Wall clock time and date at job start Wed Apr 1 2020 02:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35979 * 116.99857 * 2 1 4 4 C 1.38715 * 120.00285 * 0.02562 * 3 2 1 5 5 C 1.38118 * 120.00080 * 180.02562 * 4 3 2 6 6 C 1.38717 * 119.99870 * 0.25914 * 5 4 3 7 7 O 1.35980 * 120.00075 * 179.69918 * 6 5 4 8 8 C 1.42903 * 117.00000 * 359.97438 * 7 6 5 9 9 C 1.38680 * 120.00116 * 359.42113 * 6 5 4 10 10 C 1.50700 * 120.00427 * 180.30240 * 9 6 5 11 11 H 1.09000 * 109.47180 * 35.29292 * 10 9 6 12 12 O 1.42897 * 109.47319 * 155.29874 * 10 9 6 13 13 C 1.53005 * 109.46549 * 275.29908 * 10 9 6 14 14 N 1.46504 * 109.46650 * 179.97438 * 13 10 9 15 15 C 1.38820 * 119.99821 * 180.02562 * 14 13 10 16 16 C 1.39796 * 119.58526 * 359.97438 * 15 14 13 17 17 C 1.38596 * 119.49226 * 179.97438 * 16 15 14 18 18 C 1.38385 * 118.68253 * 0.02562 * 17 16 15 19 19 C 1.40563 * 119.14500 * 359.97438 * 18 17 16 20 20 C 1.41324 * 119.78208 * 180.02562 * 19 18 17 21 21 H 1.08004 * 119.99844 * 0.02562 * 20 19 18 22 22 C 1.40025 * 120.00050 * 180.02562 * 20 19 18 23 23 N 1.30746 * 119.99670 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 119.99941 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47319 * 89.99745 * 24 22 20 26 26 H 1.48502 * 109.46783 * 209.99857 * 24 22 20 27 27 H 1.48502 * 109.47281 * 329.99346 * 24 22 20 28 28 N 1.31956 * 119.58539 * 179.72280 * 15 14 13 29 29 C 1.38162 * 119.99600 * 0.59787 * 9 6 5 30 30 H 1.09001 * 109.47143 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46569 * 299.99701 * 1 2 3 32 32 H 1.08997 * 109.47244 * 59.99416 * 1 2 3 33 33 H 1.07999 * 119.99895 * 0.02562 * 4 3 2 34 34 H 1.08002 * 119.99729 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.46989 * 300.00188 * 8 7 6 36 36 H 1.08998 * 109.46866 * 59.99983 * 8 7 6 37 37 H 1.08994 * 109.47633 * 179.97438 * 8 7 6 38 38 H 0.96695 * 114.00369 * 59.99830 * 12 10 9 39 39 H 1.09000 * 109.46877 * 299.99570 * 13 10 9 40 40 H 1.09000 * 109.47120 * 59.99733 * 13 10 9 41 41 H 0.97002 * 120.00003 * 359.97438 * 14 13 10 42 42 H 1.08001 * 120.25676 * 359.96001 * 16 15 14 43 43 H 1.08000 * 120.65975 * 180.02562 * 17 16 15 44 44 H 1.07998 * 120.42635 * 179.97438 * 18 17 16 45 45 H 0.96996 * 119.99659 * 179.97438 * 23 22 20 46 46 H 1.08001 * 119.99592 * 179.68603 * 29 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2909 2.3750 0.0005 5 6 1.9179 3.6056 0.0000 6 6 3.3032 3.6782 -0.0065 7 8 3.9206 4.8897 -0.0132 8 6 3.0806 6.0459 -0.0137 9 6 4.0585 2.5151 -0.0003 10 6 5.5635 2.5939 -0.0005 11 1 5.8824 3.4536 0.5888 12 8 6.1031 1.3995 0.5688 13 6 6.0659 2.7461 -1.4377 14 7 7.5289 2.8234 -1.4378 15 6 8.2163 2.9649 -2.6355 16 6 7.5039 3.0324 -3.8364 17 6 8.1921 3.1743 -5.0310 18 6 9.5738 3.2448 -4.9973 19 6 10.2329 3.1711 -3.7579 20 6 11.6434 3.2422 -3.7077 21 1 12.2113 3.3532 -4.6197 22 6 12.3048 3.1688 -2.4757 23 7 11.6172 3.0349 -1.3717 24 14 14.1691 3.2635 -2.4093 25 1 14.5881 4.6811 -2.2684 26 1 14.6632 2.4833 -1.2463 27 1 14.7382 2.7011 -3.6603 28 7 9.5338 3.0392 -2.6257 29 6 3.4312 1.2841 -0.0002 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 0.2124 2.3185 0.0014 34 1 1.3297 4.5114 0.0000 35 1 2.4477 6.0347 -0.9010 36 1 2.4551 6.0408 0.8789 37 1 3.6984 6.9438 -0.0189 38 1 5.8596 0.5928 0.0945 39 1 5.7470 1.8864 -2.0270 40 1 5.6542 3.6572 -1.8719 41 1 8.0171 2.7763 -0.6010 42 1 6.4255 2.9742 -3.8334 43 1 7.6607 3.2288 -5.9697 44 1 10.1383 3.3549 -5.9113 45 1 12.0753 2.9836 -0.5183 46 1 4.0195 0.3784 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771623236.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:16 Heat of formation + Delta-G solvation = -74.652772 kcal Electronic energy + Delta-G solvation = -29390.799934 eV Core-core repulsion = 25245.620262 eV Total energy + Delta-G solvation = -4145.179672 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.69546 -40.18885 -39.92518 -38.95746 -37.02908 -36.17014 -34.97218 -32.84544 -32.25696 -31.31884 -30.69548 -28.62819 -28.02226 -27.75583 -27.21203 -24.72923 -23.37458 -23.06219 -22.19239 -22.04800 -19.60191 -19.20973 -18.55427 -18.20726 -17.97530 -17.33715 -16.81034 -16.52775 -16.47349 -16.41124 -16.27235 -15.81121 -15.68726 -15.48630 -15.03636 -14.90038 -14.72342 -14.40576 -14.08446 -13.72747 -13.63973 -13.61075 -13.43323 -13.13186 -12.81997 -12.74473 -12.69371 -12.58039 -12.46857 -12.31480 -12.12717 -11.83967 -11.72345 -11.35080 -11.30240 -11.19589 -10.67483 -10.00524 -9.83162 -9.42836 -8.74154 -8.29141 -8.20666 -6.46737 0.11851 0.40797 1.07346 1.35508 1.42159 1.55945 1.59900 2.26356 2.29913 2.40600 2.52162 2.72167 2.94152 3.35426 3.60713 3.72468 3.88164 4.01885 4.09105 4.14172 4.19291 4.25812 4.38154 4.39548 4.41583 4.42992 4.48466 4.60909 4.68932 4.73946 4.77286 4.78936 4.82145 4.99820 5.01395 5.10827 5.15182 5.19887 5.27898 5.37860 5.50705 5.72388 5.96929 6.07129 6.24024 6.31601 6.49799 6.54700 6.64888 6.84846 6.95501 7.22987 8.36149 8.53331 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015980 B = 0.002354 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.717693 B =11894.145784 C =12010.281422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.085 3.915 4 C -0.162 4.162 5 C -0.164 4.164 6 C 0.092 3.908 7 O -0.336 6.336 8 C 0.019 3.981 9 C -0.119 4.119 10 C 0.164 3.836 11 H 0.105 0.895 12 O -0.560 6.560 13 C 0.127 3.873 14 N -0.727 5.727 15 C 0.396 3.604 16 C -0.368 4.368 17 C -0.029 4.029 18 C -0.343 4.343 19 C 0.257 3.743 20 C -0.470 4.470 21 H 0.088 0.912 22 C 0.023 3.977 23 N -0.752 5.752 24 Si 0.987 3.013 25 H -0.263 1.263 26 H -0.269 1.269 27 H -0.255 1.255 28 N -0.565 5.565 29 C -0.115 4.115 30 H 0.116 0.884 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.160 0.840 34 H 0.160 0.840 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.385 0.615 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.394 0.606 42 H 0.113 0.887 43 H 0.130 0.870 44 H 0.104 0.896 45 H 0.276 0.724 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.577 -0.175 6.270 25.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.040 3.960 4 C -0.180 4.180 5 C -0.183 4.183 6 C 0.046 3.954 7 O -0.250 6.250 8 C -0.076 4.076 9 C -0.121 4.121 10 C 0.104 3.896 11 H 0.123 0.877 12 O -0.367 6.367 13 C 0.002 3.998 14 N -0.363 5.363 15 C 0.155 3.845 16 C -0.394 4.394 17 C -0.054 4.054 18 C -0.366 4.366 19 C 0.130 3.870 20 C -0.502 4.502 21 H 0.106 0.894 22 C -0.198 4.198 23 N -0.374 5.374 24 Si 0.807 3.193 25 H -0.188 1.188 26 H -0.194 1.194 27 H -0.179 1.179 28 N -0.288 5.288 29 C -0.133 4.133 30 H 0.134 0.866 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.178 0.822 34 H 0.177 0.823 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.126 0.874 38 H 0.236 0.764 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.229 0.771 42 H 0.131 0.869 43 H 0.147 0.853 44 H 0.122 0.878 45 H 0.086 0.914 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -23.810 0.037 7.614 24.998 hybrid contribution -0.144 -0.022 -0.899 0.910 sum -23.954 0.015 6.715 24.878 Atomic orbital electron populations 1.23341 0.76475 1.05538 1.02284 1.86070 1.23402 1.26393 1.89186 1.18902 0.91920 0.85185 1.00031 1.21363 1.01406 0.90875 1.04378 1.21303 0.92296 0.99770 1.04916 1.18827 0.91639 0.85129 0.99765 1.86115 1.37080 1.12928 1.88902 1.23325 0.96232 0.85547 1.02457 1.19445 0.95274 0.91337 1.06050 1.20542 0.87727 0.88708 0.92630 0.87734 1.86618 1.76279 1.16750 1.57102 1.21755 0.79923 1.01229 0.96920 1.44140 1.04794 1.81851 1.05469 1.18950 0.89795 0.89423 0.86328 1.20908 0.98810 1.27247 0.92428 1.20994 0.93537 0.93543 0.97278 1.21691 0.95143 1.21944 0.97798 1.18717 0.94130 0.87330 0.86799 1.19940 0.90808 1.44705 0.94765 0.89428 1.27002 1.05600 0.92621 0.94595 1.70266 1.38778 1.29380 0.98949 0.85146 0.75733 0.79234 0.79143 1.18796 1.19376 1.17904 1.68191 1.04144 1.26332 1.30128 1.20059 0.92343 0.97256 1.03662 0.86611 0.91538 0.91631 0.82239 0.82276 0.91399 0.91107 0.87380 0.76441 0.92340 0.92244 0.77139 0.86876 0.85266 0.87808 0.91386 0.83983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.34 -6.34 10.50 -93.31 -0.98 -7.32 16 3 C 0.08 1.72 6.68 22.49 0.15 1.87 16 4 C -0.16 -2.61 9.03 22.36 0.20 -2.41 16 5 C -0.16 -2.82 9.03 22.36 0.20 -2.62 16 6 C 0.09 2.11 6.66 22.49 0.15 2.26 16 7 O -0.34 -7.95 9.63 -93.33 -0.90 -8.85 16 8 C 0.02 0.26 9.81 113.37 1.11 1.38 16 9 C -0.12 -3.01 5.08 -19.78 -0.10 -3.11 16 10 C 0.16 4.77 3.01 29.85 0.09 4.86 16 11 H 0.10 3.32 7.70 -2.39 -0.02 3.30 16 12 O -0.56 -16.49 12.73 -148.98 -1.90 -18.39 16 13 C 0.13 4.28 4.53 86.38 0.39 4.67 16 14 N -0.73 -31.58 5.61 -344.97 -1.94 -33.52 16 15 C 0.40 20.54 7.65 133.42 1.02 21.56 16 16 C -0.37 -17.51 9.34 22.73 0.21 -17.29 16 17 C -0.03 -1.39 10.15 22.39 0.23 -1.16 16 18 C -0.34 -18.16 9.83 22.87 0.22 -17.94 16 19 C 0.26 15.28 6.55 40.18 0.26 15.54 16 20 C -0.47 -26.98 9.14 23.46 0.21 -26.77 16 21 H 0.09 4.70 7.85 -2.91 -0.02 4.68 16 22 C 0.02 1.26 5.50 85.29 0.47 1.73 16 23 N -0.75 -42.51 11.46 21.84 0.25 -42.26 16 24 Si 0.99 40.03 29.56 68.60 2.03 42.06 16 25 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 26 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 27 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 28 N -0.57 -33.45 7.89 -186.58 -1.47 -34.93 16 29 C -0.11 -2.63 9.24 22.36 0.21 -2.43 16 30 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.46 7.66 -2.39 -0.02 0.44 16 32 H 0.07 0.48 7.66 -2.39 -0.02 0.46 16 33 H 0.16 1.53 6.29 -2.91 -0.02 1.51 16 34 H 0.16 1.76 6.29 -2.91 -0.02 1.74 16 35 H 0.07 0.77 7.66 -2.39 -0.02 0.75 16 36 H 0.07 0.73 7.66 -2.39 -0.02 0.72 16 37 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.39 9.01 7.32 -74.06 -0.54 8.47 16 39 H 0.06 1.91 7.92 -2.39 -0.02 1.89 16 40 H 0.06 2.06 7.92 -2.39 -0.02 2.04 16 41 H 0.39 17.89 8.47 -92.71 -0.79 17.11 16 42 H 0.11 4.71 6.68 -2.91 -0.02 4.69 16 43 H 0.13 5.00 8.06 -2.91 -0.02 4.98 16 44 H 0.10 5.10 8.06 -2.91 -0.02 5.08 16 45 H 0.28 14.14 8.29 -92.71 -0.77 13.38 16 46 H 0.14 2.97 6.40 -2.91 -0.02 2.96 16 Total: -1.00 -75.10 383.92 0.95 -74.15 By element: Atomic # 1 Polarization: 47.93 SS G_CDS: -0.29 Total: 47.64 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: 6.15 Total: -18.59 kcal Atomic # 7 Polarization: -107.55 SS G_CDS: -3.16 Total: -110.71 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -3.78 Total: -34.55 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Total: -75.10 0.95 -74.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771623236.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.505 kcal (2) G-P(sol) polarization free energy of solvation -75.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds