Wall clock time and date at job start Wed Apr 1 2020 03:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47239 * 39.99407 * 3 2 1 5 5 N 1.46496 * 109.47131 * 179.97438 * 4 3 2 6 6 C 1.46499 * 120.00570 * 270.94363 * 5 4 3 7 7 C 1.50696 * 109.47219 * 278.11300 * 6 5 4 8 8 H 1.08001 * 119.99996 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00168 * 179.97438 * 7 6 5 10 10 N 1.31507 * 120.00119 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99959 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46790 * 90.00426 * 11 9 7 13 13 H 1.48493 * 109.47124 * 210.00357 * 11 9 7 14 14 H 1.48501 * 109.47027 * 330.00839 * 11 9 7 15 15 C 1.34783 * 119.99820 * 90.94172 * 5 4 3 16 16 O 1.21597 * 119.99753 * 6.06293 * 15 5 4 17 17 C 1.47544 * 119.99943 * 186.05717 * 15 5 4 18 18 C 1.40355 * 120.47161 * 150.27515 * 17 15 5 19 19 C 1.36855 * 118.49145 * 180.02562 * 18 17 15 20 20 C 1.39399 * 119.37946 * 359.97438 * 19 18 17 21 21 N 1.38456 * 119.54151 * 179.97438 * 20 19 18 22 22 C 1.47022 * 110.99878 * 303.66089 * 21 20 19 23 23 C 1.53095 * 109.25575 * 177.60380 * 22 21 20 24 24 O 1.43018 * 109.25748 * 56.85054 * 23 22 21 25 25 C 1.43018 * 113.73723 * 301.32617 * 24 23 22 26 26 C 1.47009 * 111.00242 * 180.02562 * 21 20 19 27 27 N 1.32602 * 120.91884 * 0.02562 * 20 19 18 28 28 C 1.31676 * 121.64216 * 0.02562 * 27 20 19 29 29 H 1.09000 * 109.47005 * 279.99762 * 3 2 1 30 30 H 1.09005 * 109.47217 * 159.99753 * 3 2 1 31 31 H 1.09000 * 109.46832 * 60.00249 * 4 3 2 32 32 H 1.08993 * 109.47182 * 299.99938 * 4 3 2 33 33 H 1.09002 * 109.46610 * 38.11247 * 6 5 4 34 34 H 1.09000 * 109.47683 * 158.11025 * 6 5 4 35 35 H 0.97001 * 120.00273 * 179.97438 * 10 9 7 36 36 H 1.08000 * 120.75409 * 359.74615 * 18 17 15 37 37 H 1.07991 * 120.31025 * 180.02562 * 19 18 17 38 38 H 1.08996 * 109.50355 * 297.53805 * 22 21 20 39 39 H 1.08998 * 109.50264 * 57.66802 * 22 21 20 40 40 H 1.08994 * 109.50924 * 296.91673 * 23 22 21 41 41 H 1.09005 * 109.54076 * 176.80234 * 23 22 21 42 42 H 1.08999 * 109.50769 * 298.73357 * 25 24 23 43 43 H 1.09000 * 109.53945 * 178.63090 * 25 24 23 44 44 H 1.09005 * 109.50717 * 302.32618 * 26 21 20 45 45 H 1.09002 * 109.51036 * 62.41283 * 26 21 20 46 46 H 1.08005 * 119.74166 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.1043 -0.9271 5 7 4.5835 -1.1032 -0.9276 6 6 5.3152 -0.2715 -1.8863 7 6 5.3929 -0.9835 -3.2122 8 1 4.9426 -1.9582 -3.3290 9 6 6.0388 -0.3905 -4.2763 10 7 6.5875 0.7961 -4.1340 11 14 6.1357 -1.2734 -5.9197 12 1 4.9600 -0.9057 -6.7492 13 1 7.3815 -0.8753 -6.6228 14 1 6.1422 -2.7411 -5.6935 15 6 5.2582 -1.8674 -0.0459 16 8 4.6560 -2.6397 0.6748 17 6 6.7274 -1.7668 0.0447 18 6 7.3844 -2.0175 1.2594 19 6 8.7484 -1.9120 1.2977 20 6 9.4401 -1.5622 0.1391 21 7 10.8200 -1.4540 0.1742 22 6 11.2472 -0.4944 1.2029 23 6 12.7768 -0.4504 1.2482 24 8 13.2776 -0.1131 -0.0483 25 6 12.8812 -1.0273 -1.0743 26 6 11.3526 -1.0771 -1.1431 27 7 8.7948 -1.3305 -0.9959 28 6 7.4836 -1.4201 -1.0758 29 1 2.9714 -0.1776 1.0121 30 1 2.9709 0.9665 -0.3515 31 1 2.7551 -0.9260 -1.9392 32 1 2.7557 -2.0700 -0.5756 33 1 4.7959 0.6783 -2.0138 34 1 6.3227 -0.0875 -1.5131 35 1 7.0422 1.2131 -4.8825 36 1 6.8260 -2.2831 2.1448 37 1 9.2839 -2.0989 2.2167 38 1 10.8616 0.4957 0.9595 39 1 10.8631 -0.8067 2.1739 40 1 13.1605 -1.4268 1.5438 41 1 13.0988 0.3008 1.9694 42 1 13.2679 -2.0205 -0.8461 43 1 13.2781 -0.6936 -2.0331 44 1 11.0456 -1.8148 -1.8845 45 1 10.9681 -0.0967 -1.4243 46 1 6.9895 -1.2252 -2.0162 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000742360708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:09 Heat of formation + Delta-G solvation = 25.060270 kcal Electronic energy + Delta-G solvation = -30189.399070 eV Core-core repulsion = 26080.836031 eV Total energy + Delta-G solvation = -4108.563039 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.84701 -39.68671 -38.45353 -36.69897 -35.74636 -35.43217 -33.17949 -32.37625 -31.69080 -31.20516 -29.97318 -27.62155 -27.21351 -24.66337 -24.32471 -23.43623 -22.56349 -22.27332 -20.57387 -19.15599 -17.70535 -17.58157 -17.07824 -16.77077 -16.43949 -16.05091 -15.47383 -15.34528 -15.15470 -15.01559 -14.75537 -14.68255 -14.51627 -14.21708 -13.96659 -13.70830 -13.12578 -13.04192 -12.87322 -12.58473 -12.48933 -12.39306 -12.24534 -12.16327 -11.67505 -11.63559 -11.51016 -11.17555 -11.11600 -10.88956 -10.72220 -10.62150 -10.33050 -10.12286 -9.95930 -9.69486 -9.55328 -9.25950 -8.93293 -8.74904 -8.06965 -7.90418 -6.40686 -4.52218 1.09785 1.65076 2.81155 2.92020 3.14358 3.18719 3.23198 3.26978 3.48819 3.59552 3.71178 4.15745 4.22701 4.31387 4.55014 4.77702 4.85250 4.91641 4.97374 5.07939 5.13274 5.17322 5.23281 5.28069 5.32253 5.33085 5.39932 5.46399 5.48945 5.61800 5.63003 5.83634 5.97244 6.00429 6.05553 6.22862 6.29366 6.39106 6.46667 6.67514 6.84823 6.93810 6.94531 7.23239 7.30792 7.54040 7.67879 7.75239 8.04927 8.33754 8.55641 8.74704 9.18149 10.63534 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009769 B = 0.003604 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.465000 B = 7767.781337 C = 9890.511264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.221 3.779 3 C -0.046 4.046 4 C 0.126 3.874 5 N -0.589 5.589 6 C 0.208 3.792 7 C -0.557 4.557 8 H 0.069 0.931 9 C 0.075 3.925 10 N -0.873 5.873 11 Si 0.898 3.102 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.270 1.270 15 C 0.568 3.432 16 O -0.565 6.565 17 C -0.219 4.219 18 C -0.005 4.005 19 C -0.211 4.211 20 C 0.319 3.681 21 N -0.478 5.478 22 C 0.021 3.979 23 C 0.065 3.935 24 O -0.385 6.385 25 C 0.061 3.939 26 C 0.029 3.971 27 N -0.520 5.520 28 C 0.154 3.846 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.040 0.960 34 H 0.063 0.937 35 H 0.271 0.729 36 H 0.138 0.862 37 H 0.132 0.868 38 H 0.057 0.943 39 H 0.094 0.906 40 H 0.061 0.939 41 H 0.102 0.898 42 H 0.058 0.942 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.065 0.935 46 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.369 -0.532 9.097 13.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.097 4.097 3 C -0.087 4.087 4 C 0.001 3.999 5 N -0.319 5.319 6 C 0.089 3.911 7 C -0.594 4.594 8 H 0.087 0.913 9 C -0.132 4.132 10 N -0.508 5.508 11 Si 0.724 3.276 12 H -0.203 1.203 13 H -0.208 1.208 14 H -0.194 1.194 15 C 0.357 3.643 16 O -0.446 6.446 17 C -0.225 4.225 18 C -0.031 4.031 19 C -0.233 4.233 20 C 0.087 3.913 21 N -0.196 5.196 22 C -0.105 4.105 23 C -0.012 4.012 24 O -0.304 6.304 25 C -0.016 4.016 26 C -0.099 4.099 27 N -0.234 5.234 28 C -0.002 4.002 29 H 0.125 0.875 30 H 0.131 0.869 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.156 0.844 37 H 0.150 0.850 38 H 0.075 0.925 39 H 0.112 0.888 40 H 0.079 0.921 41 H 0.120 0.880 42 H 0.076 0.924 43 H 0.121 0.879 44 H 0.117 0.883 45 H 0.084 0.916 46 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 9.332 -0.811 8.709 12.790 hybrid contribution -0.392 -0.165 -0.372 0.565 sum 8.940 -0.975 8.337 12.263 Atomic orbital electron populations 1.81179 1.13059 1.09175 1.09255 1.29072 0.95086 0.92765 0.92735 1.19771 0.81396 1.03552 1.03970 1.21133 0.81079 0.97852 0.99876 1.48015 1.05479 1.44176 1.34186 1.20313 0.93622 0.90599 0.86575 1.21437 1.37843 1.05113 0.95046 0.91299 1.24982 0.94354 0.94705 0.99167 1.69902 1.34039 1.14333 1.32577 0.86477 0.77874 0.80257 0.82963 1.20284 1.20756 1.19448 1.17986 0.86554 0.79974 0.79742 1.90703 1.70034 1.38500 1.45347 1.20853 0.94907 1.10423 0.96359 1.21134 0.93515 0.91334 0.97154 1.21038 0.94449 1.09042 0.98809 1.20088 0.88790 0.92012 0.90393 1.59176 1.06203 1.45950 1.08255 1.22956 0.97405 0.94460 0.95665 1.22672 0.91337 1.01559 0.85669 1.87998 1.73885 1.51551 1.16941 1.22807 0.93372 0.93641 0.91808 1.22690 0.94512 1.02887 0.89765 1.68010 1.11180 1.18356 1.25824 1.25578 0.87726 0.85274 1.01631 0.87466 0.86923 0.88909 0.89677 0.94200 0.92028 0.91930 0.84450 0.84995 0.92494 0.88796 0.92106 0.88022 0.92372 0.87928 0.88274 0.91646 0.75130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.36 18.54 42.15 0.78 -6.57 16 2 C 0.22 3.10 15.43 -20.76 -0.32 2.78 16 3 C -0.05 -0.56 6.03 -29.52 -0.18 -0.74 16 4 C 0.13 1.93 5.42 -4.04 -0.02 1.91 16 5 N -0.59 -10.64 2.46 -176.29 -0.43 -11.07 16 6 C 0.21 4.24 4.65 -5.20 -0.02 4.22 16 7 C -0.56 -12.68 7.47 -34.44 -0.26 -12.94 16 8 H 0.07 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.07 1.76 5.33 -17.82 -0.10 1.67 16 10 N -0.87 -21.52 13.29 55.43 0.74 -20.78 16 11 Si 0.90 19.00 29.54 -169.99 -5.02 13.98 16 12 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 13 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 14 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 15 C 0.57 10.76 7.47 -12.46 -0.09 10.66 16 16 O -0.56 -11.50 16.30 5.28 0.09 -11.41 16 17 C -0.22 -3.99 5.59 -104.82 -0.59 -4.57 16 18 C 0.00 -0.08 9.67 -39.29 -0.38 -0.46 16 19 C -0.21 -2.97 9.14 -39.65 -0.36 -3.33 16 20 C 0.32 5.05 6.39 -155.28 -0.99 4.06 16 21 N -0.48 -6.41 4.74 -172.92 -0.82 -7.23 16 22 C 0.02 0.23 5.39 -3.71 -0.02 0.21 16 23 C 0.06 0.59 7.01 37.21 0.26 0.86 16 24 O -0.39 -4.50 10.83 -35.23 -0.38 -4.88 16 25 C 0.06 0.66 7.01 37.21 0.26 0.92 16 26 C 0.03 0.38 4.81 -3.71 -0.02 0.37 16 27 N -0.52 -9.70 8.66 -12.14 -0.11 -9.81 16 28 C 0.15 3.01 8.66 -17.13 -0.15 2.87 16 29 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.09 1.43 8.08 -51.93 -0.42 1.01 16 32 H 0.08 1.34 7.32 -51.93 -0.38 0.96 16 33 H 0.04 0.83 8.13 -51.93 -0.42 0.41 16 34 H 0.06 1.33 4.09 -51.94 -0.21 1.12 16 35 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 36 H 0.14 1.88 7.98 -52.49 -0.42 1.46 16 37 H 0.13 1.45 7.16 -52.49 -0.38 1.07 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.82 6.80 -51.93 -0.35 0.47 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.10 1.42 7.85 -51.93 -0.41 1.01 16 45 H 0.07 1.00 8.02 -51.93 -0.42 0.59 16 46 H 0.23 5.07 3.03 -52.48 -0.16 4.91 16 LS Contribution 382.72 15.07 5.77 5.77 Total: -1.00 -28.26 382.72 -8.43 -36.69 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -6.07 Total: 6.86 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: -2.98 Total: 8.46 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: 0.16 Total: -55.47 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.30 Total: -16.29 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.02 Total: 13.98 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.26 -8.43 -36.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742360708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.750 kcal (2) G-P(sol) polarization free energy of solvation -28.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds