Wall clock time and date at job start Wed Apr 1 2020 03:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 119.99952 * 2 1 4 4 H 1.48500 * 109.47101 * 269.99763 * 3 2 1 5 5 H 1.48497 * 109.47327 * 29.99350 * 3 2 1 6 6 H 1.48494 * 109.47573 * 149.99723 * 3 2 1 7 7 C 1.38797 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00218 * 0.02562 * 7 2 1 9 9 S 1.76201 * 119.99985 * 180.02562 * 7 2 1 10 10 C 1.80998 * 99.99917 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47009 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99968 * 0.02562 * 11 10 9 13 13 N 1.34785 * 119.99965 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99855 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46872 * 180.02562 * 14 13 11 16 16 H 1.08998 * 109.50833 * 59.90866 * 15 14 13 17 17 C 1.53102 * 109.50452 * 179.97438 * 15 14 13 18 18 N 1.47014 * 109.25774 * 176.78133 * 17 15 14 19 19 C 1.46896 * 111.00048 * 177.60432 * 18 17 15 20 20 C 1.53001 * 109.47286 * 293.86998 * 19 18 17 21 21 H 1.09003 * 110.56458 * 53.88440 * 20 19 18 22 22 C 1.54507 * 110.51302 * 176.56914 * 20 19 18 23 23 C 1.54478 * 104.06470 * 118.64452 * 22 20 19 24 24 O 1.44420 * 104.80430 * 23.97777 * 23 22 20 25 25 C 1.44426 * 105.27351 * 319.48922 * 24 23 22 26 26 C 1.47014 * 110.75348 * 301.38734 * 18 17 15 27 27 C 1.53089 * 109.26086 * 58.61221 * 26 18 17 28 28 O 1.43013 * 109.50586 * 299.77821 * 15 14 13 29 29 H 0.96998 * 120.00282 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46908 * 60.00679 * 10 9 7 31 31 H 1.09002 * 109.47712 * 300.00253 * 10 9 7 32 32 H 0.96996 * 119.99455 * 359.97438 * 13 11 10 33 33 H 1.08997 * 109.47734 * 59.99485 * 14 13 11 34 34 H 1.09000 * 109.46810 * 299.99368 * 14 13 11 35 35 H 1.08990 * 109.50887 * 56.84535 * 17 15 14 36 36 H 1.09002 * 109.53759 * 296.73367 * 17 15 14 37 37 H 1.09000 * 109.46999 * 173.86877 * 19 18 17 38 38 H 1.08999 * 109.46921 * 53.87157 * 19 18 17 39 39 H 1.09004 * 110.50986 * 237.28923 * 22 20 19 40 40 H 1.08999 * 110.50877 * 359.85856 * 22 20 19 41 41 H 1.08998 * 110.37122 * 142.81382 * 23 22 20 42 42 H 1.09003 * 110.37433 * 265.03657 * 23 22 20 43 43 H 1.09002 * 110.37461 * 281.67607 * 25 24 23 44 44 H 1.09006 * 110.37143 * 159.34184 * 25 24 23 45 45 H 1.08998 * 109.50701 * 178.55597 * 26 18 17 46 46 H 1.09010 * 109.50123 * 298.67615 * 26 18 17 47 47 H 1.09003 * 109.50515 * 183.22423 * 27 26 18 48 48 H 1.08998 * 109.50883 * 63.08941 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4704 -2.1374 0.0005 9 16 3.7723 -1.2019 0.0012 10 6 4.0867 -2.9844 0.0009 11 6 5.5731 -3.2324 0.0008 12 8 6.3441 -2.2961 0.0014 13 7 6.0458 -4.4946 0.0001 14 6 7.4909 -4.7356 0.0006 15 6 7.7566 -6.2423 -0.0011 16 1 7.3129 -6.6892 -0.8908 17 6 9.2666 -6.4951 -0.0013 18 7 9.5160 -7.9420 0.0751 19 6 10.9550 -8.2317 0.0202 20 6 11.5017 -7.8420 -1.3547 21 1 11.2527 -6.8064 -1.5862 22 6 13.0307 -8.0568 -1.4102 23 6 13.2221 -9.1069 -2.5268 24 8 12.0503 -8.9764 -3.3609 25 6 10.9501 -8.7879 -2.4444 26 6 8.9096 -8.5119 1.2870 27 6 7.4033 -8.2389 1.2743 28 8 7.1796 -6.8303 1.1680 29 1 -0.4850 0.8400 -0.0004 30 1 3.6442 -3.4312 -0.8894 31 1 3.6434 -3.4318 0.8906 32 1 5.4292 -5.2433 0.0000 33 1 7.9335 -4.2891 0.8910 34 1 7.9341 -4.2879 -0.8890 35 1 9.7183 -6.0021 0.8594 36 1 9.7025 -6.0986 -0.9182 37 1 11.1179 -9.2964 0.1875 38 1 11.4705 -7.6596 0.7916 39 1 13.5378 -7.1272 -1.6691 40 1 13.3976 -8.4382 -0.4573 41 1 14.1228 -8.8902 -3.1012 42 1 13.2767 -10.1086 -2.1004 43 1 10.6542 -9.7408 -2.0056 44 1 10.1053 -8.3260 -2.9556 45 1 9.0844 -9.5875 1.3102 46 1 9.3557 -8.0510 2.1684 47 1 6.9585 -8.6093 2.1979 48 1 6.9489 -8.7445 0.4223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666685607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:57 Heat of formation + Delta-G solvation = -150.869901 kcal Electronic energy + Delta-G solvation = -27571.961514 eV Core-core repulsion = 23558.920771 eV Total energy + Delta-G solvation = -4013.040744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.19895 -40.55445 -39.97186 -37.12251 -35.89431 -34.66647 -33.52061 -32.95290 -30.93899 -30.45099 -28.73660 -27.87124 -26.89799 -25.20144 -23.76103 -23.19203 -21.96545 -21.41990 -20.99899 -19.89737 -18.08250 -17.76471 -17.63046 -17.41833 -17.08835 -16.83795 -16.66659 -16.45283 -16.35548 -15.93413 -15.82519 -15.51263 -15.23945 -14.91155 -14.88419 -14.52599 -14.46627 -14.31909 -13.70720 -13.46356 -13.35516 -13.24706 -13.01855 -12.98953 -12.66403 -12.51174 -12.39744 -12.24041 -12.10948 -11.94221 -11.86608 -11.64326 -11.28984 -11.16502 -11.05409 -10.72782 -10.63009 -10.53497 -10.16829 -9.43920 -8.99083 -8.50908 -6.21810 0.99021 1.32015 1.47184 1.55425 1.56619 2.16882 2.26093 2.63844 2.70601 2.76006 2.87205 3.10550 3.62748 3.71678 3.75211 3.83344 3.94071 3.97030 4.01192 4.04719 4.18245 4.23062 4.29439 4.33881 4.38635 4.44017 4.47813 4.50664 4.61329 4.65463 4.68099 4.70821 4.82278 4.84384 4.89344 4.91086 4.98459 5.02021 5.09455 5.22272 5.35572 5.71349 5.85962 5.87413 5.95722 6.12045 6.16460 6.44665 6.94127 7.17300 8.61467 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022252 B = 0.001779 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.019837 B =15735.959793 C =16375.784545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.045 3.955 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.237 1.237 7 C -0.530 4.530 8 H 0.062 0.938 9 S -0.174 6.174 10 C -0.111 4.111 11 C 0.536 3.464 12 O -0.564 6.564 13 N -0.707 5.707 14 C 0.131 3.869 15 C 0.093 3.907 16 H 0.084 0.916 17 C 0.028 3.972 18 N -0.538 5.538 19 C 0.070 3.930 20 C -0.117 4.117 21 H 0.079 0.921 22 C -0.147 4.147 23 C 0.039 3.961 24 O -0.410 6.410 25 C 0.060 3.940 26 C 0.019 3.981 27 C 0.060 3.940 28 O -0.397 6.397 29 H 0.277 0.723 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.417 0.583 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.041 0.959 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.042 0.958 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.085 0.915 45 H 0.105 0.895 46 H 0.038 0.962 47 H 0.111 0.889 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.437 -25.345 0.364 37.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.160 4.160 3 Si 0.737 3.263 4 H -0.186 1.186 5 H -0.183 1.183 6 H -0.161 1.161 7 C -0.677 4.677 8 H 0.080 0.920 9 S 0.052 5.948 10 C -0.262 4.262 11 C 0.321 3.679 12 O -0.442 6.442 13 N -0.360 5.360 14 C 0.006 3.994 15 C 0.035 3.965 16 H 0.102 0.898 17 C -0.101 4.101 18 N -0.263 5.263 19 C -0.058 4.058 20 C -0.136 4.136 21 H 0.098 0.902 22 C -0.186 4.186 23 C -0.038 4.038 24 O -0.329 6.329 25 C -0.016 4.016 26 C -0.109 4.109 27 C -0.016 4.016 28 O -0.316 6.316 29 H 0.086 0.914 30 H 0.133 0.867 31 H 0.130 0.870 32 H 0.253 0.747 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.059 0.941 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.061 0.939 39 H 0.096 0.904 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.104 0.896 45 H 0.123 0.877 46 H 0.056 0.944 47 H 0.129 0.871 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 28.220 -23.867 -0.124 36.959 hybrid contribution -0.991 -0.319 0.745 1.280 sum 27.228 -24.186 0.621 36.424 Atomic orbital electron populations 1.70017 1.07291 1.29017 1.49129 1.25571 0.95291 1.02273 0.92877 0.85856 0.80652 0.79546 0.80247 1.18620 1.18317 1.16108 1.22469 0.90269 0.96718 1.58285 0.91978 1.84678 1.06416 1.06102 1.97587 1.23260 0.95848 0.99648 1.07438 1.19934 0.89443 0.83216 0.75262 1.90684 1.59290 1.43762 1.50480 1.45588 1.08479 1.06877 1.75079 1.21380 0.80874 0.94300 1.02810 1.22254 0.93249 0.91520 0.89465 0.89835 1.22667 0.95408 0.89273 1.02752 1.62197 1.13825 1.11716 1.38537 1.22186 0.86210 1.01984 0.95412 1.22537 0.95143 1.00715 0.95227 0.90233 1.22970 0.94961 1.00337 1.00285 1.23563 0.89193 0.98903 0.92108 1.89116 1.18069 1.93978 1.31757 1.23406 0.89672 0.98619 0.89909 1.22826 0.95633 1.01720 0.90674 1.22838 0.94596 0.80649 1.03541 1.88042 1.76711 1.23218 1.43659 0.91369 0.86750 0.87020 0.74665 0.92110 0.89479 0.94087 0.88353 0.89041 0.93936 0.90432 0.88823 0.88571 0.91286 0.91512 0.89633 0.87667 0.94376 0.87056 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.15 13.97 21.65 0.30 -55.84 16 2 C 0.05 2.68 5.50 84.86 0.47 3.14 16 3 Si 0.92 45.33 27.74 68.60 1.90 47.24 16 4 H -0.26 -12.61 7.11 99.48 0.71 -11.91 16 5 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.24 -11.75 6.74 99.48 0.67 -11.07 16 7 C -0.53 -31.16 10.04 67.95 0.68 -30.48 16 8 H 0.06 3.85 8.03 -2.91 -0.02 3.82 16 9 S -0.17 -8.92 18.55 -56.49 -1.05 -9.96 16 10 C -0.11 -4.26 6.16 71.24 0.44 -3.83 16 11 C 0.54 18.79 7.85 87.66 0.69 19.48 16 12 O -0.56 -24.29 15.86 -3.03 -0.05 -24.34 16 13 N -0.71 -17.54 5.45 -463.05 -2.52 -20.06 16 14 C 0.13 2.73 5.37 86.38 0.46 3.20 16 15 C 0.09 1.44 2.89 30.63 0.09 1.53 16 16 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 17 C 0.03 0.35 4.73 86.32 0.41 0.76 16 18 N -0.54 -5.55 4.59 -895.23 -4.10 -9.66 16 19 C 0.07 0.55 4.10 86.30 0.35 0.90 16 20 C -0.12 -1.10 3.06 -9.78 -0.03 -1.13 16 21 H 0.08 0.87 6.33 -2.39 -0.02 0.85 16 22 C -0.15 -1.10 6.74 31.61 0.21 -0.89 16 23 C 0.04 0.38 7.63 72.48 0.55 0.93 16 24 O -0.41 -6.83 11.65 -148.98 -1.74 -8.57 16 25 C 0.06 0.75 7.05 72.48 0.51 1.26 16 26 C 0.02 0.18 5.65 86.31 0.49 0.67 16 27 C 0.06 0.68 7.01 72.01 0.50 1.18 16 28 O -0.40 -6.88 10.23 -148.98 -1.52 -8.40 16 29 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 30 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 31 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 32 H 0.42 8.30 8.35 -92.71 -0.77 7.52 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.10 1.12 6.28 -2.39 -0.01 1.10 16 37 H 0.09 0.54 7.90 -2.39 -0.02 0.52 16 38 H 0.04 0.35 8.12 -2.39 -0.02 0.33 16 39 H 0.08 0.59 8.14 -2.38 -0.02 0.58 16 40 H 0.09 0.41 7.73 -2.39 -0.02 0.39 16 41 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.07 0.74 7.77 -2.39 -0.02 0.72 16 44 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 45 H 0.11 0.60 8.09 -2.39 -0.02 0.58 16 46 H 0.04 0.42 8.14 -2.38 -0.02 0.40 16 47 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -75.74 395.51 -2.81 -78.56 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.14 Total: 14.32 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 5.83 Total: -3.27 kcal Atomic # 7 Polarization: -79.24 SS G_CDS: -6.33 Total: -85.57 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -3.31 Total: -41.31 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.90 Total: 47.24 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.05 Total: -9.96 kcal Total: -75.74 -2.81 -78.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666685607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.314 kcal (2) G-P(sol) polarization free energy of solvation -75.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds