Wall clock time and date at job start Wed Apr 1 2020 03:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86799 * 119.99973 * 2 1 4 4 H 1.48502 * 109.46835 * 269.99918 * 3 2 1 5 5 H 1.48497 * 109.47269 * 30.00316 * 3 2 1 6 6 H 1.48504 * 109.46746 * 150.00376 * 3 2 1 7 7 C 1.38801 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99761 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00169 * 359.97438 * 7 2 1 10 10 C 1.81006 * 100.00122 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47299 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47195 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.47204 * 180.02562 * 12 11 10 14 14 C 1.46955 * 111.00233 * 190.00090 * 13 12 11 15 15 C 1.53049 * 109.36962 * 176.80960 * 14 13 12 16 16 N 1.46956 * 109.37889 * 58.38792 * 15 14 13 17 17 C 1.46901 * 110.99929 * 176.82469 * 16 15 14 18 18 C 1.50707 * 110.45723 * 300.70354 * 17 16 15 19 19 O 1.20823 * 120.00024 * 145.00187 * 18 17 16 20 20 O 1.34225 * 119.99626 * 325.00030 * 18 17 16 21 21 C 1.54502 * 110.51481 * 178.09859 * 17 16 15 22 22 C 1.54479 * 104.06727 * 241.35684 * 21 17 16 23 23 O 1.44424 * 104.79905 * 23.97478 * 22 21 17 24 24 C 1.44787 * 105.29600 * 319.45400 * 23 22 21 25 25 C 1.46957 * 110.88202 * 300.71439 * 16 15 14 26 26 C 1.46955 * 111.00423 * 66.20027 * 13 12 11 27 27 H 0.96999 * 120.00241 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46735 * 60.00086 * 10 9 7 29 29 H 1.08998 * 109.47307 * 300.00791 * 10 9 7 30 30 H 1.09002 * 109.46769 * 59.99999 * 11 10 9 31 31 H 1.08998 * 109.47233 * 300.00423 * 11 10 9 32 32 H 1.08998 * 109.46965 * 60.00143 * 12 11 10 33 33 H 1.09007 * 109.47084 * 300.00231 * 12 11 10 34 34 H 1.09005 * 109.49150 * 56.83886 * 14 13 12 35 35 H 1.09006 * 109.48712 * 296.78139 * 14 13 12 36 36 H 1.09002 * 109.49200 * 178.36943 * 15 14 13 37 37 H 1.09002 * 109.48985 * 298.41362 * 15 14 13 38 38 H 0.96708 * 116.99764 * 180.02562 * 20 18 17 39 39 H 1.09007 * 110.51170 * 359.97438 * 21 17 16 40 40 H 1.08994 * 110.51601 * 122.70866 * 21 17 16 41 41 H 1.08993 * 110.37603 * 142.80597 * 22 21 17 42 42 H 1.09000 * 110.37242 * 265.14494 * 22 21 17 43 43 H 1.08998 * 110.42454 * 281.77433 * 24 23 22 44 44 H 1.09007 * 110.48667 * 159.32724 * 24 23 22 45 45 H 1.08997 * 109.47347 * 299.31758 * 25 16 15 46 46 H 1.09002 * 109.50396 * 179.27890 * 25 16 15 47 47 H 1.09002 * 109.48806 * 303.15815 * 26 13 12 48 48 H 1.09003 * 109.48675 * 63.21848 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0021 11 6 1.9792 -5.3243 -0.0017 12 6 3.1512 -6.3078 -0.0024 13 7 2.6361 -7.6834 -0.0026 14 6 3.7167 -8.6506 0.2350 15 6 3.1284 -10.0617 0.3065 16 7 2.4245 -10.3606 -0.9484 17 6 1.9092 -11.7363 -0.9481 18 6 3.0373 -12.7213 -0.7791 19 8 2.8621 -13.7385 -0.1512 20 8 4.2366 -12.4683 -1.3262 21 6 1.1308 -12.0233 -2.2515 22 6 -0.3013 -12.3457 -1.7703 23 8 -0.4138 -11.6959 -0.4854 24 6 0.8581 -11.9205 0.1689 25 6 1.3441 -9.3933 -1.1862 26 6 1.9324 -7.9822 -1.2577 27 1 -0.4850 0.8400 -0.0004 28 1 3.1250 -3.7318 0.8875 29 1 3.1238 -3.7310 -0.8924 30 1 1.3697 -5.4842 -0.8911 31 1 1.3715 -5.4845 0.8888 32 1 3.7604 -6.1477 0.8872 33 1 3.7593 -6.1477 -0.8928 34 1 4.2144 -8.4160 1.1760 35 1 4.4377 -8.5980 -0.5810 36 1 3.9317 -10.7836 0.4538 37 1 2.4281 -10.1219 1.1396 38 1 4.9291 -13.1298 -1.1911 39 1 1.1278 -11.1442 -2.8960 40 1 1.5603 -12.8789 -2.7724 41 1 -1.0357 -11.9402 -2.4661 42 1 -0.4324 -13.4225 -1.6637 43 1 0.9053 -12.9323 0.5715 44 1 1.0141 -11.1882 0.9612 45 1 0.6232 -9.4458 -0.3704 46 1 0.8462 -9.6278 -2.1271 47 1 1.1291 -7.2603 -1.4050 48 1 2.6331 -7.9221 -2.0906 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601075708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:49 Heat of formation + Delta-G solvation = -116.521299 kcal Electronic energy + Delta-G solvation = -28620.270750 eV Core-core repulsion = 24608.719474 eV Total energy + Delta-G solvation = -4011.551276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.78371 -39.78097 -38.71146 -36.60621 -35.98953 -33.18984 -32.41092 -31.58004 -31.18749 -29.45995 -26.85510 -25.60288 -25.13912 -24.36022 -23.58791 -22.63251 -21.03078 -20.59496 -19.69974 -18.65551 -17.78415 -17.43822 -17.22222 -16.19997 -16.02670 -15.72785 -15.46148 -15.29301 -14.93303 -14.79377 -14.71950 -14.64557 -14.27225 -13.85196 -13.77055 -13.07712 -12.93873 -12.89931 -12.46426 -12.41074 -12.18415 -12.06059 -11.90107 -11.81414 -11.72193 -11.52255 -11.37744 -11.21642 -11.05701 -10.99728 -10.88755 -10.72529 -10.59394 -10.29565 -10.22203 -9.51325 -9.04278 -8.77192 -8.35419 -8.27503 -6.50568 -6.21109 -3.91047 1.57973 2.40104 3.11467 3.22338 3.23180 3.30020 3.46394 3.53866 3.86745 3.87844 4.11274 4.24324 4.42319 4.54329 4.59455 4.67513 4.80517 4.93978 5.00026 5.04601 5.08486 5.14756 5.17437 5.22921 5.27432 5.30250 5.35213 5.38104 5.40627 5.55369 5.62989 5.69546 5.75950 5.78595 5.84299 5.94415 5.97381 6.09692 6.14670 6.36551 6.42752 6.53435 6.61347 6.76824 7.02850 7.05661 7.39449 7.62129 8.38288 9.25131 10.87053 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.025781 B = 0.001907 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.792713 B =14679.490619 C =15342.949323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.070 3.930 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.516 4.516 8 H 0.072 0.928 9 S -0.132 6.132 10 C -0.112 4.112 11 C -0.093 4.093 12 C 0.062 3.938 13 N -0.539 5.539 14 C 0.061 3.939 15 C 0.050 3.950 16 N -0.511 5.511 17 C 0.088 3.912 18 C 0.503 3.497 19 O -0.513 6.513 20 O -0.493 6.493 21 C -0.141 4.141 22 C 0.042 3.958 23 O -0.358 6.358 24 C 0.023 3.977 25 C 0.053 3.947 26 C 0.054 3.946 27 H 0.267 0.733 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.034 0.966 34 H 0.081 0.919 35 H 0.044 0.956 36 H 0.076 0.924 37 H 0.050 0.950 38 H 0.408 0.592 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.102 0.898 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.105 0.895 45 H 0.060 0.940 46 H 0.085 0.915 47 H 0.091 0.909 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.941 -28.628 -3.946 29.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.664 4.664 8 H 0.090 0.910 9 S 0.096 5.904 10 C -0.261 4.261 11 C -0.132 4.132 12 C -0.067 4.067 13 N -0.264 5.264 14 C -0.067 4.067 15 C -0.078 4.078 16 N -0.236 5.236 17 C -0.005 4.005 18 C 0.344 3.656 19 O -0.401 6.401 20 O -0.303 6.303 21 C -0.179 4.179 22 C -0.035 4.035 23 O -0.276 6.276 24 C -0.055 4.055 25 C -0.074 4.074 26 C -0.074 4.074 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.266 0.734 39 H 0.124 0.876 40 H 0.104 0.896 41 H 0.121 0.879 42 H 0.084 0.916 43 H 0.103 0.897 44 H 0.123 0.877 45 H 0.078 0.922 46 H 0.103 0.897 47 H 0.109 0.891 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.125 -28.560 -3.748 29.099 hybrid contribution 2.673 0.696 -0.027 2.762 sum 6.798 -27.864 -3.775 28.929 Atomic orbital electron populations 1.70023 1.05902 1.27288 1.47313 1.25017 0.95082 0.99074 0.94672 0.86171 0.79447 0.81603 0.78334 1.20302 1.20767 1.19711 1.22689 0.94498 0.90834 1.58369 0.91010 1.84634 1.09572 0.99375 1.96837 1.23227 1.02823 0.97422 1.02673 1.21276 0.96944 0.91863 1.03118 1.22164 0.97148 0.86644 1.00756 1.62160 1.26889 1.02782 1.34595 1.22066 0.92864 0.90352 1.01426 1.22316 0.97879 0.97412 0.90160 1.62440 1.27064 0.99137 1.34987 1.22245 0.90552 0.89314 0.98347 1.22796 0.82944 0.85373 0.74505 1.90747 1.82746 1.27765 1.38793 1.84674 1.21604 1.52612 1.71431 1.23130 0.94866 1.04361 0.95560 1.23517 0.96116 0.98074 0.85755 1.89282 1.32878 1.75948 1.29529 1.24166 0.82419 1.03826 0.95123 1.22331 0.92205 0.90502 1.02336 1.22238 0.98949 0.95575 0.90615 0.92330 0.92187 0.92383 0.91666 0.90793 0.90820 0.94800 0.90063 0.93786 0.90563 0.93225 0.73407 0.87577 0.89615 0.87938 0.91639 0.89692 0.87692 0.92209 0.89714 0.89078 0.93957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.09 13.22 55.49 0.73 -25.35 16 2 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 3 Si 0.92 21.60 29.55 -169.99 -5.02 16.57 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.52 -14.84 9.50 30.94 0.29 -14.55 16 8 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.13 -3.48 21.44 -107.50 -2.30 -5.78 16 10 C -0.11 -2.25 5.67 37.16 0.21 -2.04 16 11 C -0.09 -1.51 5.15 -26.74 -0.14 -1.64 16 12 C 0.06 0.81 4.96 -3.83 -0.02 0.79 16 13 N -0.54 -6.34 4.71 -234.47 -1.10 -7.44 16 14 C 0.06 0.61 5.61 -3.77 -0.02 0.59 16 15 C 0.05 0.45 5.04 -3.77 -0.02 0.43 16 16 N -0.51 -4.55 4.37 -218.34 -0.95 -5.50 16 17 C 0.09 0.72 0.73 -131.19 -0.10 0.62 16 18 C 0.50 4.24 5.79 36.01 0.21 4.45 16 19 O -0.51 -5.45 16.35 -18.75 -0.31 -5.75 16 20 O -0.49 -3.25 12.56 -39.24 -0.49 -3.74 16 21 C -0.14 -0.93 5.85 -25.17 -0.15 -1.08 16 22 C 0.04 0.28 7.63 37.93 0.29 0.57 16 23 O -0.36 -3.44 10.65 -35.23 -0.38 -3.82 16 24 C 0.02 0.21 5.76 37.93 0.22 0.43 16 25 C 0.05 0.51 4.58 -3.77 -0.02 0.49 16 26 C 0.05 0.60 5.41 -3.77 -0.02 0.58 16 27 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 29 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 30 H 0.06 1.06 6.49 -51.93 -0.34 0.72 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.07 0.94 8.03 -51.93 -0.42 0.52 16 33 H 0.03 0.44 8.12 -51.92 -0.42 0.02 16 34 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 35 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.63 6.59 -51.93 -0.34 0.29 16 37 H 0.05 0.47 6.27 -51.93 -0.33 0.14 16 38 H 0.41 0.93 9.10 45.56 0.41 1.34 16 39 H 0.11 0.67 6.07 -51.92 -0.32 0.36 16 40 H 0.09 0.49 7.73 -51.93 -0.40 0.09 16 41 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.79 6.83 -51.93 -0.35 0.44 16 44 H 0.11 0.96 5.71 -51.93 -0.30 0.66 16 45 H 0.06 0.65 6.66 -51.93 -0.35 0.30 16 46 H 0.08 0.71 5.94 -51.93 -0.31 0.40 16 47 H 0.09 1.06 6.34 -51.93 -0.33 0.74 16 48 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 382.38 15.07 5.76 5.76 Total: -1.00 -33.81 382.38 -10.12 -43.93 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -6.70 Total: -0.41 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 0.65 Total: -8.46 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: -1.33 Total: -38.30 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -1.17 Total: -13.32 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -2.30 Total: -5.78 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.81 -10.12 -43.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601075708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.592 kcal (2) G-P(sol) polarization free energy of solvation -33.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds