Wall clock time and date at job start Wed Apr 1 2020 03:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38167 * 120.50224 * 2 1 4 4 N 1.31794 * 120.89957 * 179.97438 * 3 2 1 5 5 C 1.31835 * 122.04847 * 0.02562 * 4 3 2 6 6 C 1.38125 * 120.89720 * 359.71572 * 5 4 3 7 7 C 1.39802 * 120.50034 * 179.97438 * 2 1 3 8 8 C 1.48147 * 120.92370 * 0.02973 * 7 2 1 9 9 O 1.21517 * 119.99722 * 354.18800 * 8 7 2 10 10 N 1.34772 * 120.00289 * 174.46839 * 8 7 2 11 11 C 1.46497 * 120.00343 * 179.72263 * 10 8 7 12 12 H 1.09006 * 115.51440 * 9.41304 * 11 10 8 13 13 C 1.53002 * 117.44343 * 223.99715 * 11 10 8 14 14 H 1.08992 * 119.52676 * 4.08875 * 13 11 10 15 15 C 1.54430 * 118.09711 * 160.62232 * 13 11 10 16 16 N 1.48555 * 104.54148 * 87.32696 * 15 13 11 17 17 C 1.46896 * 111.00188 * 200.94808 * 16 15 13 18 18 C 1.50702 * 109.47174 * 305.41805 * 17 16 15 19 19 O 1.21297 * 119.99902 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00436 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00324 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99677 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00143 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00039 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00009 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46856 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.47150 * 120.00162 * 25 23 21 28 28 H 1.48504 * 109.46947 * 240.00324 * 25 23 21 29 29 C 1.48559 * 104.21961 * 320.50300 * 16 15 13 30 30 C 1.53001 * 117.44854 * 154.83478 * 11 10 8 31 31 H 1.09002 * 119.52297 * 354.35602 * 30 11 10 32 32 H 1.09003 * 109.47143 * 263.68692 * 1 2 3 33 33 H 1.08993 * 109.47230 * 23.69353 * 1 2 3 34 34 H 1.09004 * 109.46703 * 143.69482 * 1 2 3 35 35 H 1.08006 * 119.54977 * 359.97438 * 3 2 1 36 36 H 1.07995 * 119.54989 * 180.02562 * 5 4 3 37 37 H 1.07995 * 120.50522 * 180.30345 * 6 5 4 38 38 H 0.97007 * 120.00057 * 359.71855 * 10 8 7 39 39 H 1.08997 * 110.45161 * 328.55686 * 15 13 11 40 40 H 1.09008 * 110.52429 * 206.13516 * 15 13 11 41 41 H 1.09001 * 109.47432 * 65.41541 * 17 16 15 42 42 H 1.08998 * 109.47724 * 185.42038 * 17 16 15 43 43 H 0.96996 * 119.99739 * 359.97438 * 20 18 17 44 44 H 0.96999 * 120.00258 * 179.97438 * 24 23 21 45 45 H 1.09001 * 110.41071 * 280.70093 * 29 16 15 46 46 H 1.09008 * 110.40933 * 158.26138 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5262 1.1996 0.0005 5 6 4.2335 0.0870 0.0005 6 6 3.6138 -1.1474 0.0059 7 6 2.2165 -1.2046 0.0005 8 6 1.5079 -2.5056 0.0005 9 8 0.2978 -2.5383 0.1065 10 7 2.2058 -3.6531 -0.1115 11 6 1.5056 -4.9399 -0.1055 12 1 0.4188 -4.8834 -0.1682 13 6 2.1055 -6.0651 0.7400 14 1 2.9815 -5.8650 1.3569 15 6 1.1912 -7.2458 1.1335 16 7 1.3022 -8.1979 -0.0015 17 6 0.1547 -9.1145 -0.0338 18 6 0.0233 -9.8022 1.3007 19 8 0.8087 -9.5535 2.1910 20 7 -0.9661 -10.6943 1.5047 21 6 -1.0853 -11.3203 2.7186 22 1 -0.3860 -11.0988 3.5112 23 6 -2.1057 -12.2396 2.9290 24 7 -2.9563 -12.5094 1.9643 25 14 -2.2677 -13.0930 4.5827 26 1 -1.1938 -12.6184 5.4919 27 1 -3.5923 -12.7775 5.1750 28 1 -2.1459 -14.5612 4.3961 29 6 1.3233 -7.3287 -1.2061 30 6 2.1915 -6.1192 -0.7980 31 1 3.1183 -5.9544 -1.3475 32 1 -0.3633 -0.1130 1.0215 33 1 -0.3633 0.9410 -0.4129 34 1 -0.3633 -0.8282 -0.6085 35 1 1.6691 2.1263 -0.0004 36 1 5.3120 0.1416 0.0014 37 1 4.1994 -2.0548 0.0108 38 1 3.1718 -3.6270 -0.1962 39 1 0.1611 -6.9083 1.2473 40 1 1.5422 -7.7103 2.0551 41 1 -0.7546 -8.5512 -0.2433 42 1 0.3075 -9.8607 -0.8135 43 1 -1.5939 -10.8934 0.7926 44 1 -3.6684 -13.1514 2.1110 45 1 0.3138 -7.0042 -1.4585 46 1 1.7758 -7.8551 -2.0467 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114240607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:08 Heat of formation + Delta-G solvation = 17.080598 kcal Electronic energy + Delta-G solvation = -28600.062490 eV Core-core repulsion = 24491.153426 eV Total energy + Delta-G solvation = -4108.909064 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.24346 -40.24946 -39.11199 -37.97183 -35.37661 -33.99931 -33.82974 -33.25110 -31.90386 -31.24850 -28.27890 -28.03756 -27.43642 -25.36341 -24.58049 -23.08084 -22.21271 -21.20995 -20.91707 -20.32001 -19.18366 -18.43111 -17.85581 -17.43548 -16.54744 -15.96233 -15.85234 -15.73131 -15.55259 -15.12717 -14.92680 -14.55630 -14.29995 -14.21011 -13.86395 -13.76755 -13.54278 -13.47140 -13.05992 -12.97733 -12.81271 -12.42669 -12.09137 -12.01062 -11.88540 -11.57521 -11.38918 -11.26894 -11.03939 -10.88462 -10.61338 -10.35872 -10.33146 -10.25757 -10.12482 -9.77426 -9.53110 -9.43674 -9.02438 -8.44248 -8.06815 -7.95629 -6.44335 -3.85239 0.22564 0.57243 2.41242 2.47599 3.14750 3.25707 3.30694 3.32740 3.58001 3.85855 3.90967 3.96737 4.07622 4.21699 4.22503 4.32689 4.47182 4.53674 4.58358 4.78266 4.87166 4.96383 5.11677 5.14518 5.19860 5.22937 5.30234 5.31580 5.41271 5.49517 5.60772 5.63342 5.68906 5.74131 5.89381 5.96248 5.99091 6.06531 6.14757 6.22712 6.24546 6.59140 7.00299 7.08986 7.20528 7.40802 7.53218 7.72174 8.03280 8.58236 9.15165 9.50676 10.01867 10.73322 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.021658 B = 0.001777 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.523370 B =15750.705053 C =16166.928015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.074 4.074 3 C 0.094 3.906 4 N -0.465 5.465 5 C 0.086 3.914 6 C -0.136 4.136 7 C -0.094 4.094 8 C 0.562 3.438 9 O -0.517 6.517 10 N -0.691 5.691 11 C 0.101 3.899 12 H 0.136 0.864 13 C -0.160 4.160 14 H 0.118 0.882 15 C 0.065 3.935 16 N -0.487 5.487 17 C 0.034 3.966 18 C 0.442 3.558 19 O -0.581 6.581 20 N -0.561 5.561 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.900 5.900 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 C 0.059 3.941 30 C -0.168 4.168 31 H 0.118 0.882 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.163 0.837 36 H 0.163 0.837 37 H 0.139 0.861 38 H 0.402 0.598 39 H 0.040 0.960 40 H 0.123 0.877 41 H 0.050 0.950 42 H 0.093 0.907 43 H 0.393 0.607 44 H 0.271 0.729 45 H 0.046 0.954 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.725 23.288 -9.172 27.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.077 4.077 3 C -0.064 4.064 4 N -0.174 5.174 5 C -0.070 4.070 6 C -0.157 4.157 7 C -0.105 4.105 8 C 0.349 3.651 9 O -0.393 6.393 10 N -0.340 5.340 11 C -0.005 4.005 12 H 0.153 0.847 13 C -0.180 4.180 14 H 0.136 0.864 15 C -0.062 4.062 16 N -0.211 5.211 17 C -0.098 4.098 18 C 0.227 3.773 19 O -0.466 6.466 20 N -0.197 5.197 21 C -0.429 4.429 22 H 0.122 0.878 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 C -0.069 4.069 30 C -0.188 4.188 31 H 0.136 0.864 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.180 0.820 36 H 0.180 0.820 37 H 0.157 0.843 38 H 0.237 0.763 39 H 0.059 0.941 40 H 0.141 0.859 41 H 0.068 0.932 42 H 0.111 0.889 43 H 0.226 0.774 44 H 0.081 0.919 45 H 0.064 0.936 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.113 23.717 -8.453 27.521 hybrid contribution -1.046 -1.035 0.150 1.479 sum 10.067 22.682 -8.303 26.168 Atomic orbital electron populations 1.21022 0.88822 1.03642 1.04131 1.21163 0.98592 0.92372 0.95562 1.22790 0.89724 0.97477 0.96389 1.67560 1.08353 1.31831 1.09654 1.22735 1.00664 0.87157 0.96430 1.22348 0.93772 1.00315 0.99251 1.20193 0.93785 0.93658 1.02838 1.18121 0.87018 0.83318 0.76645 1.90770 1.13386 1.86854 1.48263 1.45161 1.10471 1.04681 1.73704 1.21871 0.97164 0.78349 1.03164 0.84685 1.24126 1.02824 0.97529 0.93549 0.86422 1.22876 0.96868 0.88960 0.97474 1.65410 1.39499 1.14953 1.01212 1.22102 0.92128 0.96891 0.98685 1.19678 0.84244 0.84292 0.89074 1.90447 1.44395 1.66468 1.45310 1.41851 1.26598 1.36520 1.14718 1.19754 1.12851 1.19253 0.91006 0.87794 1.25276 0.95733 0.97616 0.99320 1.69618 1.16925 1.35005 1.32607 0.85794 0.78253 0.78782 0.81482 1.19202 1.20761 1.20717 1.22698 0.97921 0.91422 0.94833 1.23802 1.02030 0.96286 0.96669 0.86368 0.90087 0.91649 0.88531 0.81961 0.82028 0.84310 0.76286 0.94124 0.85905 0.93152 0.88934 0.77423 0.91876 0.93587 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 8.84 36.00 0.32 -0.66 16 2 C -0.07 -0.64 5.93 -104.06 -0.62 -1.25 16 3 C 0.09 0.73 10.83 -17.59 -0.19 0.54 16 4 N -0.47 -4.00 10.34 -13.31 -0.14 -4.14 16 5 C 0.09 0.58 11.17 -17.59 -0.20 0.38 16 6 C -0.14 -0.88 9.60 -39.02 -0.37 -1.25 16 7 C -0.09 -0.83 5.91 -104.64 -0.62 -1.44 16 8 C 0.56 5.97 7.74 -12.19 -0.09 5.88 16 9 O -0.52 -7.08 13.09 5.35 0.07 -7.01 16 10 N -0.69 -6.17 5.52 -54.65 -0.30 -6.47 16 11 C 0.10 1.11 5.98 -67.93 -0.41 0.70 16 12 H 0.14 1.76 7.40 -51.93 -0.38 1.37 16 13 C -0.16 -1.98 7.05 -89.28 -0.63 -2.61 16 14 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 15 C 0.07 1.08 5.12 -2.16 -0.01 1.07 16 16 N -0.49 -7.97 5.33 -231.38 -1.23 -9.21 16 17 C 0.03 0.59 5.55 -4.98 -0.03 0.57 16 18 C 0.44 10.26 7.50 -10.99 -0.08 10.18 16 19 O -0.58 -15.20 13.24 5.54 0.07 -15.12 16 20 N -0.56 -14.08 5.29 -10.96 -0.06 -14.13 16 21 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 22 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.38 13.05 55.50 0.72 -23.65 16 25 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 29 C 0.06 0.74 6.29 -2.19 -0.01 0.72 16 30 C -0.17 -1.78 7.04 -89.31 -0.63 -2.41 16 31 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.38 8.06 -51.93 -0.42 -0.04 16 34 H 0.10 0.98 5.94 -51.93 -0.31 0.67 16 35 H 0.16 0.84 8.06 -52.48 -0.42 0.42 16 36 H 0.16 0.62 8.06 -52.49 -0.42 0.20 16 37 H 0.14 0.49 6.58 -52.49 -0.35 0.14 16 38 H 0.40 2.40 7.00 -40.82 -0.29 2.11 16 39 H 0.04 0.70 8.00 -51.93 -0.42 0.28 16 40 H 0.12 2.43 6.05 -51.92 -0.31 2.12 16 41 H 0.05 0.82 7.88 -51.93 -0.41 0.41 16 42 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 43 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 44 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.05 0.55 7.82 -51.93 -0.41 0.15 16 46 H 0.09 0.97 8.14 -51.92 -0.42 0.54 16 LS Contribution 381.38 15.07 5.75 5.75 Total: -1.00 -33.28 381.38 -10.03 -43.32 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -6.08 Total: 12.25 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -3.81 Total: 2.49 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -1.01 Total: -57.60 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: 0.14 Total: -22.14 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.28 -10.03 -43.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114240607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.396 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds