Wall clock time and date at job start Wed Apr 1 2020 02:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99978 * 2 1 4 4 H 1.48503 * 109.47102 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47215 * 299.99628 * 3 2 1 6 6 H 1.48495 * 109.47462 * 60.00177 * 3 2 1 7 7 C 1.38815 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00008 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99722 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99904 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47405 * 179.97438 * 10 9 7 12 12 H 1.08997 * 110.02070 * 306.39895 * 11 10 9 13 13 C 1.54269 * 110.02838 * 67.83717 * 11 10 9 14 14 C 1.54890 * 104.19836 * 142.89734 * 13 11 10 15 15 C 1.54894 * 102.74281 * 322.05466 * 14 13 11 16 16 C 1.53872 * 110.03623 * 184.99856 * 11 10 9 17 17 H 1.09005 * 110.02965 * 121.38377 * 16 11 10 18 18 N 1.46503 * 110.03011 * 0.02562 * 16 11 10 19 19 C 1.34775 * 119.99896 * 155.00063 * 18 16 11 20 20 O 1.21512 * 120.00049 * 359.97438 * 19 18 16 21 21 C 1.48160 * 119.99769 * 179.97438 * 19 18 16 22 22 C 1.40173 * 121.00630 * 359.92951 * 21 19 18 23 23 C 1.38011 * 118.71272 * 179.97438 * 22 21 19 24 24 N 1.31660 * 121.43112 * 0.06562 * 23 22 21 25 25 C 1.32950 * 122.25947 * 359.97058 * 24 23 22 26 26 C 1.38881 * 121.00349 * 179.97438 * 21 19 18 27 27 C 1.50966 * 133.28593 * 359.97438 * 26 21 19 28 28 C 1.51442 * 103.91935 * 179.97438 * 27 26 21 29 29 O 1.21278 * 126.45335 * 180.02562 * 28 27 26 30 30 N 1.34348 * 107.09138 * 0.02562 * 28 27 26 31 31 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 32 32 H 0.97003 * 120.00480 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.47018 * 59.99719 * 10 9 7 34 34 H 1.08994 * 109.47375 * 300.00072 * 10 9 7 35 35 H 1.09005 * 110.48731 * 261.57191 * 13 11 10 36 36 H 1.08998 * 110.48886 * 24.08386 * 13 11 10 37 37 H 1.08997 * 110.76145 * 80.36681 * 14 13 11 38 38 H 1.09001 * 110.75588 * 203.56163 * 14 13 11 39 39 H 1.08998 * 110.48978 * 279.26166 * 15 14 13 40 40 H 1.09004 * 110.48053 * 156.62043 * 15 14 13 41 41 H 0.96999 * 120.00218 * 334.99010 * 18 16 11 42 42 H 1.08010 * 120.64175 * 0.02843 * 22 21 19 43 43 H 1.08000 * 119.28695 * 180.02562 * 23 22 21 44 44 H 1.08997 * 110.53792 * 298.60449 * 27 26 21 45 45 H 1.09001 * 110.53832 * 61.38938 * 27 26 21 46 46 H 0.97003 * 123.78851 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 1 0.3597 -4.7083 0.8257 13 6 0.3043 -4.8663 -1.3408 14 6 0.1414 -6.3787 -1.6328 15 6 1.4873 -6.9682 -1.1426 16 6 1.8159 -6.1562 0.1271 17 1 1.4768 -6.6933 1.0130 18 7 3.2585 -5.9144 0.2093 19 6 4.0599 -6.8168 0.8090 20 8 3.5859 -7.8308 1.2820 21 6 5.5189 -6.5725 0.8916 22 6 6.0882 -5.4109 0.3519 23 6 7.4526 -5.2311 0.4559 24 7 8.2197 -6.1238 1.0461 25 6 7.7307 -7.2420 1.5734 26 6 6.3639 -7.4880 1.5053 27 6 6.1329 -8.8169 2.1834 28 6 7.5178 -9.2503 2.6169 29 8 7.8019 -10.2721 3.2050 30 7 8.3722 -8.2896 2.2271 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3881 0.0005 33 1 2.6847 -3.7145 0.8905 34 1 2.6846 -3.7146 -0.8894 35 1 -0.6710 -4.3893 -1.2440 36 1 0.8872 -4.3847 -2.1260 37 1 -0.6916 -6.7941 -1.0659 38 1 0.0058 -6.5536 -2.7002 39 1 2.2622 -6.8282 -1.8962 40 1 1.3752 -8.0252 -0.9011 41 1 3.6368 -5.1048 -0.1680 42 1 5.4709 -4.6703 -0.1351 43 1 7.9009 -4.3393 0.0437 44 1 5.4813 -8.6964 3.0488 45 1 5.7097 -9.5358 1.4819 46 1 9.3290 -8.3226 2.3836 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732618921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:49 Heat of formation + Delta-G solvation = -7.176906 kcal Electronic energy + Delta-G solvation = -29797.377201 eV Core-core repulsion = 25687.416253 eV Total energy + Delta-G solvation = -4109.960948 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.17554 -40.32598 -39.28283 -38.04838 -36.47210 -34.47029 -33.98819 -33.41673 -31.50335 -30.94617 -28.96654 -28.64903 -27.60367 -24.83614 -24.52614 -22.95075 -22.57605 -21.83566 -21.22710 -20.56726 -19.20639 -18.80181 -17.72928 -17.38753 -17.11803 -16.64029 -16.21931 -15.71448 -15.41079 -15.17940 -15.05550 -14.61394 -14.54392 -14.42591 -14.10712 -13.84951 -13.76234 -13.59928 -13.12518 -13.11266 -13.00543 -12.66042 -12.28955 -11.77848 -11.44713 -11.40951 -10.94861 -10.93367 -10.89094 -10.72332 -10.58337 -10.51473 -10.44455 -10.34185 -10.15365 -10.02699 -9.80454 -9.76618 -9.12627 -8.95028 -8.76475 -7.02880 -5.85631 -3.15077 0.28972 0.50879 1.93265 2.19343 2.68491 2.89520 3.36970 3.42080 3.44631 3.44996 3.52156 3.97358 4.17055 4.24341 4.37217 4.48346 4.64026 4.72779 4.77244 4.98216 5.01192 5.08679 5.23058 5.36349 5.41880 5.45367 5.51368 5.56820 5.57817 5.65897 5.76994 5.83318 5.85103 5.97246 6.04793 6.05974 6.12680 6.19528 6.31967 6.34779 6.45780 6.49981 6.59687 6.70735 7.27040 7.35164 7.53660 7.59587 7.98986 8.32558 9.44408 10.00954 10.35292 11.37016 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011279 B = 0.002901 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.896524 B = 9651.025313 C =11625.378647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.728 5.728 10 C 0.157 3.843 11 C -0.109 4.109 12 H 0.084 0.916 13 C -0.112 4.112 14 C -0.125 4.125 15 C -0.131 4.131 16 C 0.148 3.852 17 H 0.093 0.907 18 N -0.708 5.708 19 C 0.555 3.445 20 O -0.530 6.530 21 C -0.035 4.035 22 C -0.161 4.161 23 C 0.142 3.858 24 N -0.489 5.489 25 C 0.346 3.654 26 C -0.132 4.132 27 C -0.105 4.105 28 C 0.537 3.463 29 O -0.493 6.493 30 N -0.645 5.645 31 H 0.255 0.745 32 H 0.385 0.615 33 H 0.021 0.979 34 H 0.016 0.984 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.408 0.592 42 H 0.152 0.848 43 H 0.176 0.824 44 H 0.135 0.865 45 H 0.134 0.866 46 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.830 -15.632 -1.457 19.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.372 5.372 10 C 0.029 3.971 11 C -0.128 4.128 12 H 0.102 0.898 13 C -0.150 4.150 14 C -0.163 4.163 15 C -0.170 4.170 16 C 0.044 3.956 17 H 0.111 0.889 18 N -0.361 5.361 19 C 0.341 3.659 20 O -0.407 6.407 21 C -0.046 4.046 22 C -0.182 4.182 23 C -0.015 4.015 24 N -0.204 5.204 25 C 0.114 3.886 26 C -0.138 4.138 27 C -0.144 4.144 28 C 0.324 3.676 29 O -0.365 6.365 30 N -0.292 5.292 31 H 0.065 0.935 32 H 0.219 0.781 33 H 0.038 0.962 34 H 0.034 0.966 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.248 0.752 42 H 0.169 0.831 43 H 0.193 0.807 44 H 0.153 0.847 45 H 0.152 0.848 46 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 11.544 -16.731 -0.703 20.340 hybrid contribution 0.018 1.490 -0.193 1.503 sum 11.562 -15.241 -0.896 19.152 Atomic orbital electron populations 1.69665 1.05141 1.25663 1.57405 1.24748 0.95513 0.97746 1.02781 0.86138 0.78769 0.84122 0.77241 1.20515 1.21835 1.21850 1.19228 0.90988 0.84099 1.43110 0.91145 1.42319 1.05917 0.99656 1.89314 1.20689 0.93448 0.85818 0.97190 1.22237 0.98028 0.93297 0.99232 0.89767 1.22364 1.00877 0.95124 0.96588 1.22489 0.96730 0.96263 1.00776 1.22761 0.97944 0.99405 0.96899 1.21746 0.78392 0.96366 0.99126 0.88928 1.46321 1.08295 1.23556 1.57978 1.18089 0.85409 0.83745 0.78695 1.90760 1.75868 1.26960 1.47093 1.19606 0.93715 0.93917 0.97393 1.22388 0.97117 0.97385 1.01346 1.22504 0.89783 0.96150 0.93099 1.66623 1.41317 1.01169 1.11324 1.18252 0.88330 0.88671 0.93342 1.20386 0.93212 0.97977 1.02268 1.21060 0.95547 0.94449 1.03363 1.20662 0.87948 0.81786 0.77203 1.90844 1.82221 1.23769 1.39697 1.43522 1.12112 1.18654 1.54917 0.93472 0.78097 0.96178 0.96605 0.91109 0.90937 0.91496 0.91548 0.91262 0.91349 0.75227 0.83054 0.80740 0.84722 0.84791 0.74223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.96 13.06 55.49 0.72 -26.24 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 21.34 29.55 -169.99 -5.02 16.32 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.24 -6.32 9.99 -15.06 -0.15 -6.47 16 8 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 9 N -0.73 -16.79 5.45 -59.91 -0.33 -17.12 16 10 C 0.16 2.69 4.18 -4.04 -0.02 2.68 16 11 C -0.11 -1.54 2.96 -89.50 -0.27 -1.81 16 12 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 13 C -0.11 -1.51 6.08 -25.07 -0.15 -1.66 16 14 C -0.12 -1.35 6.91 -24.74 -0.17 -1.52 16 15 C -0.13 -1.44 6.53 -25.07 -0.16 -1.61 16 16 C 0.15 1.82 3.23 -66.82 -0.22 1.61 16 17 H 0.09 1.21 7.56 -51.93 -0.39 0.82 16 18 N -0.71 -8.18 4.35 -53.57 -0.23 -8.42 16 19 C 0.56 6.73 7.80 -12.19 -0.09 6.63 16 20 O -0.53 -7.56 15.29 5.36 0.08 -7.48 16 21 C -0.04 -0.37 5.89 -104.86 -0.62 -0.99 16 22 C -0.16 -1.39 9.64 -38.94 -0.38 -1.76 16 23 C 0.14 1.17 11.14 -17.71 -0.20 0.97 16 24 N -0.49 -4.87 10.36 -12.38 -0.13 -5.00 16 25 C 0.35 3.46 8.27 -154.44 -1.28 2.19 16 26 C -0.13 -1.36 6.17 -103.96 -0.64 -2.01 16 27 C -0.10 -1.00 5.63 -28.54 -0.16 -1.16 16 28 C 0.54 5.52 8.71 -10.81 -0.09 5.42 16 29 O -0.49 -6.51 18.03 5.56 0.10 -6.41 16 30 N -0.65 -5.74 5.85 -11.21 -0.07 -5.81 16 31 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.39 9.51 7.55 -40.82 -0.31 9.20 16 33 H 0.02 0.36 7.42 -51.93 -0.39 -0.03 16 34 H 0.02 0.27 7.11 -51.93 -0.37 -0.10 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.06 7.76 -51.93 -0.40 0.65 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.75 8.05 -51.93 -0.42 0.33 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.41 4.40 4.06 -40.82 -0.17 4.23 16 42 H 0.15 1.07 6.56 -52.48 -0.34 0.73 16 43 H 0.18 0.93 8.06 -52.49 -0.42 0.50 16 44 H 0.14 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.13 1.21 8.14 -51.93 -0.42 0.78 16 46 H 0.42 2.93 8.96 -40.82 -0.37 2.56 16 LS Contribution 378.12 15.07 5.70 5.70 Total: -1.00 -32.46 378.12 -9.94 -42.40 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -6.08 Total: 11.95 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -4.69 Total: 0.10 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: -0.03 Total: -62.58 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.18 Total: -13.89 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.46 -9.94 -42.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732618921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.224 kcal (2) G-P(sol) polarization free energy of solvation -32.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds