Wall clock time and date at job start Wed Apr 1 2020 02:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00056 * 2 1 4 4 H 1.48499 * 109.46972 * 274.99038 * 3 2 1 5 5 H 1.48499 * 109.47377 * 34.98814 * 3 2 1 6 6 H 1.48498 * 109.47267 * 154.98981 * 3 2 1 7 7 C 1.38812 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99932 * 185.90461 * 7 2 1 9 9 N 1.36937 * 120.00108 * 5.90959 * 7 2 1 10 10 C 1.46778 * 125.34026 * 174.59347 * 9 7 2 11 11 C 1.53963 * 106.62767 * 161.48418 * 10 9 7 12 12 H 1.09000 * 113.01504 * 265.72323 * 11 10 9 13 13 C 1.54105 * 109.45777 * 138.18022 * 11 10 9 14 14 N 1.46741 * 106.63033 * 278.65644 * 13 11 10 15 15 C 1.34771 * 125.33240 * 161.56676 * 14 13 11 16 16 O 1.21589 * 120.00038 * 185.63386 * 15 14 13 17 17 C 1.47580 * 119.99771 * 5.62568 * 15 14 13 18 18 C 1.39758 * 120.07400 * 203.17677 * 17 15 14 19 19 C 1.37662 * 119.92500 * 180.02562 * 18 17 15 20 20 C 1.39131 * 120.07595 * 359.97438 * 19 18 17 21 21 N 1.39433 * 119.92847 * 179.74474 * 20 19 18 22 22 C 1.34777 * 119.99929 * 143.73113 * 21 20 19 23 23 N 1.34778 * 119.99724 * 184.13996 * 22 21 20 24 24 O 1.21583 * 120.00105 * 4.13611 * 22 21 20 25 25 C 1.39141 * 120.14551 * 0.02562 * 20 19 18 26 26 C 1.37653 * 120.07547 * 359.97438 * 25 20 19 27 27 C 1.46646 * 109.33893 * 341.30050 * 14 13 11 28 28 C 1.53690 * 108.01122 * 1.07643 * 27 14 13 29 29 H 1.08996 * 112.56376 * 254.09404 * 28 27 14 30 30 C 1.46672 * 125.33892 * 354.59835 * 9 7 2 31 31 H 0.97005 * 120.00332 * 0.02562 * 1 2 3 32 32 H 1.09008 * 110.02182 * 42.19563 * 10 9 7 33 33 H 1.09000 * 110.03043 * 280.78059 * 10 9 7 34 34 H 1.09004 * 110.15159 * 159.31563 * 13 11 10 35 35 H 1.08998 * 109.95433 * 37.89216 * 13 11 10 36 36 H 1.07999 * 120.04059 * 0.04674 * 18 17 15 37 37 H 1.08000 * 119.95987 * 179.97438 * 19 18 17 38 38 H 0.96999 * 120.00147 * 323.73759 * 21 20 19 39 39 H 0.96997 * 119.99894 * 359.97438 * 23 22 21 40 40 H 0.97001 * 119.99800 * 180.02562 * 23 22 21 41 41 H 1.08008 * 119.95718 * 179.97438 * 25 20 19 42 42 H 1.07997 * 120.03701 * 180.02562 * 26 25 20 43 43 H 1.08999 * 109.75971 * 120.72195 * 27 14 13 44 44 H 1.09004 * 109.75705 * 241.43670 * 27 14 13 45 45 H 1.09008 * 109.77028 * 60.92434 * 30 9 7 46 46 H 1.08994 * 109.77035 * 300.17169 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1072 -1.3948 5 1 1.5044 2.6199 0.8028 6 1 3.5964 1.4120 0.5919 7 6 2.0102 -1.2022 0.0005 8 1 3.0859 -1.2046 0.0968 9 7 1.3309 -2.3850 -0.1210 10 6 1.9494 -3.7101 -0.2470 11 6 0.8630 -4.7395 0.1143 12 1 0.8920 -5.0400 1.1617 13 6 0.9329 -5.9256 -0.8671 14 7 0.2197 -5.5094 -2.0802 15 6 0.3381 -6.0887 -3.2913 16 8 -0.2207 -5.6020 -4.2553 17 6 1.1461 -7.3137 -3.4475 18 6 1.6759 -7.6488 -4.6966 19 6 2.4288 -8.7925 -4.8389 20 6 2.6629 -9.6142 -3.7409 21 7 3.4214 -10.7747 -3.8897 22 6 4.2496 -11.1696 -2.9024 23 7 5.0443 -12.2438 -3.0788 24 8 4.2798 -10.5568 -1.8527 25 6 2.1370 -9.2836 -2.4959 26 6 1.3833 -8.1414 -2.3467 27 6 -0.6468 -4.3686 -1.7669 28 6 -0.4575 -4.0218 -0.2817 29 1 -1.3046 -4.3301 0.3310 30 6 -0.1288 -2.5263 -0.1459 31 1 -0.4851 0.8401 -0.0004 32 1 2.7897 -3.7968 0.4420 33 1 2.2878 -3.8684 -1.2710 34 1 0.4506 -6.8013 -0.4328 35 1 1.9725 -6.1512 -1.1045 36 1 1.4952 -7.0110 -5.5492 37 1 2.8381 -9.0521 -5.8040 38 1 3.3532 -11.2977 -4.7037 39 1 5.0199 -12.7328 -3.9162 40 1 5.6401 -12.5282 -2.3682 41 1 2.3203 -9.9239 -1.6456 42 1 0.9757 -7.8851 -1.3799 43 1 -0.3681 -3.5140 -2.3834 44 1 -1.6874 -4.6341 -1.9537 45 1 -0.5377 -1.9802 -0.9961 46 1 -0.5526 -2.1382 0.7802 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049200099.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:33 Heat of formation + Delta-G solvation = 14.278096 kcal Electronic energy + Delta-G solvation = -29920.375479 eV Core-core repulsion = 25811.344890 eV Total energy + Delta-G solvation = -4109.030589 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.06535 -40.34034 -38.81721 -37.72482 -35.16449 -34.92705 -34.09873 -32.28992 -31.26474 -30.44056 -29.70312 -29.30732 -25.72759 -25.57288 -24.08063 -23.16529 -22.50232 -21.32948 -20.14311 -19.75737 -19.35388 -18.83362 -18.45770 -17.40954 -16.61983 -16.50710 -16.08728 -15.82871 -15.52311 -14.99046 -14.73577 -14.65887 -14.35180 -14.04049 -13.73269 -13.42593 -13.39177 -13.11417 -13.03802 -12.65370 -12.43426 -11.98970 -11.82447 -11.69134 -11.50405 -11.16517 -10.86620 -10.82357 -10.77986 -10.49541 -10.29551 -10.22042 -10.08114 -9.96458 -9.85754 -9.68265 -9.62166 -9.12868 -8.57153 -8.47579 -8.24031 -6.79327 -5.70364 -3.02617 0.72939 1.25317 2.28677 2.58402 2.98045 3.22097 3.43076 3.48384 3.49993 3.77161 3.90124 4.50737 4.56683 4.62623 4.80094 4.82521 5.07372 5.12200 5.20898 5.23784 5.34202 5.47182 5.55531 5.66210 5.75230 5.79877 5.84224 5.87677 5.95964 5.99656 6.14906 6.21308 6.25269 6.30982 6.32865 6.37306 6.38676 6.59564 6.66707 6.73556 6.77593 6.89444 7.32683 7.55059 7.61978 7.75864 7.83600 8.04779 8.29389 8.35746 9.25112 9.85617 10.50032 11.41765 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016811 B = 0.002449 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.134407 B =11429.505613 C =11997.704548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.144 3.856 11 C -0.111 4.111 12 H 0.100 0.900 13 C 0.106 3.894 14 N -0.602 5.602 15 C 0.570 3.430 16 O -0.542 6.542 17 C -0.139 4.139 18 C -0.042 4.042 19 C -0.155 4.155 20 C 0.178 3.822 21 N -0.684 5.684 22 C 0.704 3.296 23 N -0.862 5.862 24 O -0.570 6.570 25 C -0.126 4.126 26 C -0.081 4.081 27 C 0.119 3.881 28 C -0.123 4.123 29 H 0.089 0.911 30 C 0.186 3.814 31 H 0.252 0.748 32 H 0.035 0.965 33 H 0.018 0.982 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.138 0.862 37 H 0.130 0.870 38 H 0.408 0.592 39 H 0.398 0.602 40 H 0.419 0.581 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.077 0.923 44 H 0.061 0.939 45 H 0.052 0.948 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.134 -27.614 -7.385 29.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.018 3.982 11 C -0.131 4.131 12 H 0.118 0.882 13 C -0.018 4.018 14 N -0.334 5.334 15 C 0.360 3.640 16 O -0.421 6.421 17 C -0.143 4.143 18 C -0.062 4.062 19 C -0.175 4.175 20 C 0.083 3.917 21 N -0.333 5.333 22 C 0.403 3.597 23 N -0.430 5.430 24 O -0.446 6.446 25 C -0.147 4.147 26 C -0.100 4.100 27 C -0.003 4.003 28 C -0.143 4.143 29 H 0.107 0.893 30 C 0.062 3.938 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.036 0.964 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.156 0.844 37 H 0.148 0.852 38 H 0.243 0.757 39 H 0.226 0.774 40 H 0.252 0.748 41 H 0.161 0.839 42 H 0.164 0.836 43 H 0.096 0.904 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.759 -26.560 -7.109 27.904 hybrid contribution 0.774 0.183 -0.556 0.971 sum 5.534 -26.377 -7.666 28.020 Atomic orbital electron populations 1.69958 1.04876 1.25076 1.56928 1.24809 0.95731 0.97682 1.02131 0.86106 0.78642 0.83569 0.77503 1.21631 1.21771 1.20656 1.19050 0.90954 0.82451 1.43191 0.90423 1.44217 1.01433 1.00884 1.86322 1.21245 0.93786 0.85611 0.97569 1.23014 0.97197 0.94342 0.98533 0.88184 1.22331 0.97017 0.97066 0.85339 1.48118 1.43860 1.32956 1.08505 1.17849 0.81090 0.83476 0.81575 1.90776 1.48701 1.64800 1.37829 1.19927 1.02703 0.96804 0.94833 1.21003 0.93495 0.95146 0.96556 1.20785 1.03342 0.95069 0.98347 1.17645 0.92582 0.86551 0.94950 1.42444 1.43721 1.26500 1.20605 1.15957 0.78994 0.81078 0.83713 1.42967 1.45936 1.32130 1.22002 1.91029 1.70902 1.56489 1.26144 1.21199 0.97513 0.98690 0.97264 1.21908 0.95742 0.93303 0.99020 1.22003 0.93228 0.88468 0.96593 1.23145 0.97044 1.00372 0.93689 0.89274 1.21048 0.84677 0.86707 1.01415 0.93717 0.94680 0.96384 0.91395 0.90305 0.84423 0.85184 0.75656 0.77371 0.74813 0.83882 0.83642 0.90432 0.92082 0.92950 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.16 10.29 55.49 0.57 -26.59 16 2 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16 3 Si 0.91 22.47 29.56 -169.99 -5.02 17.44 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.23 -6.44 10.24 -15.06 -0.15 -6.59 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.60 -15.43 3.38 -171.84 -0.58 -16.01 16 10 C 0.14 3.00 6.49 -3.39 -0.02 2.98 16 11 C -0.11 -1.83 4.16 -88.26 -0.37 -2.20 16 12 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 13 C 0.11 1.49 4.21 -3.33 -0.01 1.47 16 14 N -0.60 -10.04 3.30 -173.48 -0.57 -10.61 16 15 C 0.57 9.84 7.64 -12.45 -0.10 9.74 16 16 O -0.54 -11.10 16.89 5.29 0.09 -11.01 16 17 C -0.14 -1.94 5.70 -104.95 -0.60 -2.53 16 18 C -0.04 -0.52 9.58 -39.22 -0.38 -0.89 16 19 C -0.15 -1.46 9.95 -39.46 -0.39 -1.85 16 20 C 0.18 1.75 6.27 -83.74 -0.52 1.23 16 21 N -0.68 -4.59 5.32 -14.22 -0.08 -4.66 16 22 C 0.70 5.83 8.66 -86.92 -0.75 5.08 16 23 N -0.86 -3.04 8.88 27.63 0.25 -2.80 16 24 O -0.57 -7.44 14.69 5.29 0.08 -7.36 16 25 C -0.13 -1.45 8.66 -39.46 -0.34 -1.79 16 26 C -0.08 -0.98 8.17 -39.23 -0.32 -1.30 16 27 C 0.12 2.16 6.22 -3.60 -0.02 2.14 16 28 C -0.12 -2.22 4.01 -88.60 -0.36 -2.57 16 29 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 30 C 0.19 4.45 4.78 -3.57 -0.02 4.44 16 31 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.02 0.40 7.72 -51.93 -0.40 0.00 16 34 H 0.07 0.77 6.38 -51.93 -0.33 0.44 16 35 H 0.08 1.09 6.92 -51.93 -0.36 0.73 16 36 H 0.14 1.66 7.82 -52.49 -0.41 1.25 16 37 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 38 H 0.41 1.16 8.84 -40.82 -0.36 0.80 16 39 H 0.40 0.05 8.85 -40.82 -0.36 -0.31 16 40 H 0.42 1.21 8.93 -40.82 -0.36 0.85 16 41 H 0.14 1.69 6.32 -52.48 -0.33 1.36 16 42 H 0.15 1.60 4.26 -52.49 -0.22 1.37 16 43 H 0.08 1.67 7.29 -51.93 -0.38 1.29 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.05 1.41 6.60 -51.92 -0.34 1.06 16 46 H 0.05 1.19 7.52 -51.93 -0.39 0.80 16 LS Contribution 368.06 15.07 5.55 5.55 Total: -1.00 -37.23 368.06 -10.09 -47.32 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -5.92 Total: 1.68 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: -4.45 Total: 7.04 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: -0.41 Total: -60.66 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: 0.17 Total: -18.37 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.23 -10.09 -47.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049200099.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.599 kcal (2) G-P(sol) polarization free energy of solvation -37.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds