Wall clock time and date at job start Wed Apr 1 2020 03:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99734 * 2 1 4 4 H 1.48496 * 109.47209 * 239.99718 * 3 2 1 5 5 H 1.48500 * 109.47223 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47038 * 119.99566 * 3 2 1 7 7 C 1.38813 * 120.00494 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00012 * 196.31491 * 7 2 1 9 9 N 1.36939 * 119.99747 * 16.31602 * 7 2 1 10 10 C 1.46930 * 120.62729 * 28.14735 * 9 7 2 11 11 C 1.53196 * 108.77288 * 126.39277 * 10 9 7 12 12 C 1.53041 * 109.31412 * 54.63284 * 11 10 9 13 13 C 1.53048 * 109.53745 * 298.63582 * 12 11 10 14 14 C 1.52993 * 109.49752 * 181.35073 * 13 12 11 15 15 O 1.42899 * 109.47418 * 183.32319 * 14 13 12 16 16 N 1.46503 * 109.49362 * 301.41431 * 13 12 11 17 17 C 1.34774 * 119.99484 * 172.56824 * 16 13 12 18 18 O 1.21657 * 120.00173 * 4.07221 * 17 16 13 19 19 C 1.47046 * 119.99993 * 184.07464 * 17 16 13 20 20 C 1.37603 * 119.93462 * 354.88969 * 19 17 16 21 21 C 1.39933 * 120.02032 * 179.97438 * 20 19 17 22 22 C 1.36217 * 119.91830 * 359.97438 * 21 20 19 23 23 C 1.40920 * 119.79999 * 0.02562 * 22 21 20 24 24 N 1.32566 * 132.18471 * 179.97438 * 23 22 21 25 25 C 1.33241 * 109.13687 * 180.02562 * 24 23 22 26 26 C 1.35447 * 108.57944 * 0.02562 * 25 24 23 27 27 N 1.36250 * 107.17678 * 0.02562 * 26 25 24 28 28 C 1.46920 * 120.62898 * 208.14836 * 9 7 2 29 29 H 0.97001 * 120.00362 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.58942 * 6.60660 * 10 9 7 31 31 H 1.09003 * 109.58715 * 246.17600 * 10 9 7 32 32 H 1.09004 * 109.49296 * 294.68230 * 11 10 9 33 33 H 1.09000 * 109.49780 * 174.58908 * 11 10 9 34 34 H 1.09003 * 109.46067 * 178.61598 * 12 11 10 35 35 H 1.08999 * 109.46076 * 58.65656 * 12 11 10 36 36 H 1.09007 * 109.47109 * 303.32214 * 14 13 12 37 37 H 1.09005 * 109.47506 * 63.31692 * 14 13 12 38 38 H 0.96697 * 114.00361 * 179.97438 * 15 14 13 39 39 H 0.96996 * 120.00250 * 352.56186 * 16 13 12 40 40 H 1.08009 * 119.98877 * 359.95780 * 20 19 17 41 41 H 1.07999 * 120.04189 * 179.97438 * 21 20 19 42 42 H 1.08005 * 120.09711 * 180.02562 * 22 21 20 43 43 H 1.08004 * 125.71150 * 180.26782 * 25 24 23 44 44 H 1.07994 * 126.41271 * 180.02562 * 26 25 24 45 45 H 1.08997 * 109.58876 * 113.82773 * 28 9 7 46 46 H 1.08993 * 109.58994 * 353.39462 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0576 -1.2207 0.2633 9 7 1.3671 -2.3643 -0.3321 10 6 0.2145 -2.3476 -1.2432 11 6 0.4755 -3.3332 -2.3866 12 6 0.7958 -4.7115 -1.8035 13 6 2.0593 -4.6227 -0.9444 14 6 2.3978 -6.0076 -0.3893 15 8 3.5319 -5.9104 0.4746 16 7 3.1738 -4.1380 -1.7626 17 6 4.3534 -3.8372 -1.1842 18 8 4.5167 -4.0379 0.0046 19 6 5.4430 -3.2664 -1.9899 20 6 5.2950 -3.1376 -3.3519 21 6 6.3305 -2.5942 -4.1203 22 6 7.4846 -2.1925 -3.5183 23 6 7.6302 -2.3270 -2.1231 24 7 8.6232 -2.0248 -1.2985 25 6 8.2717 -2.3479 -0.0545 26 6 7.0225 -2.8707 -0.0811 27 7 6.6104 -2.8626 -1.3798 28 6 1.8163 -3.6516 0.2153 29 1 -0.4851 0.8400 -0.0004 30 1 0.0836 -1.3442 -1.6485 31 1 -0.6836 -2.6453 -0.7020 32 1 1.3197 -2.9848 -2.9817 33 1 -0.4110 -3.4020 -3.0171 34 1 0.9578 -5.4205 -2.6154 35 1 -0.0386 -5.0484 -1.1884 36 1 1.5459 -6.3925 0.1714 37 1 2.6257 -6.6837 -1.2134 38 1 3.8032 -6.7530 0.8639 39 1 3.0628 -4.0338 -2.7205 40 1 4.3794 -3.4563 -3.8280 41 1 6.2149 -2.4933 -5.1893 42 1 8.2855 -1.7723 -4.1085 43 1 8.8794 -2.2116 0.8278 44 1 6.4586 -3.2273 0.7681 45 1 1.0489 -4.0558 0.8754 46 1 2.7422 -3.5087 0.7723 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484440607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:10 Heat of formation + Delta-G solvation = 51.200361 kcal Electronic energy + Delta-G solvation = -32255.756044 eV Core-core repulsion = 28148.326524 eV Total energy + Delta-G solvation = -4107.429520 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.67637 -40.09061 -37.74945 -36.80718 -35.95357 -34.12591 -33.37403 -32.40372 -30.69486 -30.46053 -29.50258 -28.47126 -25.41345 -25.20827 -24.71094 -22.60906 -22.26523 -22.18387 -21.03895 -20.38402 -18.81995 -17.67205 -17.45566 -16.74096 -16.66697 -16.47343 -15.90336 -15.44101 -15.35228 -15.01816 -14.67470 -14.20933 -14.00193 -13.79241 -13.69700 -13.43635 -13.20577 -12.89608 -12.70309 -12.42574 -12.27761 -12.21574 -11.95775 -11.64319 -11.48154 -11.33574 -11.00729 -10.96162 -10.75872 -10.44272 -10.35846 -10.07485 -10.05159 -9.78512 -9.74384 -9.58583 -9.10772 -8.74899 -8.59702 -8.40394 -7.72841 -6.64976 -5.78239 -3.19652 0.40515 1.35658 2.51748 2.78421 3.33600 3.39344 3.43428 3.43879 3.47606 3.76462 4.29120 4.46365 4.50156 4.57957 4.63613 4.76178 5.05370 5.17119 5.27070 5.36921 5.41382 5.45005 5.50551 5.55943 5.58721 5.64676 5.67938 5.80653 5.83598 5.99098 6.07097 6.09478 6.18526 6.38172 6.46045 6.48432 6.50046 6.72812 6.75574 6.95178 7.09116 7.15979 7.29542 7.61155 7.80731 7.82671 7.96069 7.98803 8.46591 8.58043 9.23614 9.85971 10.41653 11.30300 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009096 B = 0.005551 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3077.677827 B = 5043.011495 C = 6506.940810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.003 3.997 3 Si 0.897 3.103 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.060 0.940 9 N -0.583 5.583 10 C 0.167 3.833 11 C -0.142 4.142 12 C -0.111 4.111 13 C 0.166 3.834 14 C 0.070 3.930 15 O -0.526 6.526 16 N -0.691 5.691 17 C 0.559 3.441 18 O -0.476 6.476 19 C 0.058 3.942 20 C -0.102 4.102 21 C -0.115 4.115 22 C -0.059 4.059 23 C 0.200 3.800 24 N -0.490 5.490 25 C 0.015 3.985 26 C -0.056 4.056 27 N -0.334 5.334 28 C 0.136 3.864 29 H 0.253 0.747 30 H 0.089 0.911 31 H 0.018 0.982 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.034 0.966 38 H 0.354 0.646 39 H 0.391 0.609 40 H 0.150 0.850 41 H 0.146 0.854 42 H 0.151 0.849 43 H 0.181 0.819 44 H 0.195 0.805 45 H 0.020 0.980 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.018 -12.446 -8.787 16.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.195 4.195 3 Si 0.727 3.273 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.370 4.370 8 H 0.078 0.922 9 N -0.305 5.305 10 C 0.041 3.959 11 C -0.181 4.181 12 C -0.149 4.149 13 C 0.078 3.922 14 C -0.010 4.010 15 O -0.328 6.328 16 N -0.343 5.343 17 C 0.343 3.657 18 O -0.349 6.349 19 C -0.049 4.049 20 C -0.124 4.124 21 C -0.139 4.139 22 C -0.079 4.079 23 C -0.041 4.041 24 N -0.210 5.210 25 C -0.136 4.136 26 C -0.190 4.190 27 N -0.006 5.006 28 C 0.008 3.992 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.199 0.801 39 H 0.226 0.774 40 H 0.167 0.833 41 H 0.164 0.836 42 H 0.169 0.831 43 H 0.198 0.802 44 H 0.212 0.788 45 H 0.038 0.962 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.680 -11.439 -8.202 16.034 hybrid contribution -0.568 0.042 -0.126 0.583 sum 7.112 -11.397 -8.328 15.806 Atomic orbital electron populations 1.70002 1.05090 1.25437 1.54441 1.24973 0.95233 0.98144 1.01137 0.86452 0.78961 0.83677 0.78240 1.21241 1.21574 1.20871 1.19052 0.92146 0.84521 1.41301 0.92198 1.43972 1.34521 1.01479 1.50523 1.20821 0.88752 0.98195 0.88157 1.22203 1.00167 0.95481 1.00269 1.21647 0.96048 0.98705 0.98546 1.21040 0.84770 0.92870 0.93507 1.22561 0.89280 0.96407 0.92771 1.87146 1.47396 1.33571 1.64687 1.45478 1.10924 1.67442 1.10482 1.17200 0.81898 0.79337 0.87255 1.90812 1.80479 1.49744 1.13874 1.20478 0.87867 1.03600 0.92980 1.21242 1.00389 1.00034 0.90756 1.20897 0.92555 0.99528 1.00882 1.20344 0.99019 0.99329 0.89202 1.20974 0.85661 1.03445 0.94062 1.70601 1.25644 1.23618 1.01132 1.22563 0.94369 1.01211 0.95469 1.23176 0.98617 1.11210 0.85986 1.42532 1.11216 1.38163 1.08650 1.21324 0.99830 0.86199 0.91817 0.93693 0.89329 0.96408 0.92821 0.92703 0.92834 0.90678 0.93427 0.94741 0.80134 0.77377 0.83280 0.83609 0.83142 0.80202 0.78839 0.96197 0.88904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.09 11.15 55.49 0.62 -25.47 16 2 C 0.00 0.09 4.93 -17.43 -0.09 0.00 16 3 Si 0.90 22.50 29.58 -169.99 -5.03 17.47 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.24 -6.65 9.59 -15.06 -0.14 -6.79 16 8 H 0.06 1.74 7.88 -52.49 -0.41 1.33 16 9 N -0.58 -14.11 2.91 -172.32 -0.50 -14.61 16 10 C 0.17 3.73 5.30 -3.71 -0.02 3.71 16 11 C -0.14 -2.33 5.91 -26.61 -0.16 -2.49 16 12 C -0.11 -1.57 4.74 -26.69 -0.13 -1.69 16 13 C 0.17 2.65 0.67 -131.69 -0.09 2.56 16 14 C 0.07 0.95 6.11 37.15 0.23 1.18 16 15 O -0.53 -7.96 9.33 -60.17 -0.56 -8.52 16 16 N -0.69 -10.62 4.53 -48.67 -0.22 -10.84 16 17 C 0.56 9.77 7.04 -12.69 -0.09 9.68 16 18 O -0.48 -9.44 9.09 -19.71 -0.18 -9.62 16 19 C 0.06 0.93 6.78 -81.86 -0.56 0.37 16 20 C -0.10 -1.26 9.52 -39.18 -0.37 -1.63 16 21 C -0.12 -1.22 10.04 -39.67 -0.40 -1.62 16 22 C -0.06 -0.73 10.09 -39.29 -0.40 -1.13 16 23 C 0.20 3.27 7.80 -156.03 -1.22 2.05 16 24 N -0.49 -8.37 11.31 -12.76 -0.14 -8.51 16 25 C 0.02 0.24 11.83 -17.94 -0.21 0.03 16 26 C -0.06 -0.95 10.80 -16.59 -0.18 -1.13 16 27 N -0.33 -5.73 2.97 -58.75 -0.17 -5.91 16 28 C 0.14 2.88 4.78 -3.71 -0.02 2.86 16 29 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.09 2.26 6.04 -51.93 -0.31 1.95 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.86 6.90 -51.93 -0.36 0.50 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.35 3.79 9.12 45.56 0.42 4.21 16 39 H 0.39 5.00 5.50 -40.82 -0.22 4.77 16 40 H 0.15 1.38 6.34 -52.48 -0.33 1.05 16 41 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.15 1.46 8.06 -52.48 -0.42 1.04 16 43 H 0.18 2.16 8.06 -52.48 -0.42 1.74 16 44 H 0.19 3.30 6.67 -52.49 -0.35 2.95 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.09 2.23 5.26 -51.93 -0.27 1.95 16 LS Contribution 361.32 15.07 5.44 5.44 Total: -1.00 -34.98 361.32 -9.79 -44.77 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -5.21 Total: 9.84 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: -3.83 Total: 5.96 kcal Atomic # 7 Polarization: -64.92 SS G_CDS: -0.42 Total: -65.34 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.74 Total: -18.14 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.03 Total: 17.47 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.98 -9.79 -44.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484440607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.974 kcal (2) G-P(sol) polarization free energy of solvation -34.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds