Wall clock time and date at job start Wed Apr 1 2020 02:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34662 * 125.80181 * 2 1 4 4 C 1.37863 * 107.39511 * 180.17899 * 3 2 1 5 5 C 1.47689 * 126.36906 * 179.83622 * 4 3 2 6 6 C 1.36609 * 125.64782 * 179.71256 * 5 4 3 7 7 C 1.39772 * 107.11791 * 180.02562 * 6 5 4 8 8 C 1.37841 * 106.78103 * 0.02562 * 7 6 5 9 9 C 1.46313 * 125.96833 * 180.02562 * 8 7 6 10 10 O 1.21750 * 119.99486 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99852 * 179.97438 * 9 8 7 12 12 C 1.46504 * 119.99427 * 180.02562 * 11 9 8 13 13 C 1.52997 * 110.64182 * 300.69873 * 12 11 9 14 14 C 1.55163 * 110.86719 * 177.45118 * 12 11 9 15 15 C 1.54904 * 101.58073 * 277.06821 * 14 12 11 16 16 N 1.47421 * 104.83620 * 322.98869 * 15 14 12 17 17 C 1.36936 * 125.65035 * 204.09628 * 16 15 14 18 18 H 1.08003 * 119.99872 * 180.02562 * 17 16 15 19 19 C 1.38807 * 119.99824 * 0.04033 * 17 16 15 20 20 N 1.31611 * 120.00200 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99647 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47479 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47174 * 120.00294 * 21 19 17 24 24 H 1.48501 * 109.47230 * 240.00266 * 21 19 17 25 25 C 1.47025 * 108.70178 * 24.13268 * 16 15 14 26 26 O 1.34323 * 125.65491 * 0.07103 * 5 4 3 27 27 C 1.41160 * 107.25310 * 359.57506 * 4 3 2 28 28 N 1.30537 * 108.10331 * 0.26232 * 27 4 3 29 29 H 1.08993 * 109.47050 * 270.31377 * 1 2 3 30 30 H 1.08997 * 109.47433 * 30.31864 * 1 2 3 31 31 H 1.09009 * 109.46892 * 150.31679 * 1 2 3 32 32 H 1.07996 * 126.30136 * 0.02562 * 3 2 1 33 33 H 1.07998 * 126.43793 * 0.05646 * 6 5 4 34 34 H 1.08002 * 126.60411 * 179.97438 * 7 6 5 35 35 H 0.96991 * 120.00318 * 359.97438 * 11 9 8 36 36 H 1.09002 * 109.47153 * 181.69032 * 13 12 11 37 37 H 1.09001 * 109.46832 * 61.69223 * 13 12 11 38 38 H 1.09004 * 109.47261 * 301.69204 * 13 12 11 39 39 H 1.08995 * 111.00334 * 35.14471 * 14 12 11 40 40 H 1.08999 * 111.00142 * 158.99183 * 14 12 11 41 41 H 1.09007 * 110.36208 * 204.15318 * 15 14 12 42 42 H 1.08996 * 110.45982 * 81.88497 * 15 14 12 43 43 H 0.97004 * 119.99847 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.88484 * 239.52534 * 25 16 15 45 45 H 1.08998 * 110.01061 * 118.42466 * 25 16 15 46 46 H 1.08004 * 125.95148 * 180.22814 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2527 1.0922 0.0000 4 6 3.5608 0.6569 -0.0041 5 6 4.7673 1.5087 -0.0090 6 6 6.0580 1.0611 -0.0075 7 6 6.8844 2.1883 -0.0129 8 6 6.0553 3.2895 -0.0171 9 6 6.4845 4.6883 -0.0239 10 8 7.6711 4.9609 -0.0270 11 7 5.5663 5.6749 -0.0279 12 6 5.9961 7.0754 -0.0354 13 6 6.8544 7.3827 1.1934 14 6 4.7736 8.0284 -0.1034 15 6 4.4763 8.0449 -1.6235 16 7 5.8018 8.0077 -2.2678 17 6 6.0897 8.4597 -3.5279 18 1 7.0970 8.3871 -3.9106 19 6 5.0869 9.0114 -4.3133 20 7 3.8595 9.1006 -3.8466 21 14 5.4795 9.6272 -6.0326 22 1 6.9211 9.4138 -6.3178 23 1 4.6635 8.8810 -7.0240 24 1 5.1657 11.0758 -6.1232 25 6 6.7633 7.4042 -1.3334 26 8 4.7774 2.8519 -0.0089 27 6 3.5325 -0.7544 0.0034 28 7 2.2838 -1.1350 0.0058 29 1 -0.3633 0.0056 1.0276 30 1 -0.3634 0.8871 -0.5187 31 1 -0.3633 -0.8929 -0.5090 32 1 1.9209 2.1199 0.0004 33 1 6.3793 0.0300 -0.0034 34 1 7.9644 2.1951 -0.0130 35 1 4.6210 5.4577 -0.0266 36 1 7.1383 8.4351 1.1843 37 1 7.7517 6.7641 1.1737 38 1 6.2847 7.1679 2.0975 39 1 3.9303 7.6225 0.4553 40 1 5.0342 9.0244 0.2547 41 1 3.9473 8.9581 -1.8967 42 1 3.8919 7.1696 -1.9070 43 1 3.1588 9.4865 -4.3953 44 1 7.5664 8.1099 -1.1207 45 1 7.1762 6.4908 -1.7615 46 1 4.3938 -1.4060 0.0061 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046762607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:06 Heat of formation + Delta-G solvation = 92.919471 kcal Electronic energy + Delta-G solvation = -29687.129731 eV Core-core repulsion = 25581.509288 eV Total energy + Delta-G solvation = -4105.620443 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.59209 -41.39859 -39.71812 -37.25547 -34.17378 -33.97083 -32.96137 -32.06767 -31.47915 -30.09958 -28.93831 -28.61673 -26.92917 -25.66882 -24.01283 -23.26811 -22.38708 -21.27646 -20.68217 -20.38555 -20.12350 -19.00456 -18.37271 -17.42175 -16.78474 -16.39578 -15.79959 -15.69157 -15.54368 -14.82436 -14.67451 -14.39695 -14.26641 -13.68179 -13.53672 -13.44303 -13.28725 -13.19673 -13.00520 -12.82147 -12.73847 -12.35368 -12.24112 -12.01677 -11.73092 -11.55024 -11.27789 -10.92659 -10.86502 -10.45539 -10.34906 -10.21909 -10.05866 -10.03929 -9.93155 -9.70185 -9.65996 -9.43947 -8.70746 -8.62871 -7.84456 -6.79516 -5.63715 -3.03819 0.78560 1.50386 1.98030 2.02786 2.61725 2.93098 3.37885 3.41526 3.47466 3.47914 3.50030 3.99178 4.42785 4.51294 4.57189 4.69288 4.73789 4.88306 4.96579 4.98288 5.16489 5.17129 5.25745 5.39468 5.50760 5.57397 5.66914 5.74380 5.78520 5.86986 6.03755 6.10355 6.17519 6.22906 6.34787 6.36728 6.44186 6.45331 6.51037 6.70014 6.78832 6.90505 7.12264 7.20890 7.46557 7.65498 7.78148 7.85819 8.35508 8.40670 9.24879 9.85574 10.50302 11.40763 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010666 B = 0.002778 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.445645 B =10078.385073 C =11328.808062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.366 5.366 3 C 0.090 3.910 4 C -0.185 4.185 5 C 0.106 3.894 6 C -0.217 4.217 7 C -0.114 4.114 8 C -0.078 4.078 9 C 0.604 3.396 10 O -0.519 6.519 11 N -0.696 5.696 12 C 0.158 3.842 13 C -0.151 4.151 14 C -0.146 4.146 15 C 0.152 3.848 16 N -0.604 5.604 17 C -0.215 4.215 18 H 0.078 0.922 19 C -0.014 4.014 20 N -0.925 5.925 21 Si 0.914 3.086 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.136 3.864 26 O -0.160 6.160 27 C 0.086 3.914 28 N -0.296 5.296 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.187 0.813 33 H 0.155 0.845 34 H 0.161 0.839 35 H 0.401 0.599 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.108 0.892 42 H 0.010 0.990 43 H 0.250 0.750 44 H 0.033 0.967 45 H 0.033 0.967 46 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.600 -17.485 12.738 22.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.145 5.145 3 C -0.059 4.059 4 C -0.196 4.196 5 C 0.052 3.948 6 C -0.236 4.236 7 C -0.135 4.135 8 C -0.130 4.130 9 C 0.390 3.610 10 O -0.398 6.398 11 N -0.346 5.346 12 C 0.073 3.927 13 C -0.209 4.209 14 C -0.185 4.185 15 C 0.027 3.973 16 N -0.330 5.330 17 C -0.344 4.344 18 H 0.096 0.904 19 C -0.209 4.209 20 N -0.574 5.574 21 Si 0.745 3.255 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.218 1.218 25 C 0.009 3.991 26 O -0.055 6.055 27 C -0.101 4.101 28 N -0.116 5.116 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.204 0.796 33 H 0.173 0.827 34 H 0.178 0.822 35 H 0.236 0.764 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.126 0.874 42 H 0.028 0.972 43 H 0.061 0.939 44 H 0.050 0.950 45 H 0.051 0.949 46 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -6.102 -17.963 12.546 22.744 hybrid contribution 0.259 0.711 -1.000 1.254 sum -5.842 -17.252 11.546 21.566 Atomic orbital electron populations 1.22004 0.73297 1.05147 1.03898 1.48361 1.07191 1.03680 1.55277 1.23111 0.90295 0.93897 0.98581 1.18000 0.89202 0.91940 1.20494 1.19693 0.93282 0.79657 1.02165 1.21517 0.90900 1.00217 1.10981 1.22015 1.00946 0.90057 1.00467 1.22487 0.80786 0.95238 1.14468 1.16406 0.85941 0.81572 0.77083 1.90854 1.15909 1.81966 1.51028 1.45904 1.09420 1.05898 1.73357 1.21418 0.96157 0.79193 0.95976 1.22061 1.00682 1.02234 0.95945 1.23358 0.95309 0.98189 1.01612 1.21940 0.87998 1.02513 0.84821 1.44509 1.04495 1.70712 1.13283 1.19151 0.94886 1.31578 0.88759 0.90449 1.24755 0.95493 1.01830 0.98784 1.69783 1.00408 1.51272 1.35959 0.85996 0.77438 0.78159 0.83946 1.20516 1.21858 1.21776 1.21617 0.92435 0.96437 0.88579 1.84058 1.29252 1.21267 1.70963 1.23886 0.95283 0.92853 0.98103 1.77230 1.01503 1.08044 1.24826 0.90214 0.88846 0.88846 0.79637 0.82735 0.82167 0.76418 0.91575 0.90750 0.93065 0.91878 0.90338 0.87391 0.97184 0.93912 0.94958 0.94886 0.79074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.42 11.45 59.85 0.69 1.11 16 2 N -0.37 -3.15 3.99 -67.55 -0.27 -3.42 16 3 C 0.09 0.82 11.51 -16.45 -0.19 0.63 16 4 C -0.18 -1.94 6.12 -105.07 -0.64 -2.58 16 5 C 0.11 1.28 7.16 -36.31 -0.26 1.02 16 6 C -0.22 -2.44 10.56 -39.60 -0.42 -2.86 16 7 C -0.11 -1.52 10.65 -39.15 -0.42 -1.94 16 8 C -0.08 -1.18 7.16 -36.48 -0.26 -1.44 16 9 C 0.60 10.51 6.99 -13.01 -0.09 10.42 16 10 O -0.52 -10.20 13.84 5.14 0.07 -10.13 16 11 N -0.70 -11.70 5.15 -47.30 -0.24 -11.94 16 12 C 0.16 2.87 0.81 -129.98 -0.11 2.76 16 13 C -0.15 -2.39 8.36 37.16 0.31 -2.08 16 14 C -0.15 -2.65 6.09 -24.58 -0.15 -2.80 16 15 C 0.15 3.62 5.87 -2.53 -0.01 3.60 16 16 N -0.60 -15.77 3.39 -170.08 -0.58 -16.35 16 17 C -0.22 -6.14 10.27 -15.06 -0.15 -6.30 16 18 H 0.08 2.18 7.83 -52.48 -0.41 1.76 16 19 C -0.01 -0.39 5.49 -17.44 -0.10 -0.49 16 20 N -0.92 -26.84 10.09 55.49 0.56 -26.28 16 21 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 C 0.14 3.07 6.16 -3.06 -0.02 3.05 16 26 O -0.16 -2.22 10.42 3.47 0.04 -2.18 16 27 C 0.09 0.80 11.76 -16.99 -0.20 0.60 16 28 N -0.30 -3.05 12.51 30.85 0.39 -2.66 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.36 8.14 -51.92 -0.42 -0.07 16 32 H 0.19 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.16 1.94 8.06 -52.49 -0.42 1.52 16 35 H 0.40 6.06 8.23 -40.82 -0.34 5.72 16 36 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 37 H 0.07 1.26 6.27 -51.93 -0.33 0.94 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.97 8.06 -51.93 -0.42 0.55 16 40 H 0.08 1.39 8.04 -51.93 -0.42 0.97 16 41 H 0.11 2.89 5.87 -51.93 -0.30 2.58 16 42 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.03 0.73 7.82 -51.93 -0.41 0.33 16 45 H 0.03 0.81 6.68 -51.93 -0.35 0.46 16 46 H 0.19 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 384.84 15.07 5.80 5.80 Total: -1.00 -35.07 384.84 -7.61 -42.68 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -6.33 Total: 4.38 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -2.02 Total: 2.72 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: -0.14 Total: -60.65 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.11 Total: -12.32 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.07 -7.61 -42.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046762607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.597 kcal (2) G-P(sol) polarization free energy of solvation -35.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds