Wall clock time and date at job start Wed Apr 1 2020 03:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 119.99952 * 2 1 4 4 H 1.48500 * 109.47101 * 269.99763 * 3 2 1 5 5 H 1.48497 * 109.47327 * 29.99350 * 3 2 1 6 6 H 1.48494 * 109.47573 * 149.99723 * 3 2 1 7 7 C 1.38797 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00218 * 0.02562 * 7 2 1 9 9 S 1.76201 * 119.99985 * 180.02562 * 7 2 1 10 10 C 1.80998 * 99.99917 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47009 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99968 * 0.02562 * 11 10 9 13 13 N 1.34785 * 119.99965 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99855 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46872 * 180.02562 * 14 13 11 16 16 H 1.08998 * 109.50833 * 59.90866 * 15 14 13 17 17 C 1.53102 * 109.50452 * 179.97438 * 15 14 13 18 18 N 1.47014 * 109.25774 * 176.78133 * 17 15 14 19 19 C 1.46896 * 111.00048 * 177.60432 * 18 17 15 20 20 C 1.53001 * 109.47286 * 293.86998 * 19 18 17 21 21 H 1.09003 * 110.56458 * 53.88440 * 20 19 18 22 22 C 1.54507 * 110.51302 * 176.56914 * 20 19 18 23 23 C 1.54478 * 104.06470 * 118.64452 * 22 20 19 24 24 O 1.44420 * 104.80430 * 23.97777 * 23 22 20 25 25 C 1.44426 * 105.27351 * 319.48922 * 24 23 22 26 26 C 1.47014 * 110.75348 * 301.38734 * 18 17 15 27 27 C 1.53089 * 109.26086 * 58.61221 * 26 18 17 28 28 O 1.43013 * 109.50586 * 299.77821 * 15 14 13 29 29 H 0.96998 * 120.00282 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46908 * 60.00679 * 10 9 7 31 31 H 1.09002 * 109.47712 * 300.00253 * 10 9 7 32 32 H 0.96996 * 119.99455 * 359.97438 * 13 11 10 33 33 H 1.08997 * 109.47734 * 59.99485 * 14 13 11 34 34 H 1.09000 * 109.46810 * 299.99368 * 14 13 11 35 35 H 1.08990 * 109.50887 * 56.84535 * 17 15 14 36 36 H 1.09002 * 109.53759 * 296.73367 * 17 15 14 37 37 H 1.09000 * 109.46999 * 173.86877 * 19 18 17 38 38 H 1.08999 * 109.46921 * 53.87157 * 19 18 17 39 39 H 1.09004 * 110.50986 * 237.28923 * 22 20 19 40 40 H 1.08999 * 110.50877 * 359.85856 * 22 20 19 41 41 H 1.08998 * 110.37122 * 142.81382 * 23 22 20 42 42 H 1.09003 * 110.37433 * 265.03657 * 23 22 20 43 43 H 1.09002 * 110.37461 * 281.67607 * 25 24 23 44 44 H 1.09006 * 110.37143 * 159.34184 * 25 24 23 45 45 H 1.08998 * 109.50701 * 178.55597 * 26 18 17 46 46 H 1.09010 * 109.50123 * 298.67615 * 26 18 17 47 47 H 1.09003 * 109.50515 * 183.22423 * 27 26 18 48 48 H 1.08998 * 109.50883 * 63.08941 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4704 -2.1374 0.0005 9 16 3.7723 -1.2019 0.0012 10 6 4.0867 -2.9844 0.0009 11 6 5.5731 -3.2324 0.0008 12 8 6.3441 -2.2961 0.0014 13 7 6.0458 -4.4946 0.0001 14 6 7.4909 -4.7356 0.0006 15 6 7.7566 -6.2423 -0.0011 16 1 7.3129 -6.6892 -0.8908 17 6 9.2666 -6.4951 -0.0013 18 7 9.5160 -7.9420 0.0751 19 6 10.9550 -8.2317 0.0202 20 6 11.5017 -7.8420 -1.3547 21 1 11.2527 -6.8064 -1.5862 22 6 13.0307 -8.0568 -1.4102 23 6 13.2221 -9.1069 -2.5268 24 8 12.0503 -8.9764 -3.3609 25 6 10.9501 -8.7879 -2.4444 26 6 8.9096 -8.5119 1.2870 27 6 7.4033 -8.2389 1.2743 28 8 7.1796 -6.8303 1.1680 29 1 -0.4850 0.8400 -0.0004 30 1 3.6442 -3.4312 -0.8894 31 1 3.6434 -3.4318 0.8906 32 1 5.4292 -5.2433 0.0000 33 1 7.9335 -4.2891 0.8910 34 1 7.9341 -4.2879 -0.8890 35 1 9.7183 -6.0021 0.8594 36 1 9.7025 -6.0986 -0.9182 37 1 11.1179 -9.2964 0.1875 38 1 11.4705 -7.6596 0.7916 39 1 13.5378 -7.1272 -1.6691 40 1 13.3976 -8.4382 -0.4573 41 1 14.1228 -8.8902 -3.1012 42 1 13.2767 -10.1086 -2.1004 43 1 10.6542 -9.7408 -2.0056 44 1 10.1053 -8.3260 -2.9556 45 1 9.0844 -9.5875 1.3102 46 1 9.3557 -8.0510 2.1684 47 1 6.9585 -8.6093 2.1979 48 1 6.9489 -8.7445 0.4223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666685607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:58 Heat of formation + Delta-G solvation = -123.563419 kcal Electronic energy + Delta-G solvation = -27570.777416 eV Core-core repulsion = 23558.920771 eV Total energy + Delta-G solvation = -4011.856646 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.57215 -39.67803 -38.98623 -36.52282 -34.79467 -33.02970 -32.41635 -32.02741 -30.11250 -29.50889 -28.10896 -26.17028 -25.54684 -24.70208 -23.25222 -22.53243 -21.06585 -20.73039 -20.20246 -17.92916 -17.29718 -17.01554 -16.60392 -16.41899 -16.13739 -16.08611 -15.78122 -15.42219 -15.12134 -15.04659 -14.94262 -14.48860 -14.31813 -14.04200 -13.73366 -13.29657 -13.21831 -13.17825 -12.79628 -12.70894 -12.55252 -12.08327 -11.95604 -11.83307 -11.72808 -11.61648 -11.46690 -11.24630 -11.11660 -10.98781 -10.81863 -10.57164 -10.21944 -10.06494 -9.83346 -9.49947 -9.00226 -8.96574 -8.91938 -8.47188 -6.88872 -6.26556 -3.97976 2.76106 3.00946 3.08031 3.30814 3.34429 3.39403 3.52651 3.54814 3.70338 4.07924 4.15607 4.35197 4.36296 4.40924 4.45442 4.50426 4.61273 4.68210 4.75419 4.78143 4.79164 4.85327 4.92105 5.06663 5.08161 5.12456 5.13418 5.21066 5.23407 5.26450 5.30380 5.36620 5.38599 5.42812 5.50568 5.57403 5.64586 5.75594 5.81958 6.06289 6.32321 6.34852 6.40462 6.53007 6.77915 7.65906 7.96568 8.44325 8.52576 9.19687 10.82673 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022252 B = 0.001779 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.019837 B =15735.959793 C =16375.784545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.123 4.123 11 C 0.531 3.469 12 O -0.523 6.523 13 N -0.730 5.730 14 C 0.132 3.868 15 C 0.084 3.916 16 H 0.076 0.924 17 C 0.023 3.977 18 N -0.536 5.536 19 C 0.065 3.935 20 C -0.121 4.121 21 H 0.087 0.913 22 C -0.152 4.152 23 C 0.045 3.955 24 O -0.379 6.379 25 C 0.061 3.939 26 C 0.017 3.983 27 C 0.064 3.936 28 O -0.374 6.374 29 H 0.270 0.730 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.403 0.597 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.049 0.951 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.041 0.959 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.100 0.900 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.711 -23.983 0.076 35.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.274 4.274 11 C 0.317 3.683 12 O -0.397 6.397 13 N -0.384 5.384 14 C 0.007 3.993 15 C 0.025 3.975 16 H 0.094 0.906 17 C -0.105 4.105 18 N -0.260 5.260 19 C -0.063 4.063 20 C -0.140 4.140 21 H 0.105 0.895 22 C -0.190 4.190 23 C -0.032 4.032 24 O -0.298 6.298 25 C -0.016 4.016 26 C -0.111 4.111 27 C -0.013 4.013 28 O -0.293 6.293 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.238 0.762 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.112 0.888 45 H 0.105 0.895 46 H 0.063 0.937 47 H 0.118 0.882 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 26.493 -22.442 -0.416 34.723 hybrid contribution -0.485 -0.532 0.836 1.103 sum 26.008 -22.974 0.419 34.704 Atomic orbital electron populations 1.69940 1.05906 1.27729 1.48159 1.24714 0.94452 0.98957 0.93210 0.86729 0.81901 0.83276 0.79913 1.19221 1.19976 1.15927 1.22327 0.88300 0.97544 1.58668 0.89373 1.84769 1.09246 1.00185 1.97429 1.23268 0.93982 1.04250 1.05869 1.20274 0.90620 0.82181 0.75183 1.90695 1.58793 1.42237 1.48023 1.45786 1.07007 1.08207 1.77430 1.21236 0.82774 0.92191 1.03113 1.22392 0.92214 0.93536 0.89322 0.90609 1.22755 0.96593 0.88448 1.02738 1.62181 1.12995 1.12592 1.38274 1.22191 0.87027 1.01264 0.95806 1.22595 0.94548 1.01486 0.95400 0.89497 1.22985 0.95634 1.00524 0.99857 1.23382 0.89895 0.97968 0.91965 1.89151 1.16740 1.93767 1.30138 1.23380 0.90153 0.98163 0.89873 1.22813 0.96390 1.00702 0.91194 1.22660 0.93770 0.82127 1.02720 1.88082 1.76324 1.21534 1.43377 0.91973 0.88488 0.88391 0.76231 0.90916 0.89998 0.93285 0.88995 0.90254 0.94095 0.90390 0.90407 0.89181 0.92369 0.91994 0.88842 0.89543 0.93726 0.88166 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.74 13.97 55.49 0.78 -25.97 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.96 27.74 -169.99 -4.72 17.25 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 7 C -0.52 -15.15 10.04 30.94 0.31 -14.84 16 8 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 9 S -0.14 -3.66 18.55 -107.50 -1.99 -5.66 16 10 C -0.12 -2.42 6.16 36.01 0.22 -2.20 16 11 C 0.53 9.62 7.85 -10.98 -0.09 9.53 16 12 O -0.52 -11.39 15.86 5.56 0.09 -11.30 16 13 N -0.73 -9.66 5.45 -60.29 -0.33 -9.99 16 14 C 0.13 1.47 5.37 -4.04 -0.02 1.44 16 15 C 0.08 0.72 2.89 -26.68 -0.08 0.64 16 16 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 17 C 0.02 0.17 4.73 -3.71 -0.02 0.15 16 18 N -0.54 -3.34 4.59 -234.31 -1.07 -4.41 16 19 C 0.06 0.33 4.10 -3.83 -0.02 0.32 16 20 C -0.12 -0.67 3.06 -89.05 -0.27 -0.94 16 21 H 0.09 0.53 6.33 -51.93 -0.33 0.20 16 22 C -0.15 -0.71 6.74 -25.16 -0.17 -0.88 16 23 C 0.04 0.25 7.63 37.93 0.29 0.54 16 24 O -0.38 -3.31 11.65 -35.23 -0.41 -3.72 16 25 C 0.06 0.41 7.05 37.93 0.27 0.68 16 26 C 0.02 0.10 5.65 -3.72 -0.02 0.08 16 27 C 0.06 0.43 7.01 37.20 0.26 0.69 16 28 O -0.37 -3.59 10.23 -35.23 -0.36 -3.95 16 29 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.10 1.77 8.14 -51.92 -0.42 1.34 16 31 H 0.10 1.81 8.14 -51.92 -0.42 1.39 16 32 H 0.40 4.46 8.35 -40.82 -0.34 4.12 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.59 6.28 -51.93 -0.33 0.27 16 37 H 0.08 0.35 7.90 -51.93 -0.41 -0.06 16 38 H 0.04 0.22 8.12 -51.93 -0.42 -0.21 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.27 7.73 -51.93 -0.40 -0.13 16 41 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 43 H 0.06 0.39 7.77 -51.93 -0.40 -0.01 16 44 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.09 0.38 8.09 -51.93 -0.42 -0.04 16 46 H 0.04 0.29 8.14 -51.92 -0.42 -0.13 16 47 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 395.51 15.07 5.96 5.96 Total: -1.00 -35.12 395.51 -9.61 -44.73 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -8.13 Total: -0.88 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 0.57 Total: -2.07 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: -0.63 Total: -40.37 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.68 Total: -18.97 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.72 Total: 17.25 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.12 -9.61 -44.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666685607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.830 kcal (2) G-P(sol) polarization free energy of solvation -35.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds