Wall clock time and date at job start Wed Apr 1 2020 03:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99734 * 2 1 4 4 H 1.48496 * 109.47209 * 239.99718 * 3 2 1 5 5 H 1.48500 * 109.47223 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47038 * 119.99566 * 3 2 1 7 7 C 1.38813 * 120.00494 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00012 * 196.31491 * 7 2 1 9 9 N 1.36939 * 119.99747 * 16.31602 * 7 2 1 10 10 C 1.46930 * 120.62729 * 28.14735 * 9 7 2 11 11 C 1.53196 * 108.77288 * 126.39277 * 10 9 7 12 12 C 1.53041 * 109.31412 * 54.63284 * 11 10 9 13 13 C 1.53048 * 109.53745 * 298.63582 * 12 11 10 14 14 C 1.52993 * 109.49752 * 181.35073 * 13 12 11 15 15 O 1.42899 * 109.47418 * 183.32319 * 14 13 12 16 16 N 1.46503 * 109.49362 * 301.41431 * 13 12 11 17 17 C 1.34774 * 119.99484 * 172.56824 * 16 13 12 18 18 O 1.21657 * 120.00173 * 4.07221 * 17 16 13 19 19 C 1.47046 * 119.99993 * 184.07464 * 17 16 13 20 20 C 1.37603 * 119.93462 * 354.88969 * 19 17 16 21 21 C 1.39933 * 120.02032 * 179.97438 * 20 19 17 22 22 C 1.36217 * 119.91830 * 359.97438 * 21 20 19 23 23 C 1.40920 * 119.79999 * 0.02562 * 22 21 20 24 24 N 1.32566 * 132.18471 * 179.97438 * 23 22 21 25 25 C 1.33241 * 109.13687 * 180.02562 * 24 23 22 26 26 C 1.35447 * 108.57944 * 0.02562 * 25 24 23 27 27 N 1.36250 * 107.17678 * 0.02562 * 26 25 24 28 28 C 1.46920 * 120.62898 * 208.14836 * 9 7 2 29 29 H 0.97001 * 120.00362 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.58942 * 6.60660 * 10 9 7 31 31 H 1.09003 * 109.58715 * 246.17600 * 10 9 7 32 32 H 1.09004 * 109.49296 * 294.68230 * 11 10 9 33 33 H 1.09000 * 109.49780 * 174.58908 * 11 10 9 34 34 H 1.09003 * 109.46067 * 178.61598 * 12 11 10 35 35 H 1.08999 * 109.46076 * 58.65656 * 12 11 10 36 36 H 1.09007 * 109.47109 * 303.32214 * 14 13 12 37 37 H 1.09005 * 109.47506 * 63.31692 * 14 13 12 38 38 H 0.96697 * 114.00361 * 179.97438 * 15 14 13 39 39 H 0.96996 * 120.00250 * 352.56186 * 16 13 12 40 40 H 1.08009 * 119.98877 * 359.95780 * 20 19 17 41 41 H 1.07999 * 120.04189 * 179.97438 * 21 20 19 42 42 H 1.08005 * 120.09711 * 180.02562 * 22 21 20 43 43 H 1.08004 * 125.71150 * 180.26782 * 25 24 23 44 44 H 1.07994 * 126.41271 * 180.02562 * 26 25 24 45 45 H 1.08997 * 109.58876 * 113.82773 * 28 9 7 46 46 H 1.08993 * 109.58994 * 353.39462 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0576 -1.2207 0.2633 9 7 1.3671 -2.3643 -0.3321 10 6 0.2145 -2.3476 -1.2432 11 6 0.4755 -3.3332 -2.3866 12 6 0.7958 -4.7115 -1.8035 13 6 2.0593 -4.6227 -0.9444 14 6 2.3978 -6.0076 -0.3893 15 8 3.5319 -5.9104 0.4746 16 7 3.1738 -4.1380 -1.7626 17 6 4.3534 -3.8372 -1.1842 18 8 4.5167 -4.0379 0.0046 19 6 5.4430 -3.2664 -1.9899 20 6 5.2950 -3.1376 -3.3519 21 6 6.3305 -2.5942 -4.1203 22 6 7.4846 -2.1925 -3.5183 23 6 7.6302 -2.3270 -2.1231 24 7 8.6232 -2.0248 -1.2985 25 6 8.2717 -2.3479 -0.0545 26 6 7.0225 -2.8707 -0.0811 27 7 6.6104 -2.8626 -1.3798 28 6 1.8163 -3.6516 0.2153 29 1 -0.4851 0.8400 -0.0004 30 1 0.0836 -1.3442 -1.6485 31 1 -0.6836 -2.6453 -0.7020 32 1 1.3197 -2.9848 -2.9817 33 1 -0.4110 -3.4020 -3.0171 34 1 0.9578 -5.4205 -2.6154 35 1 -0.0386 -5.0484 -1.1884 36 1 1.5459 -6.3925 0.1714 37 1 2.6257 -6.6837 -1.2134 38 1 3.8032 -6.7530 0.8639 39 1 3.0628 -4.0338 -2.7205 40 1 4.3794 -3.4563 -3.8280 41 1 6.2149 -2.4933 -5.1893 42 1 8.2855 -1.7723 -4.1085 43 1 8.8794 -2.2116 0.8278 44 1 6.4586 -3.2273 0.7681 45 1 1.0489 -4.0558 0.8754 46 1 2.7422 -3.5087 0.7723 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484440607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:08 Heat of formation + Delta-G solvation = 26.798861 kcal Electronic energy + Delta-G solvation = -32256.814172 eV Core-core repulsion = 28148.326524 eV Total energy + Delta-G solvation = -4108.487648 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.82052 -41.39113 -39.05182 -37.96826 -37.23843 -35.70520 -34.48244 -33.96811 -32.31353 -31.98568 -30.70761 -29.61961 -27.34388 -26.54850 -25.82492 -23.90065 -23.73719 -23.36089 -22.45024 -21.71857 -20.24190 -18.88171 -18.72506 -18.42230 -17.83617 -17.56587 -17.10305 -16.94446 -16.61334 -16.39708 -16.12180 -15.73537 -15.48031 -15.06366 -14.96921 -14.64292 -14.50937 -14.43711 -14.24105 -13.87320 -13.45966 -13.33942 -13.16321 -13.01418 -12.94500 -12.85240 -12.68645 -12.48274 -12.35518 -12.03605 -11.99979 -11.74000 -11.37218 -11.32678 -11.30066 -10.74663 -10.56897 -10.47577 -9.89854 -9.83256 -8.87367 -8.63641 -7.91069 -5.33985 -0.65206 0.30109 1.34943 1.36568 1.39420 1.43693 1.61149 2.12621 2.25937 2.43770 2.63162 3.21706 3.25933 3.38616 3.50381 3.60075 3.66952 3.84730 4.01964 4.09588 4.13436 4.32465 4.39034 4.44421 4.47857 4.51645 4.53123 4.65538 4.78768 4.86895 4.89642 4.93010 4.99608 5.03745 5.09506 5.17780 5.28827 5.34307 5.46486 5.51873 5.61016 5.62942 5.70362 5.80147 5.95768 6.36846 6.62862 6.77223 7.08976 7.14892 7.37886 7.87187 8.35417 9.13223 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009096 B = 0.005551 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3077.677827 B = 5043.011495 C = 6506.940810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.040 4.040 3 Si 0.949 3.051 4 H -0.282 1.282 5 H -0.284 1.284 6 H -0.290 1.290 7 C -0.241 4.241 8 H 0.036 0.964 9 N -0.595 5.595 10 C 0.169 3.831 11 C -0.129 4.129 12 C -0.104 4.104 13 C 0.171 3.829 14 C 0.072 3.928 15 O -0.554 6.554 16 N -0.682 5.682 17 C 0.552 3.448 18 O -0.511 6.511 19 C 0.009 3.991 20 C -0.078 4.078 21 C -0.096 4.096 22 C -0.067 4.067 23 C 0.184 3.816 24 N -0.518 5.518 25 C 0.017 3.983 26 C -0.091 4.091 27 N -0.342 5.342 28 C 0.137 3.863 29 H 0.250 0.750 30 H 0.053 0.947 31 H -0.006 1.006 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.371 0.629 39 H 0.406 0.594 40 H 0.185 0.815 41 H 0.199 0.801 42 H 0.180 0.820 43 H 0.206 0.794 44 H 0.179 0.821 45 H 0.005 0.995 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.029 -13.866 -12.789 20.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.236 4.236 3 Si 0.778 3.222 4 H -0.208 1.208 5 H -0.210 1.210 6 H -0.217 1.217 7 C -0.372 4.372 8 H 0.053 0.947 9 N -0.318 5.318 10 C 0.044 3.956 11 C -0.168 4.168 12 C -0.141 4.141 13 C 0.084 3.916 14 C -0.007 4.007 15 O -0.359 6.359 16 N -0.335 5.335 17 C 0.337 3.663 18 O -0.387 6.387 19 C -0.098 4.098 20 C -0.100 4.100 21 C -0.119 4.119 22 C -0.087 4.087 23 C -0.058 4.058 24 N -0.239 5.239 25 C -0.135 4.135 26 C -0.224 4.224 27 N -0.014 5.014 28 C 0.010 3.990 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.012 0.988 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.122 0.878 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.218 0.782 39 H 0.244 0.756 40 H 0.202 0.798 41 H 0.216 0.784 42 H 0.198 0.802 43 H 0.223 0.777 44 H 0.196 0.804 45 H 0.023 0.977 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.676 -12.903 -12.235 19.367 hybrid contribution -0.580 0.467 1.110 1.337 sum 7.096 -12.435 -11.125 18.132 Atomic orbital electron populations 1.70122 1.05918 1.25644 1.55714 1.25500 0.95914 1.00395 1.01815 0.85638 0.77856 0.80925 0.77793 1.20818 1.20977 1.21680 1.19027 0.91267 0.86255 1.40620 0.94653 1.44122 1.34760 1.01486 1.51389 1.20719 0.87218 0.98192 0.89461 1.22014 1.01830 0.94998 0.97966 1.21644 0.94709 0.98177 0.99614 1.20896 0.86220 0.92516 0.92014 1.22572 0.89359 0.95077 0.93739 1.87126 1.48092 1.35366 1.65334 1.45352 1.10008 1.67045 1.11098 1.17560 0.82700 0.78953 0.87132 1.90800 1.81224 1.51205 1.15503 1.20674 0.87782 1.06846 0.94468 1.21873 1.01885 0.97019 0.89186 1.21512 0.90646 0.96685 1.03091 1.20908 1.00860 0.99300 0.87594 1.21742 0.85310 1.03119 0.95616 1.70592 1.26545 1.25117 1.01644 1.22976 0.94127 1.00214 0.96156 1.23101 0.99440 1.13496 0.86394 1.42643 1.11847 1.38317 1.08596 1.21295 0.97432 0.86302 0.93962 0.94027 0.92901 0.98803 0.92008 0.89874 0.87792 0.90356 0.92290 0.91528 0.78182 0.75643 0.79789 0.78360 0.80236 0.77724 0.80423 0.97709 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.03 11.15 21.65 0.24 -54.79 16 2 C -0.04 -2.33 4.93 84.86 0.42 -1.91 16 3 Si 0.95 47.45 29.58 68.60 2.03 49.48 16 4 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 5 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 7 C -0.24 -13.84 9.59 84.03 0.81 -13.03 16 8 H 0.04 2.18 7.88 -2.91 -0.02 2.16 16 9 N -0.59 -29.54 2.91 -699.11 -2.04 -31.58 16 10 C 0.17 7.61 5.30 86.36 0.46 8.07 16 11 C -0.13 -3.85 5.91 30.67 0.18 -3.66 16 12 C -0.10 -2.50 4.74 30.62 0.15 -2.36 16 13 C 0.17 5.17 0.67 3.68 0.00 5.17 16 14 C 0.07 1.79 6.11 71.98 0.44 2.23 16 15 O -0.55 -16.75 9.33 -125.14 -1.17 -17.92 16 16 N -0.68 -19.57 4.53 -426.13 -1.93 -21.50 16 17 C 0.55 19.28 7.04 86.55 0.61 19.89 16 18 O -0.51 -21.36 9.09 19.63 0.18 -21.18 16 19 C 0.01 0.27 6.78 40.37 0.27 0.55 16 20 C -0.08 -1.63 9.52 22.53 0.21 -1.42 16 21 C -0.10 -1.58 10.04 22.21 0.22 -1.35 16 22 C -0.07 -1.46 10.09 22.46 0.23 -1.23 16 23 C 0.18 5.91 7.80 134.10 1.05 6.96 16 24 N -0.52 -17.90 11.31 -194.28 -2.20 -20.10 16 25 C 0.02 0.55 11.83 83.83 0.99 1.54 16 26 C -0.09 -3.30 10.80 83.36 0.90 -2.40 16 27 N -0.34 -11.99 2.97 -339.79 -1.01 -13.00 16 28 C 0.14 5.96 4.78 86.36 0.41 6.38 16 29 H 0.25 14.44 8.31 -92.71 -0.77 13.66 16 30 H 0.05 2.75 6.04 -2.39 -0.01 2.73 16 31 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 32 H 0.06 1.75 6.90 -2.39 -0.02 1.74 16 33 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.37 7.84 9.12 -74.06 -0.68 7.17 16 39 H 0.41 8.76 5.50 -92.71 -0.51 8.25 16 40 H 0.19 2.40 6.34 -2.91 -0.02 2.38 16 41 H 0.20 1.21 8.06 -2.91 -0.02 1.19 16 42 H 0.18 2.78 8.06 -2.91 -0.02 2.76 16 43 H 0.21 5.15 8.06 -2.91 -0.02 5.12 16 44 H 0.18 6.82 6.67 -2.91 -0.02 6.80 16 45 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 46 H 0.06 2.98 5.26 -2.39 -0.01 2.97 16 Total: -1.00 -83.81 361.32 1.31 -82.49 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: -0.15 Total: 24.68 kcal Atomic # 6 Polarization: 16.07 SS G_CDS: 7.35 Total: 23.42 kcal Atomic # 7 Polarization: -134.03 SS G_CDS: -6.93 Total: -140.96 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -0.99 Total: -39.10 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -83.81 1.31 -82.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484440607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.293 kcal (2) G-P(sol) polarization free energy of solvation -83.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds