Wall clock time and date at job start Wed Apr 1 2020 03:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00108 * 2 1 4 4 H 1.48500 * 109.46812 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46993 * 119.99779 * 3 2 1 6 6 H 1.48504 * 109.47020 * 240.00065 * 3 2 1 7 7 C 1.38810 * 119.99536 * 180.27255 * 2 1 3 8 8 H 1.08003 * 119.99730 * 179.72328 * 7 2 1 9 9 N 1.36934 * 120.00528 * 359.72714 * 7 2 1 10 10 C 1.46502 * 120.00361 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47217 * 179.97438 * 10 9 7 12 12 H 1.09008 * 109.46670 * 60.00073 * 11 10 9 13 13 C 1.54803 * 109.46705 * 179.97438 * 11 10 9 14 14 N 1.45125 * 109.53382 * 187.89447 * 13 11 10 15 15 C 1.34776 * 118.76366 * 90.71390 * 14 13 11 16 16 O 1.21546 * 120.00453 * 173.73755 * 15 14 13 17 17 C 1.47954 * 119.99425 * 353.73047 * 15 14 13 18 18 C 1.39794 * 119.31525 * 172.91898 * 17 15 14 19 19 C 1.37012 * 119.45401 * 179.74523 * 18 17 15 20 20 C 1.39774 * 118.23792 * 0.49827 * 19 18 17 21 21 C 1.46156 * 134.24758 * 179.73971 * 20 19 18 22 22 C 1.34437 * 106.91653 * 180.02562 * 21 20 19 23 23 N 1.36719 * 110.00510 * 359.97438 * 22 21 20 24 24 H 0.97006 * 124.99645 * 180.02562 * 23 22 21 25 25 C 1.37553 * 110.00369 * 0.02562 * 23 22 21 26 26 N 1.32168 * 133.20038 * 179.97438 * 25 23 22 27 27 C 1.47511 * 122.48567 * 270.70821 * 14 13 11 28 28 C 1.53576 * 111.02216 * 41.62414 * 27 14 13 29 29 C 1.51531 * 109.58180 * 39.98571 * 28 27 14 30 30 O 1.38017 * 109.47116 * 300.00599 * 11 10 9 31 31 H 0.96998 * 120.00172 * 179.97438 * 1 2 3 32 32 H 0.97006 * 119.99858 * 0.02562 * 9 7 2 33 33 H 1.08993 * 109.47126 * 300.00173 * 10 9 7 34 34 H 1.09003 * 109.46555 * 60.00161 * 10 9 7 35 35 H 1.09000 * 109.46166 * 307.90362 * 13 11 10 36 36 H 1.08994 * 109.46369 * 67.87589 * 13 11 10 37 37 H 1.08000 * 120.27324 * 359.97438 * 18 17 15 38 38 H 1.07999 * 120.88326 * 180.23775 * 19 18 17 39 39 H 1.07995 * 126.53960 * 0.05716 * 21 20 19 40 40 H 1.07997 * 124.99141 * 179.97438 * 22 21 20 41 41 H 1.09003 * 109.16593 * 281.23440 * 27 14 13 42 42 H 1.08994 * 109.12823 * 161.99692 * 27 14 13 43 43 H 1.08994 * 109.45896 * 279.94493 * 28 27 14 44 44 H 1.09005 * 109.43100 * 160.00011 * 28 27 14 45 45 H 1.09001 * 109.59120 * 148.81117 * 29 28 27 46 46 H 1.09006 * 109.58899 * 28.37955 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0101 -1.2022 -0.0057 8 1 3.0901 -1.2022 -0.0102 9 7 1.3255 -2.3881 -0.0057 10 6 2.0579 -3.6568 -0.0123 11 6 1.0637 -4.8197 -0.0102 12 1 0.4327 -4.7598 -0.8971 13 6 1.8377 -6.1603 -0.0178 14 7 0.9062 -7.2575 -0.2037 15 6 0.6354 -7.6731 -1.4569 16 8 -0.0505 -8.6605 -1.6349 17 6 1.1732 -6.9271 -2.6160 18 6 1.0108 -7.4507 -3.9019 19 6 1.5031 -6.7597 -4.9778 20 6 2.1640 -5.5510 -4.7413 21 6 2.8115 -4.5584 -5.5966 22 6 3.2793 -3.5912 -4.7885 23 7 2.9827 -3.8854 -3.4867 24 1 3.2188 -3.3343 -2.7241 25 6 2.3004 -5.0777 -3.4174 26 7 1.8035 -5.7788 -2.4131 27 6 0.2444 -7.9351 0.9271 28 6 -0.2140 -6.9209 1.9853 29 6 -0.7741 -5.6906 1.3005 30 8 0.2756 -4.7492 1.1207 31 1 -0.4850 -0.8400 -0.0004 32 1 0.3554 -2.3881 -0.0021 33 1 2.6805 -3.7123 -0.9052 34 1 2.6885 -3.7168 0.8747 35 1 2.5618 -6.1569 -0.8326 36 1 2.3595 -6.2838 0.9311 37 1 0.4984 -8.3903 -4.0466 38 1 1.3872 -7.1409 -5.9816 39 1 2.8971 -4.5946 -6.6725 40 1 3.8112 -2.7114 -5.1191 41 1 0.9435 -8.6364 1.3828 42 1 -0.6222 -8.4831 0.5574 43 1 0.6348 -6.6358 2.6067 44 1 -0.9856 -7.3718 2.6094 45 1 -1.5562 -5.2517 1.9200 46 1 -1.1861 -5.9681 0.3302 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200746821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:01 Heat of formation + Delta-G solvation = 42.997688 kcal Electronic energy + Delta-G solvation = -31686.063922 eV Core-core repulsion = 27578.278708 eV Total energy + Delta-G solvation = -4107.785214 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.74994 -40.46486 -38.67646 -37.50686 -35.43739 -34.97399 -33.52934 -32.68483 -31.02631 -30.18446 -29.46204 -28.52043 -26.62769 -25.17867 -24.19642 -23.12177 -22.63641 -21.42361 -21.05395 -20.79830 -19.53725 -18.57592 -17.48231 -17.28770 -16.71824 -16.49258 -16.30349 -15.80260 -15.31762 -15.16629 -14.78115 -14.62521 -14.21675 -14.01411 -13.72662 -13.66261 -13.46017 -13.33750 -13.20579 -13.08076 -12.49726 -12.48283 -12.22876 -12.12950 -11.98670 -11.60329 -11.28411 -10.86785 -10.75429 -10.63155 -10.57129 -10.36191 -10.09173 -10.00474 -9.40979 -9.22958 -9.08357 -8.89168 -8.63853 -8.40302 -8.15104 -6.97569 -6.09502 -3.08286 0.53086 1.21067 2.46642 2.65108 2.83621 2.92781 3.47311 3.52240 3.69812 3.83873 4.01219 4.15388 4.48558 4.64425 4.66314 4.72947 4.81794 4.91075 5.03257 5.11435 5.21542 5.28660 5.33578 5.44500 5.48543 5.58166 5.60540 5.61337 5.67814 5.69859 5.74294 5.89602 6.04243 6.04882 6.11155 6.14451 6.17085 6.32489 6.36857 6.48385 6.52962 6.73520 6.87558 7.13837 7.30401 7.75822 7.76230 8.03562 8.08826 8.77238 9.25392 10.12262 10.29358 11.39072 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.008924 B = 0.004977 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3136.878056 B = 5624.184282 C = 8276.858755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.043 4.043 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.297 1.297 7 C -0.333 4.333 8 H 0.062 0.938 9 N -0.735 5.735 10 C 0.183 3.817 11 C 0.099 3.901 12 H 0.052 0.948 13 C 0.075 3.925 14 N -0.590 5.590 15 C 0.570 3.430 16 O -0.538 6.538 17 C 0.104 3.896 18 C -0.143 4.143 19 C -0.040 4.040 20 C -0.129 4.129 21 C -0.212 4.212 22 C 0.086 3.914 23 N -0.569 5.569 24 H 0.429 0.571 25 C 0.280 3.720 26 N -0.447 5.447 27 C 0.110 3.890 28 C -0.165 4.165 29 C 0.075 3.925 30 O -0.376 6.376 31 H 0.257 0.743 32 H 0.370 0.630 33 H 0.023 0.977 34 H 0.023 0.977 35 H 0.119 0.881 36 H 0.071 0.929 37 H 0.146 0.854 38 H 0.139 0.861 39 H 0.152 0.848 40 H 0.181 0.819 41 H 0.066 0.934 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.214 -15.601 -7.324 18.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.242 4.242 3 Si 0.910 3.090 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.224 1.224 7 C -0.464 4.464 8 H 0.080 0.920 9 N -0.381 5.381 10 C 0.054 3.946 11 C 0.039 3.961 12 H 0.070 0.930 13 C -0.049 4.049 14 N -0.321 5.321 15 C 0.357 3.643 16 O -0.415 6.415 17 C -0.043 4.043 18 C -0.165 4.165 19 C -0.066 4.066 20 C -0.137 4.137 21 C -0.238 4.238 22 C -0.043 4.043 23 N -0.176 5.176 24 H 0.271 0.729 25 C 0.044 3.956 26 N -0.163 5.163 27 C -0.012 4.012 28 C -0.203 4.203 29 C -0.002 4.002 30 O -0.294 6.294 31 H 0.068 0.932 32 H 0.204 0.796 33 H 0.041 0.959 34 H 0.040 0.960 35 H 0.137 0.863 36 H 0.090 0.910 37 H 0.164 0.836 38 H 0.157 0.843 39 H 0.169 0.831 40 H 0.198 0.802 41 H 0.085 0.915 42 H 0.108 0.892 43 H 0.099 0.901 44 H 0.103 0.897 45 H 0.106 0.894 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.129 -13.882 -6.290 16.080 hybrid contribution -0.043 -1.825 -0.539 1.904 sum 5.086 -15.707 -6.829 17.867 Atomic orbital electron populations 1.70841 1.06072 1.28632 1.53103 1.25725 0.97057 1.00850 1.00528 0.83265 0.74211 0.75819 0.75727 1.21055 1.22307 1.22428 1.19974 0.91749 0.85871 1.48821 0.92017 1.42242 1.05083 1.00365 1.90374 1.20401 0.92277 0.84380 0.97508 1.22134 0.92423 0.93920 0.87575 0.92992 1.23000 0.92745 0.85707 1.03467 1.47808 1.44136 1.34676 1.05500 1.18009 0.80189 0.83491 0.82576 1.90753 1.39640 1.25787 1.85328 1.20657 0.98535 0.91531 0.93550 1.21410 1.01835 1.01908 0.91370 1.20618 0.94518 0.92117 0.99379 1.20113 1.02550 0.96908 0.94111 1.21615 1.07576 0.95514 0.99046 1.22080 1.00260 1.00076 0.81897 1.41927 1.48097 1.18257 1.09274 0.72946 1.18423 0.97788 0.89187 0.90162 1.67056 1.10250 1.06243 1.32799 1.21877 0.98133 0.94570 0.86574 1.22491 1.02574 0.96871 0.98349 1.22098 0.89757 0.88957 0.99417 1.86389 1.45030 1.54497 1.43467 0.93203 0.79650 0.95930 0.95963 0.86339 0.91033 0.83636 0.84297 0.83067 0.80218 0.91536 0.89197 0.90099 0.89668 0.89391 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.29 13.70 55.49 0.76 -28.53 16 2 C -0.04 -1.25 5.50 -17.43 -0.10 -1.35 16 3 Si 1.08 25.50 29.92 -169.99 -5.09 20.41 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.30 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.30 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.33 -9.20 9.99 -15.06 -0.15 -9.35 16 8 H 0.06 1.64 7.83 -52.48 -0.41 1.23 16 9 N -0.74 -18.62 5.49 -59.91 -0.33 -18.95 16 10 C 0.18 3.73 5.94 -4.04 -0.02 3.71 16 11 C 0.10 1.79 1.86 -25.78 -0.05 1.74 16 12 H 0.05 1.04 7.02 -51.92 -0.36 0.68 16 13 C 0.07 1.12 4.40 -3.83 -0.02 1.10 16 14 N -0.59 -8.50 2.19 -173.54 -0.38 -8.88 16 15 C 0.57 8.89 7.59 -12.28 -0.09 8.79 16 16 O -0.54 -9.14 15.66 5.33 0.08 -9.06 16 17 C 0.10 1.55 6.52 -82.99 -0.54 1.01 16 18 C -0.14 -1.83 9.55 -39.44 -0.38 -2.21 16 19 C -0.04 -0.46 10.17 -39.45 -0.40 -0.86 16 20 C -0.13 -1.67 6.39 -105.00 -0.67 -2.34 16 21 C -0.21 -2.25 11.08 -37.75 -0.42 -2.67 16 22 C 0.09 0.91 11.81 -16.72 -0.20 0.71 16 23 N -0.57 -7.63 6.01 -12.10 -0.07 -7.71 16 24 H 0.43 6.04 7.23 -40.82 -0.30 5.74 16 25 C 0.28 4.13 8.36 -155.80 -1.30 2.82 16 26 N -0.45 -6.86 4.06 -8.82 -0.04 -6.90 16 27 C 0.11 1.34 6.12 -3.19 -0.02 1.32 16 28 C -0.16 -1.93 5.78 -27.18 -0.16 -2.09 16 29 C 0.07 1.11 6.37 36.41 0.23 1.34 16 30 O -0.38 -7.01 9.19 -26.54 -0.24 -7.25 16 31 H 0.26 8.01 6.77 -40.82 -0.28 7.74 16 32 H 0.37 10.07 6.36 -40.82 -0.26 9.81 16 33 H 0.02 0.44 6.09 -51.93 -0.32 0.12 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.12 1.79 5.19 -52.61 -0.27 1.51 16 36 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 37 H 0.15 1.69 7.62 -52.49 -0.40 1.29 16 38 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 39 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.18 1.27 8.06 -52.49 -0.42 0.84 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.09 1.13 7.07 -51.93 -0.37 0.76 16 43 H 0.08 0.99 8.01 -51.93 -0.42 0.58 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.05 0.71 7.40 -51.93 -0.38 0.33 16 LS Contribution 366.44 15.07 5.52 5.52 Total: -1.00 -34.45 366.44 -10.00 -44.45 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -5.94 Total: 15.21 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -4.28 Total: 1.68 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -0.06 Total: -70.97 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.16 Total: -16.31 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.09 Total: 20.41 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.45 -10.00 -44.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200746821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.448 kcal (2) G-P(sol) polarization free energy of solvation -34.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds