Wall clock time and date at job start Wed Apr 1 2020 02:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 120.00114 * 2 1 4 4 H 1.48497 * 109.46820 * 240.00061 * 3 2 1 5 5 H 1.48504 * 109.46899 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47284 * 119.99840 * 3 2 1 7 7 C 1.38807 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00187 * 179.97438 * 7 2 1 9 9 N 1.36944 * 120.00289 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00072 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47068 * 175.02590 * 10 9 7 12 12 N 1.46500 * 109.54005 * 305.58422 * 11 10 9 13 13 C 1.34777 * 120.00173 * 304.10077 * 12 11 10 14 14 O 1.21608 * 119.99941 * 354.70087 * 13 12 11 15 15 C 1.47391 * 120.00180 * 174.42162 * 13 12 11 16 16 N 1.31572 * 126.81931 * 359.96228 * 15 13 12 17 17 N 1.28388 * 111.96297 * 179.86909 * 16 15 13 18 18 H 0.96998 * 124.37487 * 180.19122 * 17 16 15 19 19 C 1.37047 * 111.25510 * 0.41526 * 17 16 15 20 20 C 1.39124 * 134.72604 * 179.78183 * 19 17 16 21 21 C 1.36681 * 119.78856 * 179.97438 * 20 19 17 22 22 C 1.38904 * 120.89262 * 0.03316 * 21 20 19 23 23 C 1.36721 * 120.51998 * 359.96152 * 22 21 20 24 24 C 1.39188 * 119.51137 * 0.02562 * 23 22 21 25 25 C 1.53175 * 109.54260 * 65.75814 * 11 10 9 26 26 C 1.53284 * 109.06099 * 176.85358 * 25 11 10 27 27 O 1.42902 * 109.46392 * 302.44575 * 26 25 11 28 28 C 1.42904 * 114.09483 * 61.15656 * 27 26 25 29 29 C 1.53087 * 109.41838 * 298.84561 * 28 27 26 30 30 H 0.96999 * 119.99501 * 359.97438 * 1 2 3 31 31 H 0.96995 * 119.99545 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.46887 * 55.02525 * 10 9 7 33 33 H 1.08998 * 109.47360 * 295.02284 * 10 9 7 34 34 H 0.96999 * 120.00449 * 124.10629 * 12 11 10 35 35 H 1.08002 * 120.10459 * 0.02562 * 20 19 17 36 36 H 1.08001 * 119.55800 * 179.97438 * 21 20 19 37 37 H 1.07996 * 119.74188 * 179.97438 * 22 21 20 38 38 H 1.08000 * 120.24150 * 180.02562 * 23 22 21 39 39 H 1.08997 * 109.52775 * 296.84385 * 25 11 10 40 40 H 1.08996 * 109.52390 * 57.03669 * 25 11 10 41 41 H 1.09005 * 109.45537 * 182.45031 * 26 25 11 42 42 H 1.08996 * 109.46905 * 62.44941 * 26 25 11 43 43 H 1.08998 * 109.48183 * 178.86206 * 28 27 26 44 44 H 1.08999 * 109.48987 * 58.83195 * 28 27 26 45 45 H 1.09001 * 109.52326 * 297.70472 * 29 28 27 46 46 H 1.08995 * 109.57874 * 177.54973 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0685 -4.8170 0.1256 12 7 0.2261 -4.6173 1.3075 13 6 0.7930 -4.4542 2.5193 14 8 1.9969 -4.5685 2.6478 15 6 -0.0454 -4.1311 3.6877 16 7 -1.3514 -3.9716 3.7011 17 7 -1.7896 -3.6981 4.8765 18 1 -2.7235 -3.5481 5.0916 19 6 -0.7671 -3.6405 5.7871 20 6 -0.6851 -3.3859 7.1524 21 6 0.5314 -3.4070 7.7752 22 6 1.6926 -3.6792 7.0631 23 6 1.6404 -3.9329 5.7206 24 6 0.4117 -3.9166 5.0670 25 6 0.1884 -4.8771 -1.1266 26 6 -0.7444 -6.0892 -1.0252 27 8 0.0341 -7.2775 -0.8698 28 6 0.8417 -7.2958 0.3090 29 6 1.8380 -6.1345 0.2615 30 1 -0.4849 0.8401 0.0004 31 1 0.3556 -2.3881 0.0005 32 1 2.7499 -3.6769 0.8426 33 1 2.6162 -3.7541 -0.9306 34 1 -0.7396 -4.6026 1.2179 35 1 -1.5799 -3.1731 7.7184 36 1 0.5908 -3.2084 8.8351 37 1 2.6440 -3.6907 7.5739 38 1 2.5460 -4.1445 5.1715 39 1 -0.4032 -3.9647 -1.2003 40 1 0.8187 -4.9760 -2.0104 41 1 -1.3434 -6.1632 -1.9329 42 1 -1.4021 -5.9704 -0.1643 43 1 1.3852 -8.2390 0.3626 44 1 0.2050 -7.1927 1.1877 45 1 2.5016 -6.2586 -0.5943 46 1 2.4260 -6.1199 1.1792 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755099791.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:41 Heat of formation + Delta-G solvation = 25.201036 kcal Electronic energy + Delta-G solvation = -31200.440303 eV Core-core repulsion = 27091.883368 eV Total energy + Delta-G solvation = -4108.556935 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.40473 -40.32936 -38.13948 -37.74196 -35.66930 -33.61499 -32.64919 -31.50999 -30.99398 -30.36270 -30.20017 -29.60205 -26.51462 -24.32681 -23.68613 -23.35286 -23.06136 -22.32807 -21.41943 -20.25867 -18.95059 -18.23978 -17.42813 -17.16425 -16.67382 -15.88901 -15.79139 -15.70476 -15.34150 -15.28349 -14.65675 -14.34498 -14.30274 -14.13462 -14.01037 -13.62245 -13.41626 -13.06809 -12.71247 -12.33504 -12.32902 -12.20475 -12.05109 -11.78647 -11.48892 -11.24508 -11.14194 -10.88683 -10.86760 -10.76265 -10.48662 -10.30231 -10.09096 -10.05597 -9.68192 -9.55918 -9.32503 -8.78864 -8.76184 -8.55231 -8.07755 -6.81376 -5.69834 -2.96109 0.85948 1.35689 2.02970 2.69729 3.34177 3.48409 3.51938 3.53667 3.57661 3.90114 4.00746 4.40178 4.50259 4.64301 4.77027 4.89266 4.93746 5.05731 5.14068 5.14798 5.19882 5.34027 5.37344 5.50621 5.53199 5.63984 5.66176 5.80197 5.82867 5.93953 5.99279 6.10274 6.14790 6.18566 6.28896 6.35410 6.41854 6.49820 6.51604 6.58709 6.77176 6.89968 7.00530 7.09150 7.31169 7.73320 7.77782 7.98782 8.49355 8.59041 9.60822 10.18574 10.54190 11.53173 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.007029 B = 0.005203 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3982.809137 B = 5379.960580 C = 8047.024045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.015 4.015 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.229 4.229 8 H 0.068 0.932 9 N -0.724 5.724 10 C 0.141 3.859 11 C 0.175 3.825 12 N -0.699 5.699 13 C 0.618 3.382 14 O -0.522 6.522 15 C 0.018 3.982 16 N -0.206 5.206 17 N -0.417 5.417 18 H 0.445 0.555 19 C 0.064 3.936 20 C -0.124 4.124 21 C -0.085 4.085 22 C -0.146 4.146 23 C -0.037 4.037 24 C -0.107 4.107 25 C -0.154 4.154 26 C 0.060 3.940 27 O -0.386 6.386 28 C 0.065 3.935 29 C -0.163 4.163 30 H 0.253 0.747 31 H 0.382 0.618 32 H 0.051 0.949 33 H 0.022 0.978 34 H 0.401 0.599 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.139 0.861 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.047 0.953 43 H 0.089 0.911 44 H 0.047 0.953 45 H 0.079 0.921 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.232 -13.686 11.317 18.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.360 4.360 8 H 0.086 0.914 9 N -0.369 5.369 10 C 0.013 3.987 11 C 0.089 3.911 12 N -0.350 5.350 13 C 0.402 3.598 14 O -0.396 6.396 15 C -0.154 4.154 16 N -0.035 5.035 17 N -0.136 5.136 18 H 0.290 0.710 19 C -0.050 4.050 20 C -0.145 4.145 21 C -0.106 4.106 22 C -0.165 4.165 23 C -0.057 4.057 24 C -0.114 4.114 25 C -0.192 4.192 26 C -0.017 4.017 27 O -0.304 6.304 28 C -0.011 4.011 29 C -0.202 4.202 30 H 0.062 0.938 31 H 0.216 0.784 32 H 0.068 0.932 33 H 0.040 0.960 34 H 0.236 0.764 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.157 0.843 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.065 0.935 43 H 0.108 0.892 44 H 0.065 0.935 45 H 0.097 0.903 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.142 -13.803 10.531 17.849 hybrid contribution -0.339 1.673 0.815 1.892 sum -4.481 -12.130 11.347 17.204 Atomic orbital electron populations 1.69647 1.04999 1.25421 1.58462 1.24669 0.95485 0.97448 1.03462 0.86299 0.78531 0.83768 0.77836 1.21326 1.21843 1.21410 1.19172 0.90969 0.84149 1.41735 0.91400 1.42206 1.05607 0.99674 1.89387 1.21093 0.93497 0.84938 0.99159 1.20631 0.91346 0.95481 0.83657 1.45741 1.10171 1.72970 1.06158 1.16420 0.86142 0.76336 0.80927 1.90715 1.13410 1.50834 1.84596 1.22905 0.89306 1.09018 0.94169 1.72900 1.13574 1.12054 1.04960 1.42980 1.09627 1.57964 1.03058 0.71027 1.19205 0.88516 1.04144 0.93086 1.19728 0.98998 1.05690 0.90088 1.20704 0.91714 0.98280 0.99892 1.20822 0.98639 1.02982 0.94063 1.20440 0.96417 0.95024 0.93867 1.19426 0.94019 1.06293 0.91685 1.22470 0.99542 0.99470 0.97762 1.22643 0.92822 0.84717 1.01482 1.87889 1.59479 1.39159 1.43919 1.22513 0.92531 0.98642 0.87444 1.22565 0.98999 0.93931 1.04741 0.93753 0.78428 0.93160 0.96041 0.76442 0.85639 0.85342 0.85385 0.84284 0.89102 0.89378 0.88783 0.93483 0.89249 0.93487 0.90254 0.88674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.59 13.06 55.49 0.72 -27.87 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.90 23.18 29.55 -169.99 -5.02 18.16 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 7 C -0.23 -6.60 9.99 -15.06 -0.15 -6.75 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.72 -18.52 5.21 -59.91 -0.31 -18.84 16 10 C 0.14 3.01 4.79 -4.04 -0.02 2.99 16 11 C 0.17 2.92 0.32 -131.64 -0.04 2.88 16 12 N -0.70 -11.73 3.75 -48.51 -0.18 -11.91 16 13 C 0.62 11.48 7.22 -12.53 -0.09 11.39 16 14 O -0.52 -10.61 12.70 5.27 0.07 -10.54 16 15 C 0.02 0.31 7.32 -80.76 -0.59 -0.28 16 16 N -0.21 -3.20 11.81 34.46 0.41 -2.79 16 17 N -0.42 -5.24 6.85 32.34 0.22 -5.02 16 18 H 0.45 3.75 8.96 -190.49 -1.71 2.05 16 19 C 0.06 0.85 7.38 -84.21 -0.62 0.23 16 20 C -0.12 -1.30 10.03 -39.82 -0.40 -1.70 16 21 C -0.09 -0.85 9.96 -39.90 -0.40 -1.25 16 22 C -0.15 -1.66 9.98 -39.88 -0.40 -2.06 16 23 C -0.04 -0.54 9.87 -39.78 -0.39 -0.94 16 24 C -0.11 -1.73 6.34 -105.05 -0.67 -2.39 16 25 C -0.15 -2.33 4.84 -26.49 -0.13 -2.46 16 26 C 0.06 0.77 6.67 37.30 0.25 1.02 16 27 O -0.39 -5.37 10.77 -35.23 -0.38 -5.75 16 28 C 0.07 0.85 6.68 37.20 0.25 1.10 16 29 C -0.16 -2.41 4.82 -26.60 -0.13 -2.54 16 30 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.38 10.08 6.51 -40.82 -0.27 9.81 16 32 H 0.05 1.18 6.25 -51.93 -0.32 0.85 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.40 6.23 7.15 -40.82 -0.29 5.94 16 35 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 37 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.14 2.08 7.65 -52.49 -0.40 1.68 16 39 H 0.09 1.52 7.22 -51.93 -0.37 1.14 16 40 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.05 0.57 7.01 -51.93 -0.36 0.20 16 43 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.05 0.62 7.75 -51.93 -0.40 0.22 16 45 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.09 1.52 6.25 -51.93 -0.32 1.19 16 LS Contribution 372.51 15.07 5.61 5.61 Total: -1.00 -34.87 372.51 -9.87 -44.74 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: -7.39 Total: 15.49 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -3.62 Total: -1.29 kcal Atomic # 7 Polarization: -67.28 SS G_CDS: 0.86 Total: -66.42 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.31 Total: -16.29 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.02 Total: 18.16 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.87 -9.87 -44.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755099791.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.940 kcal (2) G-P(sol) polarization free energy of solvation -34.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds