Wall clock time and date at job start Wed Apr 1 2020 03:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47239 * 39.99407 * 3 2 1 5 5 N 1.46496 * 109.47131 * 179.97438 * 4 3 2 6 6 C 1.46499 * 120.00570 * 270.94363 * 5 4 3 7 7 C 1.50696 * 109.47219 * 278.11300 * 6 5 4 8 8 H 1.08001 * 119.99996 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00168 * 179.97438 * 7 6 5 10 10 N 1.31507 * 120.00119 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99959 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46790 * 90.00426 * 11 9 7 13 13 H 1.48493 * 109.47124 * 210.00357 * 11 9 7 14 14 H 1.48501 * 109.47027 * 330.00839 * 11 9 7 15 15 C 1.34783 * 119.99820 * 90.94172 * 5 4 3 16 16 O 1.21597 * 119.99753 * 6.06293 * 15 5 4 17 17 C 1.47544 * 119.99943 * 186.05717 * 15 5 4 18 18 C 1.40355 * 120.47161 * 150.27515 * 17 15 5 19 19 C 1.36855 * 118.49145 * 180.02562 * 18 17 15 20 20 C 1.39399 * 119.37946 * 359.97438 * 19 18 17 21 21 N 1.38456 * 119.54151 * 179.97438 * 20 19 18 22 22 C 1.47022 * 110.99878 * 303.66089 * 21 20 19 23 23 C 1.53095 * 109.25575 * 177.60380 * 22 21 20 24 24 O 1.43018 * 109.25748 * 56.85054 * 23 22 21 25 25 C 1.43018 * 113.73723 * 301.32617 * 24 23 22 26 26 C 1.47009 * 111.00242 * 180.02562 * 21 20 19 27 27 N 1.32602 * 120.91884 * 0.02562 * 20 19 18 28 28 C 1.31676 * 121.64216 * 0.02562 * 27 20 19 29 29 H 1.09000 * 109.47005 * 279.99762 * 3 2 1 30 30 H 1.09005 * 109.47217 * 159.99753 * 3 2 1 31 31 H 1.09000 * 109.46832 * 60.00249 * 4 3 2 32 32 H 1.08993 * 109.47182 * 299.99938 * 4 3 2 33 33 H 1.09002 * 109.46610 * 38.11247 * 6 5 4 34 34 H 1.09000 * 109.47683 * 158.11025 * 6 5 4 35 35 H 0.97001 * 120.00273 * 179.97438 * 10 9 7 36 36 H 1.08000 * 120.75409 * 359.74615 * 18 17 15 37 37 H 1.07991 * 120.31025 * 180.02562 * 19 18 17 38 38 H 1.08996 * 109.50355 * 297.53805 * 22 21 20 39 39 H 1.08998 * 109.50264 * 57.66802 * 22 21 20 40 40 H 1.08994 * 109.50924 * 296.91673 * 23 22 21 41 41 H 1.09005 * 109.54076 * 176.80234 * 23 22 21 42 42 H 1.08999 * 109.50769 * 298.73357 * 25 24 23 43 43 H 1.09000 * 109.53945 * 178.63090 * 25 24 23 44 44 H 1.09005 * 109.50717 * 302.32618 * 26 21 20 45 45 H 1.09002 * 109.51036 * 62.41283 * 26 21 20 46 46 H 1.08005 * 119.74166 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.1043 -0.9271 5 7 4.5835 -1.1032 -0.9276 6 6 5.3152 -0.2715 -1.8863 7 6 5.3929 -0.9835 -3.2122 8 1 4.9426 -1.9582 -3.3290 9 6 6.0388 -0.3905 -4.2763 10 7 6.5875 0.7961 -4.1340 11 14 6.1357 -1.2734 -5.9197 12 1 4.9600 -0.9057 -6.7492 13 1 7.3815 -0.8753 -6.6228 14 1 6.1422 -2.7411 -5.6935 15 6 5.2582 -1.8674 -0.0459 16 8 4.6560 -2.6397 0.6748 17 6 6.7274 -1.7668 0.0447 18 6 7.3844 -2.0175 1.2594 19 6 8.7484 -1.9120 1.2977 20 6 9.4401 -1.5622 0.1391 21 7 10.8200 -1.4540 0.1742 22 6 11.2472 -0.4944 1.2029 23 6 12.7768 -0.4504 1.2482 24 8 13.2776 -0.1131 -0.0483 25 6 12.8812 -1.0273 -1.0743 26 6 11.3526 -1.0771 -1.1431 27 7 8.7948 -1.3305 -0.9959 28 6 7.4836 -1.4201 -1.0758 29 1 2.9714 -0.1776 1.0121 30 1 2.9709 0.9665 -0.3515 31 1 2.7551 -0.9260 -1.9392 32 1 2.7557 -2.0700 -0.5756 33 1 4.7959 0.6783 -2.0138 34 1 6.3227 -0.0875 -1.5131 35 1 7.0422 1.2131 -4.8825 36 1 6.8260 -2.2831 2.1448 37 1 9.2839 -2.0989 2.2167 38 1 10.8616 0.4957 0.9595 39 1 10.8631 -0.8067 2.1739 40 1 13.1605 -1.4268 1.5438 41 1 13.0988 0.3008 1.9694 42 1 13.2679 -2.0205 -0.8461 43 1 13.2781 -0.6936 -2.0331 44 1 11.0456 -1.8148 -1.8845 45 1 10.9681 -0.0967 -1.4243 46 1 6.9895 -1.2252 -2.0162 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742360708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:09 Heat of formation + Delta-G solvation = 8.315113 kcal Electronic energy + Delta-G solvation = -30190.125195 eV Core-core repulsion = 26080.836031 eV Total energy + Delta-G solvation = -4109.289164 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.08425 -40.91397 -39.61870 -37.94240 -37.08315 -36.65537 -34.82484 -33.60925 -33.05419 -32.13828 -31.17303 -29.29493 -28.26042 -25.74321 -25.53615 -25.05133 -23.75792 -23.50969 -21.55369 -20.56388 -18.93610 -18.76239 -18.43233 -18.37613 -17.71849 -17.09101 -16.67425 -16.47678 -16.41328 -16.06548 -16.03975 -15.84100 -15.81942 -15.38989 -15.25133 -14.98225 -14.47542 -14.30909 -14.17534 -14.10776 -13.79787 -13.58925 -13.43675 -13.28943 -13.04008 -12.81145 -12.73577 -12.54796 -12.39442 -12.28661 -12.08001 -11.81206 -11.72391 -11.63203 -11.28173 -10.88623 -10.87116 -10.63628 -10.38566 -10.26624 -9.57650 -9.15096 -8.22707 -6.37106 -0.20618 0.38781 1.42599 1.47550 1.53956 1.60656 1.77842 1.85016 2.20354 2.37045 2.45028 2.87721 2.92397 3.08394 3.14782 3.48149 3.73424 3.86146 3.92527 4.06735 4.09349 4.12436 4.15113 4.15811 4.20107 4.26716 4.32474 4.53720 4.54887 4.72320 4.77616 4.80776 4.82346 4.88931 4.94541 4.98059 5.02891 5.06069 5.22505 5.26963 5.49534 5.58543 5.65400 5.76942 5.99771 6.06006 6.14318 6.49126 6.54207 6.78241 7.02817 7.23247 7.36732 8.80552 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009769 B = 0.003604 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.465000 B = 7767.781337 C = 9890.511264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.246 3.754 3 C -0.031 4.031 4 C 0.122 3.878 5 N -0.587 5.587 6 C 0.223 3.777 7 C -0.554 4.554 8 H 0.058 0.942 9 C 0.040 3.960 10 N -0.899 5.899 11 Si 0.943 3.057 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.273 1.273 15 C 0.568 3.432 16 O -0.581 6.581 17 C -0.236 4.236 18 C -0.001 4.001 19 C -0.193 4.193 20 C 0.312 3.688 21 N -0.474 5.474 22 C 0.019 3.981 23 C 0.064 3.936 24 O -0.402 6.402 25 C 0.068 3.932 26 C 0.031 3.969 27 N -0.547 5.547 28 C 0.136 3.864 29 H 0.123 0.877 30 H 0.130 0.870 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.035 0.965 34 H 0.056 0.944 35 H 0.270 0.730 36 H 0.160 0.840 37 H 0.173 0.827 38 H 0.041 0.959 39 H 0.121 0.879 40 H 0.075 0.925 41 H 0.128 0.872 42 H 0.072 0.928 43 H 0.114 0.886 44 H 0.082 0.918 45 H 0.038 0.962 46 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.847 -0.914 11.207 16.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.071 4.071 3 C -0.072 4.072 4 C -0.002 4.002 5 N -0.316 5.316 6 C 0.102 3.898 7 C -0.593 4.593 8 H 0.076 0.924 9 C -0.164 4.164 10 N -0.536 5.536 11 Si 0.769 3.231 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.198 1.198 15 C 0.358 3.642 16 O -0.464 6.464 17 C -0.242 4.242 18 C -0.027 4.027 19 C -0.215 4.215 20 C 0.080 3.920 21 N -0.191 5.191 22 C -0.107 4.107 23 C -0.013 4.013 24 O -0.321 6.321 25 C -0.009 4.009 26 C -0.096 4.096 27 N -0.262 5.262 28 C -0.020 4.020 29 H 0.141 0.859 30 H 0.148 0.852 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.178 0.822 37 H 0.191 0.809 38 H 0.059 0.941 39 H 0.139 0.861 40 H 0.094 0.906 41 H 0.146 0.854 42 H 0.090 0.910 43 H 0.132 0.868 44 H 0.101 0.899 45 H 0.056 0.944 46 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 10.799 -1.190 10.822 15.335 hybrid contribution -0.747 -0.092 -0.964 1.223 sum 10.053 -1.282 9.857 14.138 Atomic orbital electron populations 1.81207 1.14272 1.10534 1.10661 1.29173 0.95035 0.91493 0.91446 1.19694 0.80171 1.03168 1.04122 1.21222 0.79623 0.98833 1.00552 1.47946 1.06416 1.43693 1.33546 1.19999 0.93532 0.90229 0.86021 1.21567 1.36957 1.04578 0.96151 0.92397 1.25476 0.94393 0.95177 1.01367 1.69966 1.35197 1.15363 1.33067 0.85774 0.77697 0.79119 0.80497 1.19944 1.20876 1.19823 1.18128 0.86968 0.79615 0.79488 1.90684 1.70472 1.39110 1.46103 1.20864 0.94404 1.11667 0.97234 1.21405 0.94188 0.90443 0.96691 1.21407 0.93979 1.06666 0.99479 1.20506 0.89891 0.91428 0.90211 1.59299 1.04673 1.46425 1.08746 1.23158 0.98724 0.93003 0.95781 1.22906 0.89952 1.03347 0.85077 1.87983 1.73993 1.52103 1.17996 1.22796 0.91072 0.94420 0.92570 1.22621 0.96526 1.00745 0.89728 1.67906 1.10971 1.19433 1.27876 1.25054 0.88411 0.87208 1.01328 0.85883 0.85235 0.89229 0.90071 0.94722 0.92701 0.92108 0.82242 0.80916 0.94066 0.86082 0.90635 0.85416 0.90968 0.86805 0.89914 0.94357 0.77815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.70 18.54 20.01 0.37 -15.33 16 2 C 0.25 6.61 15.43 89.44 1.38 7.99 16 3 C -0.03 -0.71 6.03 28.79 0.17 -0.54 16 4 C 0.12 3.69 5.42 86.38 0.47 4.16 16 5 N -0.59 -21.23 2.46 -829.90 -2.05 -23.27 16 6 C 0.22 9.25 4.65 85.63 0.40 9.65 16 7 C -0.55 -25.90 7.47 25.60 0.19 -25.71 16 8 H 0.06 2.78 7.81 -2.91 -0.02 2.76 16 9 C 0.04 1.91 5.33 84.66 0.45 2.36 16 10 N -0.90 -45.45 13.29 21.45 0.28 -45.16 16 11 Si 0.94 39.66 29.54 68.60 2.03 41.69 16 12 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 13 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 14 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 15 C 0.57 21.32 7.47 86.70 0.65 21.97 16 16 O -0.58 -23.14 16.30 -4.02 -0.07 -23.21 16 17 C -0.24 -8.48 5.59 -19.99 -0.11 -8.59 16 18 C 0.00 -0.03 9.67 22.46 0.22 0.19 16 19 C -0.19 -4.87 9.14 22.22 0.20 -4.67 16 20 C 0.31 9.51 6.39 133.25 0.85 10.36 16 21 N -0.47 -11.94 4.74 -701.01 -3.32 -15.26 16 22 C 0.02 0.35 5.39 86.31 0.47 0.81 16 23 C 0.06 0.96 7.01 72.01 0.50 1.47 16 24 O -0.40 -8.55 10.83 -148.98 -1.61 -10.16 16 25 C 0.07 1.38 7.01 72.01 0.50 1.89 16 26 C 0.03 0.84 4.81 86.31 0.42 1.25 16 27 N -0.55 -20.80 8.66 -192.34 -1.67 -22.47 16 28 C 0.14 5.46 8.66 85.03 0.74 6.19 16 29 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.13 2.68 8.14 -2.38 -0.02 2.66 16 31 H 0.09 2.75 8.08 -2.39 -0.02 2.73 16 32 H 0.08 2.53 7.32 -2.39 -0.02 2.52 16 33 H 0.03 1.47 8.13 -2.39 -0.02 1.45 16 34 H 0.06 2.45 4.09 -2.39 -0.01 2.44 16 35 H 0.27 13.16 8.31 -92.71 -0.77 12.39 16 36 H 0.16 3.84 7.98 -2.91 -0.02 3.82 16 37 H 0.17 2.91 7.16 -2.92 -0.02 2.89 16 38 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.12 1.58 6.80 -2.39 -0.02 1.56 16 40 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.13 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.08 2.45 7.85 -2.38 -0.02 2.43 16 45 H 0.04 1.22 8.02 -2.39 -0.02 1.20 16 46 H 0.21 9.34 3.03 -2.91 -0.01 9.33 16 Total: -1.00 -62.42 382.72 2.49 -59.93 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 1.02 Total: 24.47 kcal Atomic # 6 Polarization: 21.28 SS G_CDS: 7.50 Total: 28.78 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -6.38 Total: -121.50 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -1.68 Total: -33.37 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.69 kcal Total: -62.42 2.49 -59.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742360708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.243 kcal (2) G-P(sol) polarization free energy of solvation -62.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds