Wall clock time and date at job start Wed Apr 1 2020 03:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00051 * 2 1 4 4 H 1.48501 * 109.47098 * 85.35927 * 3 2 1 5 5 H 1.48493 * 109.47161 * 325.35982 * 3 2 1 6 6 H 1.48505 * 109.47060 * 205.35681 * 3 2 1 7 7 C 1.38813 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99726 * 197.84167 * 7 2 1 9 9 N 1.36932 * 120.00216 * 17.83429 * 7 2 1 10 10 C 1.46926 * 120.62923 * 27.51552 * 9 7 2 11 11 C 1.53188 * 108.77817 * 126.37040 * 10 9 7 12 12 C 1.53040 * 109.30921 * 54.63345 * 11 10 9 13 13 C 1.53042 * 109.54174 * 298.63667 * 12 11 10 14 14 H 1.09004 * 109.49537 * 301.41753 * 13 12 11 15 15 N 1.46500 * 109.49765 * 181.31850 * 13 12 11 16 16 C 1.34779 * 119.99785 * 155.00212 * 15 13 12 17 17 O 1.21693 * 119.99880 * 359.97438 * 16 15 13 18 18 C 1.46652 * 119.99973 * 180.02562 * 16 15 13 19 19 C 1.36542 * 125.98984 * 179.71845 * 18 16 15 20 20 C 1.40368 * 106.70970 * 179.85087 * 19 18 16 21 21 C 1.35127 * 107.11170 * 0.40270 * 20 19 18 22 22 C 1.50704 * 125.61526 * 179.78417 * 21 20 19 23 23 N 1.46501 * 109.47423 * 89.98312 * 22 21 20 24 24 C 1.34945 * 126.03839 * 124.71435 * 23 22 21 25 25 C 1.35311 * 107.74648 * 179.84159 * 24 23 22 26 26 C 1.39873 * 107.92236 * 0.42669 * 25 24 23 27 27 N 1.30839 * 108.19748 * 359.73699 * 26 25 24 28 28 O 1.33924 * 108.77211 * 359.75103 * 21 20 19 29 29 C 1.46930 * 120.63214 * 207.24189 * 9 7 2 30 30 H 0.97004 * 120.00090 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.58614 * 246.15922 * 10 9 7 32 32 H 1.09001 * 109.58573 * 6.43899 * 10 9 7 33 33 H 1.09002 * 109.50053 * 174.58723 * 11 10 9 34 34 H 1.08998 * 109.49616 * 294.68710 * 11 10 9 35 35 H 1.09004 * 109.46163 * 58.65925 * 12 11 10 36 36 H 1.09008 * 109.45973 * 178.63157 * 12 11 10 37 37 H 0.97000 * 119.99981 * 334.99941 * 15 13 12 38 38 H 1.07998 * 126.64571 * 359.95536 * 19 18 16 39 39 H 1.08003 * 126.44228 * 180.15439 * 20 19 18 40 40 H 1.08999 * 109.47480 * 209.98688 * 22 21 20 41 41 H 1.09007 * 109.47132 * 329.98273 * 22 21 20 42 42 H 1.08004 * 126.12148 * 0.02562 * 24 23 22 43 43 H 1.07998 * 126.04189 * 180.15793 * 25 24 23 44 44 H 1.07992 * 125.89968 * 179.75496 * 26 25 24 45 45 H 1.09000 * 109.58323 * 353.41367 * 29 9 7 46 46 H 1.08997 * 109.58717 * 113.84310 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3996 2.1031 1.3955 5 1 1.5001 2.6223 -0.7958 6 1 3.5934 1.4138 -0.5996 7 6 2.0102 -1.2022 -0.0005 8 1 3.0513 -1.2247 0.2860 9 7 1.3750 -2.3594 -0.3642 10 6 0.2349 -2.3282 -1.2905 11 6 0.5144 -3.2904 -2.4492 12 6 0.8311 -4.6789 -1.8888 13 6 2.0825 -4.6033 -1.0110 14 1 2.9188 -4.2285 -1.6012 15 7 2.4030 -5.9386 -0.5005 16 6 3.6687 -6.2394 -0.1481 17 8 4.5453 -5.4020 -0.2545 18 6 3.9897 -7.5762 0.3624 19 6 5.2246 -8.0126 0.7481 20 6 5.0696 -9.3430 1.1680 21 6 3.7650 -9.6592 1.0135 22 6 3.1411 -10.9927 1.3354 23 7 2.6824 -10.9943 2.7268 24 6 1.4305 -11.2677 3.1497 25 6 1.4197 -11.1663 4.4990 26 6 2.7068 -10.8095 4.9142 27 7 3.4646 -10.7061 3.8526 28 8 3.1175 -8.5922 0.5279 29 6 1.8242 -3.6565 0.1597 30 1 -0.4850 0.8401 -0.0004 31 1 -0.6695 -2.6391 -0.7674 32 1 0.1047 -1.3169 -1.6758 33 1 -0.3632 -3.3495 -3.0930 34 1 1.3654 -2.9281 -3.0258 35 1 -0.0105 -5.0302 -1.2918 36 1 1.0066 -5.3714 -2.7121 37 1 1.7044 -6.6061 -0.4160 38 1 6.1426 -7.4438 0.7346 39 1 5.8476 -9.9930 1.5403 40 1 2.2930 -11.1665 0.6731 41 1 3.8792 -11.7825 1.1953 42 1 0.5888 -11.5245 2.5236 43 1 0.5667 -11.3278 5.1415 44 1 3.0209 -10.6477 5.9347 45 1 2.7440 -3.5219 0.7288 46 1 1.0521 -4.0779 0.8033 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007396830.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:39 Heat of formation + Delta-G solvation = 87.519705 kcal Electronic energy + Delta-G solvation = -29328.781332 eV Core-core repulsion = 25222.926738 eV Total energy + Delta-G solvation = -4105.854595 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.97409 -41.36104 -39.55977 -37.37773 -34.65669 -34.38292 -33.19803 -32.45558 -30.78712 -30.48197 -30.04974 -28.75419 -26.70413 -25.29509 -23.33689 -22.15136 -22.08720 -21.65986 -21.34119 -20.91981 -20.18692 -19.51997 -18.22247 -17.71944 -16.80001 -16.55763 -16.12887 -15.71095 -15.37146 -14.81887 -14.68402 -14.35975 -14.30054 -13.89421 -13.88009 -13.46714 -13.38676 -13.33038 -13.20408 -13.11006 -13.07280 -12.43281 -12.42521 -12.31058 -11.85533 -11.12827 -10.97856 -10.93763 -10.77532 -10.30549 -10.26929 -10.25381 -10.23257 -9.91148 -9.81404 -9.69264 -9.65657 -9.06063 -8.95997 -8.77066 -8.40487 -6.68357 -5.78196 -3.19530 0.74932 1.52657 1.87350 2.31605 2.47030 2.57439 3.18156 3.25062 3.40348 3.47271 3.51957 4.07589 4.11285 4.47469 4.52418 4.60806 4.69663 4.73057 4.86520 5.23096 5.24169 5.36414 5.40875 5.44268 5.49855 5.51870 5.58789 5.65098 5.68922 5.70192 6.03344 6.09853 6.10690 6.20916 6.31531 6.45317 6.54656 6.58157 6.60174 6.60895 6.68710 6.81097 6.94922 7.34388 7.37240 7.59482 7.63847 7.83939 8.18941 8.45792 9.22314 9.84586 10.39980 11.30818 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014899 B = 0.002262 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.926198 B =12375.159173 C =12597.489655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.251 4.251 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.166 3.834 11 C -0.139 4.139 12 C -0.114 4.114 13 C 0.124 3.876 14 H 0.090 0.910 15 N -0.708 5.708 16 C 0.596 3.404 17 O -0.511 6.511 18 C -0.051 4.051 19 C -0.130 4.130 20 C -0.170 4.170 21 C -0.025 4.025 22 C 0.220 3.780 23 N -0.378 5.378 24 C 0.056 3.944 25 C -0.271 4.271 26 C 0.047 3.953 27 N -0.286 5.286 28 O -0.159 6.159 29 C 0.141 3.859 30 H 0.253 0.747 31 H 0.019 0.981 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.399 0.601 38 H 0.163 0.837 39 H 0.158 0.842 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.175 0.825 43 H 0.149 0.851 44 H 0.184 0.816 45 H 0.059 0.941 46 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.230 -27.142 1.493 27.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.085 0.915 9 N -0.310 5.310 10 C 0.040 3.960 11 C -0.179 4.179 12 C -0.153 4.153 13 C 0.019 3.981 14 H 0.108 0.892 15 N -0.358 5.358 16 C 0.381 3.619 17 O -0.388 6.388 18 C -0.104 4.104 19 C -0.151 4.151 20 C -0.191 4.191 21 C -0.077 4.077 22 C 0.099 3.901 23 N -0.162 5.162 24 C -0.089 4.089 25 C -0.300 4.300 26 C -0.140 4.140 27 N -0.107 5.107 28 O -0.055 6.055 29 C 0.014 3.986 30 H 0.063 0.937 31 H 0.037 0.963 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.233 0.767 38 H 0.181 0.819 39 H 0.175 0.825 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.193 0.807 43 H 0.166 0.834 44 H 0.201 0.799 45 H 0.077 0.923 46 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 3.621 -26.076 0.748 26.337 hybrid contribution -0.707 0.306 0.516 0.927 sum 2.914 -25.770 1.264 25.965 Atomic orbital electron populations 1.70046 1.05258 1.25490 1.54020 1.25010 0.95286 0.98412 1.00916 0.86276 0.79332 0.83557 0.77647 1.21441 1.21528 1.20310 1.19226 0.93013 0.84731 1.41053 0.91511 1.43992 1.35946 1.00795 1.50227 1.20859 0.88625 0.98732 0.87735 1.22178 1.00551 0.94990 1.00167 1.21683 0.96612 0.98767 0.98207 1.21787 0.98239 0.80574 0.97462 0.89215 1.46084 1.08720 1.16092 1.64899 1.16557 0.83622 0.83518 0.78223 1.90929 1.47200 1.46553 1.54117 1.22415 0.89282 0.89260 1.09409 1.21991 0.97987 0.95158 0.99928 1.21600 0.96248 0.96702 1.04504 1.22384 0.91968 0.89443 1.03904 1.19948 1.01711 0.90453 0.78035 1.48733 1.07424 1.54185 1.05832 1.22630 0.88681 1.01169 0.96429 1.21568 0.99249 1.15017 0.94209 1.23976 0.92556 0.99081 0.98405 1.77430 1.19187 1.22316 0.91762 1.83983 1.38143 1.19091 1.64262 1.21098 0.98090 0.86879 0.92568 0.93667 0.96274 0.89151 0.92585 0.92317 0.92147 0.92970 0.76690 0.81912 0.82461 0.86582 0.86277 0.80748 0.83364 0.79931 0.92290 0.96428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.43 11.20 55.49 0.62 -25.81 16 2 C 0.00 0.06 4.90 -17.43 -0.09 -0.03 16 3 Si 0.90 22.21 29.59 -169.99 -5.03 17.18 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.25 -7.12 9.58 -15.06 -0.14 -7.27 16 8 H 0.07 1.91 7.89 -52.48 -0.41 1.50 16 9 N -0.59 -15.08 3.00 -172.58 -0.52 -15.60 16 10 C 0.17 3.93 5.32 -3.71 -0.02 3.91 16 11 C -0.14 -2.58 6.08 -26.61 -0.16 -2.74 16 12 C -0.11 -1.85 5.36 -26.69 -0.14 -1.99 16 13 C 0.12 2.27 2.59 -68.03 -0.18 2.09 16 14 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16 15 N -0.71 -10.89 5.08 -55.22 -0.28 -11.17 16 16 C 0.60 9.91 7.75 -12.86 -0.10 9.81 16 17 O -0.51 -10.34 16.53 5.20 0.09 -10.25 16 18 C -0.05 -0.71 7.13 -36.80 -0.26 -0.97 16 19 C -0.13 -1.63 10.62 -39.39 -0.42 -2.05 16 20 C -0.17 -1.75 10.77 -39.89 -0.43 -2.18 16 21 C -0.02 -0.24 6.75 -35.41 -0.24 -0.48 16 22 C 0.22 1.38 7.04 -5.19 -0.04 1.34 16 23 N -0.38 -3.32 3.67 -62.54 -0.23 -3.55 16 24 C 0.06 0.41 11.45 -17.23 -0.20 0.21 16 25 C -0.27 -2.14 10.80 -40.01 -0.43 -2.57 16 26 C 0.05 0.43 12.03 -17.36 -0.21 0.22 16 27 N -0.29 -3.16 12.41 30.62 0.38 -2.78 16 28 O -0.16 -1.91 10.40 4.99 0.05 -1.86 16 29 C 0.14 3.15 6.06 -3.93 -0.02 3.12 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 2.39 6.03 -51.93 -0.31 2.08 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 37 H 0.40 5.06 8.36 -40.82 -0.34 4.72 16 38 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 39 H 0.16 1.27 8.06 -52.48 -0.42 0.85 16 40 H 0.12 0.39 8.07 -51.93 -0.42 -0.03 16 41 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.18 0.65 8.06 -52.48 -0.42 0.22 16 43 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 45 H 0.06 1.41 7.93 -51.93 -0.41 1.00 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 388.87 15.07 5.86 5.86 Total: -1.00 -35.32 388.87 -8.64 -43.95 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.50 Total: 3.63 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -3.08 Total: 0.42 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: -0.03 Total: -58.92 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.14 Total: -12.11 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.32 -8.64 -43.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007396830.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.474 kcal (2) G-P(sol) polarization free energy of solvation -35.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds