0.826 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.703 -19.641 7.918 22.213 hybrid contribution -0.601 1.609 0.073 1.719 sum 6.102 -18.032 7.992 20.646 Atomic orbital electron populations 1.69651 1.05078 1.25678 1.57759 1.24721 0.95507 0.97648 1.02974 0.86214 0.78657 0.83882 0.77576 1.21710 1.21764 1.20794 1.19209 0.90995 0.84182 1.42717 0.91309 1.42355 1.05816 0.99857 1.89468 1.20647 0.92965 0.85376 0.97838 1.21652 0.97880 0.93244 0.99414 0.89374 1.21539 0.97656 0.99164 0.96450 1.21594 0.98077 0.94417 1.01820 1.21501 0.98669 0.97619 0.97604 1.21918 0.97909 0.98435 0.98464 1.21061 0.89673 0.94808 0.89453 0.89035 1.46050 1.23488 1.48650 1.17443 1.17964 0.81076 0.79678 0.86994 1.90801 1.74461 1.46829 1.28816 1.19895 0.96175 0.99083 0.95043 1.21043 0.99696 0.97466 0.91046 1.20864 0.89345 0.97223 1.00327 1.24159 0.97514 1.01348 0.90034 1.75210 1.03409 1.08181 1.19569 1.85425 1.40440 1.44117 1.16166 1.75288 1.13207 1.18739 0.97988 1.22694 0.94558 0.98995 0.97838 1.20234 0.89600 0.95633 0.96539 0.93504 0.78187 0.96530 0.96385 0.90110 0.92865 0.91796 0.92188 0.92366 0.92356 0.90774 0.91632 0.76118 0.83318 0.82626 0.82130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.29 13.06 55.49 0.72 -26.57 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.24 -6.47 9.99 -15.06 -0.15 -6.62 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.73 -17.26 5.33 -59.91 -0.32 -17.58 16 10 C 0.16 2.91 5.42 -4.05 -0.02 2.89 16 11 C -0.10 -1.42 2.02 -90.62 -0.18 -1.60 16 12 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 13 C -0.11 -1.40 4.90 -26.73 -0.13 -1.53 16 14 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 15 C -0.12 -1.09 5.76 -26.73 -0.15 -1.25 16 16 C -0.13 -1.35 5.61 -26.71 -0.15 -1.49 16 17 C 0.15 1.85 2.23 -67.90 -0.15 1.70 16 18 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 19 N -0.70 -7.53 3.56 -54.74 -0.19 -7.72 16 20 C 0.56 6.53 7.72 -12.35 -0.10 6.43 16 21 O -0.53 -7.87 15.87 5.32 0.08 -7.79 16 22 C -0.09 -0.92 5.86 -105.05 -0.62 -1.54 16 23 C -0.07 -0.54 9.39 -39.49 -0.37 -0.91 16 24 C -0.06 -0.44 10.27 -37.80 -0.39 -0.83 16 25 C 0.02 0.24 7.94 -81.26 -0.65 -0.40 16 26 N -0.34 -3.59 12.28 32.76 0.40 -3.18 16 27 O 0.38 3.83 11.67 26.93 0.31 4.15 16 28 N -0.33 -3.63 12.29 31.88 0.39 -3.24 16 29 C 0.01 0.13 7.75 -83.07 -0.64 -0.52 16 30 C 0.00 0.01 9.60 -38.85 -0.37 -0.36 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 32 H 0.38 9.49 6.85 -40.82 -0.28 9.21 16 33 H 0.02 0.30 7.61 -51.93 -0.40 -0.09 16 34 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 1.26 7.18 -51.93 -0.37 0.89 16 36 H 0.05 0.60 6.50 -51.93 -0.34 0.26 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.52 7.61 -51.93 -0.39 0.13 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.40 3.66 4.56 -40.82 -0.19 3.48 16 44 H 0.15 0.82 6.23 -52.49 -0.33 0.49 16 45 H 0.16 0.82 8.06 -52.49 -0.42 0.39 16 46 H 0.16 1.60 7.52 -52.49 -0.39 1.20 16 LS Contribution 373.65 15.07 5.63 5.63 Total: -1.00 -31.48 373.65 -8.33 -39.80 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -6.01 Total: 7.48 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -4.33 Total: -7.90 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: 1.00 Total: -58.29 kcal Atomic # 8 Polarization: -4.04 SS G_CDS: 0.40 Total: -3.64 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.48 -8.33 -39.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754348646.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.206 kcal (2) G-P(sol) polarization free energy of solvation -31.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds