Wall clock time and date at job start Wed Apr 1 2020 03:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86799 * 119.99973 * 2 1 4 4 H 1.48502 * 109.46835 * 269.99918 * 3 2 1 5 5 H 1.48497 * 109.47269 * 30.00316 * 3 2 1 6 6 H 1.48504 * 109.46746 * 150.00376 * 3 2 1 7 7 C 1.38801 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99761 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00169 * 359.97438 * 7 2 1 10 10 C 1.81006 * 100.00122 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47299 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47195 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.47204 * 180.02562 * 12 11 10 14 14 C 1.46955 * 111.00233 * 190.00090 * 13 12 11 15 15 C 1.53049 * 109.36962 * 176.80960 * 14 13 12 16 16 N 1.46956 * 109.37889 * 58.38792 * 15 14 13 17 17 C 1.46901 * 110.99929 * 176.82469 * 16 15 14 18 18 C 1.50707 * 110.45723 * 300.70354 * 17 16 15 19 19 O 1.20823 * 120.00024 * 145.00187 * 18 17 16 20 20 O 1.34225 * 119.99626 * 325.00030 * 18 17 16 21 21 C 1.54502 * 110.51481 * 178.09859 * 17 16 15 22 22 C 1.54479 * 104.06727 * 241.35684 * 21 17 16 23 23 O 1.44424 * 104.79905 * 23.97478 * 22 21 17 24 24 C 1.44787 * 105.29600 * 319.45400 * 23 22 21 25 25 C 1.46957 * 110.88202 * 300.71439 * 16 15 14 26 26 C 1.46955 * 111.00423 * 66.20027 * 13 12 11 27 27 H 0.96999 * 120.00241 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46735 * 60.00086 * 10 9 7 29 29 H 1.08998 * 109.47307 * 300.00791 * 10 9 7 30 30 H 1.09002 * 109.46769 * 59.99999 * 11 10 9 31 31 H 1.08998 * 109.47233 * 300.00423 * 11 10 9 32 32 H 1.08998 * 109.46965 * 60.00143 * 12 11 10 33 33 H 1.09007 * 109.47084 * 300.00231 * 12 11 10 34 34 H 1.09005 * 109.49150 * 56.83886 * 14 13 12 35 35 H 1.09006 * 109.48712 * 296.78139 * 14 13 12 36 36 H 1.09002 * 109.49200 * 178.36943 * 15 14 13 37 37 H 1.09002 * 109.48985 * 298.41362 * 15 14 13 38 38 H 0.96708 * 116.99764 * 180.02562 * 20 18 17 39 39 H 1.09007 * 110.51170 * 359.97438 * 21 17 16 40 40 H 1.08994 * 110.51601 * 122.70866 * 21 17 16 41 41 H 1.08993 * 110.37603 * 142.80597 * 22 21 17 42 42 H 1.09000 * 110.37242 * 265.14494 * 22 21 17 43 43 H 1.08998 * 110.42454 * 281.77433 * 24 23 22 44 44 H 1.09007 * 110.48667 * 159.32724 * 24 23 22 45 45 H 1.08997 * 109.47347 * 299.31758 * 25 16 15 46 46 H 1.09002 * 109.50396 * 179.27890 * 25 16 15 47 47 H 1.09002 * 109.48806 * 303.15815 * 26 13 12 48 48 H 1.09003 * 109.48675 * 63.21848 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0021 11 6 1.9792 -5.3243 -0.0017 12 6 3.1512 -6.3078 -0.0024 13 7 2.6361 -7.6834 -0.0026 14 6 3.7167 -8.6506 0.2350 15 6 3.1284 -10.0617 0.3065 16 7 2.4245 -10.3606 -0.9484 17 6 1.9092 -11.7363 -0.9481 18 6 3.0373 -12.7213 -0.7791 19 8 2.8621 -13.7385 -0.1512 20 8 4.2366 -12.4683 -1.3262 21 6 1.1308 -12.0233 -2.2515 22 6 -0.3013 -12.3457 -1.7703 23 8 -0.4138 -11.6959 -0.4854 24 6 0.8581 -11.9205 0.1689 25 6 1.3441 -9.3933 -1.1862 26 6 1.9324 -7.9822 -1.2577 27 1 -0.4850 0.8400 -0.0004 28 1 3.1250 -3.7318 0.8875 29 1 3.1238 -3.7310 -0.8924 30 1 1.3697 -5.4842 -0.8911 31 1 1.3715 -5.4845 0.8888 32 1 3.7604 -6.1477 0.8872 33 1 3.7593 -6.1477 -0.8928 34 1 4.2144 -8.4160 1.1760 35 1 4.4377 -8.5980 -0.5810 36 1 3.9317 -10.7836 0.4538 37 1 2.4281 -10.1219 1.1396 38 1 4.9291 -13.1298 -1.1911 39 1 1.1278 -11.1442 -2.8960 40 1 1.5603 -12.8789 -2.7724 41 1 -1.0357 -11.9402 -2.4661 42 1 -0.4324 -13.4225 -1.6637 43 1 0.9053 -12.9323 0.5715 44 1 1.0141 -11.1882 0.9612 45 1 0.6232 -9.4458 -0.3704 46 1 0.8462 -9.6278 -2.1271 47 1 1.1291 -7.2603 -1.4050 48 1 2.6331 -7.9221 -2.0906 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601075708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:47 Heat of formation + Delta-G solvation = -142.109524 kcal Electronic energy + Delta-G solvation = -28621.380339 eV Core-core repulsion = 24608.719474 eV Total energy + Delta-G solvation = -4012.660865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.44039 -40.47430 -39.49779 -37.24519 -36.85105 -34.61126 -34.26328 -32.37668 -31.97814 -30.17995 -28.04633 -27.53494 -25.89271 -25.30487 -24.47650 -23.27635 -22.13774 -21.44217 -20.45022 -19.54462 -19.29142 -18.42783 -17.86416 -17.00309 -16.88556 -16.68313 -16.53940 -16.41003 -16.29409 -15.84511 -15.66302 -15.58738 -15.41312 -15.04562 -14.61046 -14.55103 -13.83690 -13.68912 -13.47119 -13.27948 -13.25521 -13.08407 -12.92643 -12.86645 -12.70429 -12.65287 -12.53179 -12.45378 -12.37992 -12.14983 -12.08650 -11.77534 -11.67889 -11.47328 -11.24916 -11.12457 -10.92774 -10.29551 -9.52185 -9.25935 -8.65026 -8.36148 -6.12165 0.93950 1.32167 1.40056 1.49440 1.76123 1.84534 2.29530 2.43534 2.85896 2.88864 2.97920 3.28403 3.34385 3.46138 3.76597 3.90214 3.97268 4.05050 4.07281 4.10482 4.16206 4.29859 4.31604 4.35321 4.40635 4.43720 4.53065 4.54899 4.57427 4.66380 4.72575 4.76146 4.77677 4.83930 4.88381 4.96246 5.04538 5.05332 5.21814 5.34370 5.40824 5.40936 5.54440 5.71905 5.80339 6.08553 6.13852 6.19282 6.89467 7.05983 8.73210 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.025781 B = 0.001907 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.792713 B =14679.490619 C =15342.949323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.014 3.986 3 Si 0.994 3.006 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.537 4.537 8 H 0.073 0.927 9 S -0.199 6.199 10 C -0.086 4.086 11 C -0.081 4.081 12 C 0.074 3.926 13 N -0.548 5.548 14 C 0.064 3.936 15 C 0.052 3.948 16 N -0.508 5.508 17 C 0.086 3.914 18 C 0.510 3.490 19 O -0.538 6.538 20 O -0.492 6.492 21 C -0.137 4.137 22 C 0.038 3.962 23 O -0.379 6.379 24 C 0.026 3.974 25 C 0.061 3.939 26 C 0.055 3.945 27 H 0.271 0.729 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.038 0.962 34 H 0.090 0.910 35 H 0.044 0.956 36 H 0.087 0.913 37 H 0.044 0.956 38 H 0.427 0.573 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.119 0.881 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.098 0.902 45 H 0.045 0.955 46 H 0.098 0.902 47 H 0.080 0.920 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.619 -29.234 -4.639 30.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.191 4.191 3 Si 0.816 3.184 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.029 5.971 10 C -0.236 4.236 11 C -0.120 4.120 12 C -0.056 4.056 13 N -0.273 5.273 14 C -0.064 4.064 15 C -0.076 4.076 16 N -0.234 5.234 17 C -0.006 4.006 18 C 0.352 3.648 19 O -0.428 6.428 20 O -0.304 6.304 21 C -0.175 4.175 22 C -0.038 4.038 23 O -0.298 6.298 24 C -0.052 4.052 25 C -0.066 4.066 26 C -0.073 4.073 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.056 0.944 34 H 0.109 0.891 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.062 0.938 38 H 0.288 0.712 39 H 0.129 0.871 40 H 0.116 0.884 41 H 0.137 0.863 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.116 0.884 45 H 0.063 0.937 46 H 0.116 0.884 47 H 0.098 0.902 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.826 -29.190 -4.451 30.097 hybrid contribution 2.173 0.773 0.176 2.313 sum 7.999 -28.417 -4.276 29.829 Atomic orbital electron populations 1.70159 1.07681 1.28510 1.48049 1.26083 0.96052 1.03148 0.93837 0.85011 0.78168 0.76370 0.78827 1.19255 1.19973 1.18711 1.23037 0.94716 0.92005 1.58727 0.90922 1.84661 1.14192 1.01193 1.97022 1.23145 1.00041 0.97529 1.02850 1.21146 0.98002 0.90263 1.02566 1.21950 0.95507 0.86752 1.01356 1.62116 1.27722 1.02381 1.35101 1.22102 0.92263 0.90176 1.01878 1.22303 0.98049 0.97140 0.90079 1.62454 1.26707 0.99376 1.34838 1.22271 0.90614 0.88796 0.98937 1.22706 0.83330 0.84808 0.73945 1.90745 1.83223 1.28819 1.40009 1.84627 1.21521 1.53416 1.70806 1.23153 0.94475 1.05057 0.94798 1.23708 0.96704 0.98479 0.84903 1.89259 1.33237 1.76454 1.30849 1.24077 0.82696 1.03151 0.95316 1.22225 0.91975 0.89914 1.02469 1.22221 0.98558 0.96201 0.90305 0.91997 0.91928 0.92022 0.91841 0.91803 0.90058 0.94359 0.89146 0.93732 0.89525 0.93806 0.71164 0.87093 0.88438 0.86337 0.90982 0.90344 0.88406 0.93688 0.88400 0.90167 0.93903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.13 13.22 21.65 0.29 -54.84 16 2 C 0.01 0.78 5.49 84.86 0.47 1.25 16 3 Si 0.99 44.05 29.55 68.60 2.03 46.08 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 5 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 7 C -0.54 -31.17 9.50 67.95 0.65 -30.53 16 8 H 0.07 4.05 7.80 -2.91 -0.02 4.03 16 9 S -0.20 -10.68 21.44 -56.49 -1.21 -11.89 16 10 C -0.09 -3.43 5.67 71.98 0.41 -3.03 16 11 C -0.08 -2.57 5.15 30.59 0.16 -2.42 16 12 C 0.07 1.82 4.96 86.30 0.43 2.25 16 13 N -0.55 -12.18 4.71 -895.73 -4.22 -16.40 16 14 C 0.06 1.15 5.61 86.31 0.48 1.63 16 15 C 0.05 0.86 5.04 86.31 0.43 1.29 16 16 N -0.51 -8.28 4.37 -844.70 -3.69 -11.98 16 17 C 0.09 1.29 0.73 3.80 0.00 1.30 16 18 C 0.51 7.79 5.79 71.24 0.41 8.20 16 19 O -0.54 -10.86 16.35 21.97 0.36 -10.50 16 20 O -0.49 -5.36 12.56 -51.37 -0.65 -6.00 16 21 C -0.14 -1.56 5.85 31.61 0.18 -1.37 16 22 C 0.04 0.46 7.63 72.48 0.55 1.01 16 23 O -0.38 -7.09 10.65 -148.98 -1.59 -8.67 16 24 C 0.03 0.46 5.76 72.48 0.42 0.87 16 25 C 0.06 1.10 4.58 86.31 0.39 1.50 16 26 C 0.06 1.16 5.41 86.31 0.47 1.62 16 27 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 28 H 0.06 2.45 8.14 -2.40 -0.02 2.44 16 29 H 0.06 2.41 8.14 -2.40 -0.02 2.39 16 30 H 0.06 2.05 6.49 -2.39 -0.02 2.03 16 31 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.08 1.91 8.03 -2.39 -0.02 1.89 16 33 H 0.04 0.93 8.12 -2.38 -0.02 0.91 16 34 H 0.09 1.46 8.07 -2.38 -0.02 1.44 16 35 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.09 1.26 6.59 -2.39 -0.02 1.25 16 37 H 0.04 0.79 6.27 -2.39 -0.01 0.77 16 38 H 0.43 0.94 9.10 -74.05 -0.67 0.27 16 39 H 0.11 1.16 6.07 -2.38 -0.01 1.14 16 40 H 0.10 0.89 7.73 -2.39 -0.02 0.87 16 41 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.08 1.46 6.83 -2.39 -0.02 1.44 16 44 H 0.10 1.80 5.71 -2.38 -0.01 1.79 16 45 H 0.04 0.96 6.66 -2.39 -0.02 0.94 16 46 H 0.10 1.49 5.94 -2.39 -0.01 1.48 16 47 H 0.08 1.84 6.34 -2.39 -0.02 1.83 16 48 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -72.86 382.38 -2.92 -75.78 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.31 Total: 14.85 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: 5.46 Total: -16.42 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -7.62 Total: -83.21 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -1.87 Total: -25.18 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: -10.68 SS G_CDS: -1.21 Total: -11.89 kcal Total: -72.86 -2.92 -75.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601075708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.331 kcal (2) G-P(sol) polarization free energy of solvation -72.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds