Wall clock time and date at job start Wed Apr 1 2020 03:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38167 * 120.50224 * 2 1 4 4 N 1.31794 * 120.89957 * 179.97438 * 3 2 1 5 5 C 1.31835 * 122.04847 * 0.02562 * 4 3 2 6 6 C 1.38125 * 120.89720 * 359.71572 * 5 4 3 7 7 C 1.39802 * 120.50034 * 179.97438 * 2 1 3 8 8 C 1.48147 * 120.92370 * 0.02973 * 7 2 1 9 9 O 1.21517 * 119.99722 * 354.18800 * 8 7 2 10 10 N 1.34772 * 120.00289 * 174.46839 * 8 7 2 11 11 C 1.46497 * 120.00343 * 179.72263 * 10 8 7 12 12 H 1.09006 * 115.51440 * 9.41304 * 11 10 8 13 13 C 1.53002 * 117.44343 * 223.99715 * 11 10 8 14 14 H 1.08992 * 119.52676 * 4.08875 * 13 11 10 15 15 C 1.54430 * 118.09711 * 160.62232 * 13 11 10 16 16 N 1.48555 * 104.54148 * 87.32696 * 15 13 11 17 17 C 1.46896 * 111.00188 * 200.94808 * 16 15 13 18 18 C 1.50702 * 109.47174 * 305.41805 * 17 16 15 19 19 O 1.21297 * 119.99902 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00436 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00324 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99677 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00143 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00039 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00009 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46856 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.47150 * 120.00162 * 25 23 21 28 28 H 1.48504 * 109.46947 * 240.00324 * 25 23 21 29 29 C 1.48559 * 104.21961 * 320.50300 * 16 15 13 30 30 C 1.53001 * 117.44854 * 154.83478 * 11 10 8 31 31 H 1.09002 * 119.52297 * 354.35602 * 30 11 10 32 32 H 1.09003 * 109.47143 * 263.68692 * 1 2 3 33 33 H 1.08993 * 109.47230 * 23.69353 * 1 2 3 34 34 H 1.09004 * 109.46703 * 143.69482 * 1 2 3 35 35 H 1.08006 * 119.54977 * 359.97438 * 3 2 1 36 36 H 1.07995 * 119.54989 * 180.02562 * 5 4 3 37 37 H 1.07995 * 120.50522 * 180.30345 * 6 5 4 38 38 H 0.97007 * 120.00057 * 359.71855 * 10 8 7 39 39 H 1.08997 * 110.45161 * 328.55686 * 15 13 11 40 40 H 1.09008 * 110.52429 * 206.13516 * 15 13 11 41 41 H 1.09001 * 109.47432 * 65.41541 * 17 16 15 42 42 H 1.08998 * 109.47724 * 185.42038 * 17 16 15 43 43 H 0.96996 * 119.99739 * 359.97438 * 20 18 17 44 44 H 0.96999 * 120.00258 * 179.97438 * 24 23 21 45 45 H 1.09001 * 110.41071 * 280.70093 * 29 16 15 46 46 H 1.09008 * 110.40933 * 158.26138 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5262 1.1996 0.0005 5 6 4.2335 0.0870 0.0005 6 6 3.6138 -1.1474 0.0059 7 6 2.2165 -1.2046 0.0005 8 6 1.5079 -2.5056 0.0005 9 8 0.2978 -2.5383 0.1065 10 7 2.2058 -3.6531 -0.1115 11 6 1.5056 -4.9399 -0.1055 12 1 0.4188 -4.8834 -0.1682 13 6 2.1055 -6.0651 0.7400 14 1 2.9815 -5.8650 1.3569 15 6 1.1912 -7.2458 1.1335 16 7 1.3022 -8.1979 -0.0015 17 6 0.1547 -9.1145 -0.0338 18 6 0.0233 -9.8022 1.3007 19 8 0.8087 -9.5535 2.1910 20 7 -0.9661 -10.6943 1.5047 21 6 -1.0853 -11.3203 2.7186 22 1 -0.3860 -11.0988 3.5112 23 6 -2.1057 -12.2396 2.9290 24 7 -2.9563 -12.5094 1.9643 25 14 -2.2677 -13.0930 4.5827 26 1 -1.1938 -12.6184 5.4919 27 1 -3.5923 -12.7775 5.1750 28 1 -2.1459 -14.5612 4.3961 29 6 1.3233 -7.3287 -1.2061 30 6 2.1915 -6.1192 -0.7980 31 1 3.1183 -5.9544 -1.3475 32 1 -0.3633 -0.1130 1.0215 33 1 -0.3633 0.9410 -0.4129 34 1 -0.3633 -0.8282 -0.6085 35 1 1.6691 2.1263 -0.0004 36 1 5.3120 0.1416 0.0014 37 1 4.1994 -2.0548 0.0108 38 1 3.1718 -3.6270 -0.1962 39 1 0.1611 -6.9083 1.2473 40 1 1.5422 -7.7103 2.0551 41 1 -0.7546 -8.5512 -0.2433 42 1 0.3075 -9.8607 -0.8135 43 1 -1.5939 -10.8934 0.7926 44 1 -3.6684 -13.1514 2.1110 45 1 0.3138 -7.0042 -1.4585 46 1 1.7758 -7.8551 -2.0467 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114240607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:07 Heat of formation + Delta-G solvation = -8.241293 kcal Electronic energy + Delta-G solvation = -28601.160529 eV Core-core repulsion = 24491.153426 eV Total energy + Delta-G solvation = -4110.007103 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.96159 -41.25649 -40.17042 -39.51173 -36.53371 -35.84232 -34.46907 -34.21747 -33.30518 -32.59611 -29.40237 -29.20278 -28.34970 -26.67561 -25.79399 -23.97642 -23.09168 -22.05752 -21.88716 -21.37698 -20.95509 -19.86105 -19.12561 -18.22755 -17.67723 -17.24278 -16.76887 -16.58274 -16.32519 -16.31556 -16.27763 -16.14276 -15.59148 -15.16782 -14.97747 -14.94095 -14.71395 -14.34994 -14.20032 -13.82762 -13.70365 -13.56669 -13.48490 -13.20301 -13.16651 -12.93863 -12.55815 -12.54171 -12.42458 -12.41630 -12.11806 -11.95578 -11.50506 -11.37968 -11.12914 -10.95437 -10.42299 -10.23615 -10.03735 -9.99713 -9.84406 -9.41259 -8.48584 -5.97226 -0.40039 0.05008 1.35049 1.40559 1.54668 1.65175 1.67494 2.01445 2.26971 2.58533 2.78249 2.85118 3.18260 3.26838 3.36682 3.47123 3.60083 3.65845 3.72341 3.78609 3.80474 3.93871 4.09440 4.24148 4.25914 4.39483 4.41869 4.48779 4.53680 4.56361 4.61900 4.72278 4.72850 4.77597 4.80923 4.95015 5.05028 5.10026 5.22097 5.30575 5.39905 5.40378 5.59926 5.78294 5.86217 6.05909 6.30026 6.58112 6.87760 6.97674 7.10837 7.53099 8.08649 8.69052 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.021658 B = 0.001777 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.523370 B =15750.705053 C =16166.928015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.089 4.089 3 C 0.090 3.910 4 N -0.486 5.486 5 C 0.084 3.916 6 C -0.126 4.126 7 C -0.110 4.110 8 C 0.559 3.441 9 O -0.556 6.556 10 N -0.675 5.675 11 C 0.108 3.892 12 H 0.113 0.887 13 C -0.169 4.169 14 H 0.131 0.869 15 C 0.066 3.934 16 N -0.501 5.501 17 C 0.045 3.955 18 C 0.438 3.562 19 O -0.614 6.614 20 N -0.572 5.572 21 C -0.332 4.332 22 H 0.080 0.920 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.273 1.273 27 H -0.272 1.272 28 H -0.270 1.270 29 C 0.055 3.945 30 C -0.141 4.141 31 H 0.153 0.847 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.182 0.818 36 H 0.193 0.807 37 H 0.171 0.829 38 H 0.419 0.581 39 H 0.022 0.978 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.116 0.884 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.051 0.949 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.503 24.204 -10.539 29.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.067 4.067 4 N -0.195 5.195 5 C -0.072 4.072 6 C -0.146 4.146 7 C -0.121 4.121 8 C 0.348 3.652 9 O -0.434 6.434 10 N -0.326 5.326 11 C 0.001 3.999 12 H 0.131 0.869 13 C -0.190 4.190 14 H 0.149 0.851 15 C -0.062 4.062 16 N -0.226 5.226 17 C -0.087 4.087 18 C 0.226 3.774 19 O -0.501 6.501 20 N -0.209 5.209 21 C -0.461 4.461 22 H 0.098 0.902 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.198 1.198 27 H -0.197 1.197 28 H -0.195 1.195 29 C -0.072 4.072 30 C -0.161 4.161 31 H 0.171 0.829 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.199 0.801 36 H 0.209 0.791 37 H 0.189 0.811 38 H 0.258 0.742 39 H 0.040 0.960 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.134 0.866 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.069 0.931 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 12.917 24.642 -9.854 29.516 hybrid contribution -1.551 -1.270 0.560 2.082 sum 11.365 23.372 -9.293 27.601 Atomic orbital electron populations 1.20927 0.89121 1.03886 1.03190 1.21275 0.98632 0.92913 0.96345 1.23066 0.89747 0.97902 0.95985 1.67613 1.08686 1.32954 1.10231 1.23291 1.02045 0.86691 0.95184 1.22654 0.92717 1.01683 0.97532 1.20195 0.94962 0.92605 1.04353 1.18476 0.86692 0.84224 0.75832 1.90762 1.15176 1.87431 1.50077 1.44972 1.11246 1.03406 1.72952 1.21570 0.96405 0.79195 1.02690 0.86933 1.23926 1.02661 0.97113 0.95291 0.85108 1.22615 0.96585 0.90521 0.96454 1.65409 1.38675 1.15700 1.02766 1.21994 0.93704 0.97576 0.95391 1.20704 0.82759 0.83178 0.90779 1.90443 1.45312 1.67138 1.47169 1.41922 1.27483 1.37288 1.14230 1.19699 1.13568 1.21084 0.91798 0.90228 1.26052 0.94932 0.97632 1.02725 1.69677 1.17126 1.35282 1.34012 0.84864 0.78204 0.78001 0.77228 1.19778 1.19708 1.19502 1.22847 0.98990 0.91729 0.93627 1.23904 1.02505 0.94743 0.94907 0.82926 0.91120 0.89421 0.90754 0.80067 0.79067 0.81140 0.74190 0.96007 0.89956 0.91560 0.86636 0.77016 0.91290 0.93126 0.87049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.91 8.84 71.24 0.63 -1.28 16 2 C -0.09 -1.47 5.93 -19.50 -0.12 -1.59 16 3 C 0.09 1.28 10.83 84.68 0.92 2.20 16 4 N -0.49 -7.39 10.34 -196.01 -2.03 -9.41 16 5 C 0.08 0.88 11.17 84.67 0.95 1.83 16 6 C -0.13 -1.26 9.60 22.63 0.22 -1.04 16 7 C -0.11 -1.80 5.91 -19.88 -0.12 -1.92 16 8 C 0.56 11.51 7.74 86.88 0.67 12.18 16 9 O -0.56 -15.69 13.09 -3.77 -0.05 -15.74 16 10 N -0.68 -10.70 5.52 -445.12 -2.46 -13.16 16 11 C 0.11 2.25 5.98 44.99 0.27 2.52 16 12 H 0.11 2.95 7.40 -2.38 -0.02 2.93 16 13 C -0.17 -4.03 7.05 -9.92 -0.07 -4.10 16 14 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 15 C 0.07 2.25 5.12 86.47 0.44 2.69 16 16 N -0.50 -16.05 5.33 -885.96 -4.73 -20.78 16 17 C 0.04 1.56 5.55 85.56 0.47 2.04 16 18 C 0.44 20.98 7.50 87.66 0.66 21.63 16 19 O -0.61 -33.59 13.24 -3.08 -0.04 -33.64 16 20 N -0.57 -29.60 5.29 -306.98 -1.62 -31.22 16 21 C -0.33 -18.96 9.68 84.04 0.81 -18.15 16 22 H 0.08 4.85 7.16 -2.91 -0.02 4.82 16 23 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 24 N -0.92 -49.94 13.05 21.66 0.28 -49.65 16 25 Si 0.99 43.24 29.55 68.60 2.03 45.27 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 27 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 28 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 29 C 0.06 1.23 6.29 86.45 0.54 1.77 16 30 C -0.14 -2.58 7.04 -9.94 -0.07 -2.65 16 31 H 0.15 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 0.98 8.06 -2.39 -0.02 0.96 16 34 H 0.07 1.60 5.94 -2.39 -0.01 1.58 16 35 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 36 H 0.19 0.73 8.06 -2.91 -0.02 0.71 16 37 H 0.17 0.47 6.58 -2.91 -0.02 0.45 16 38 H 0.42 3.54 7.00 -92.70 -0.65 2.89 16 39 H 0.02 0.79 8.00 -2.39 -0.02 0.77 16 40 H 0.08 3.47 6.05 -2.38 -0.01 3.46 16 41 H 0.07 2.12 7.88 -2.39 -0.02 2.10 16 42 H 0.12 3.53 8.14 -2.39 -0.02 3.51 16 43 H 0.40 19.49 7.90 -92.71 -0.73 18.76 16 44 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 45 H 0.05 1.11 7.82 -2.39 -0.02 1.09 16 46 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 Total: -1.00 -75.90 381.38 -2.27 -78.17 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: -0.34 Total: 34.29 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: 6.68 Total: 15.87 kcal Atomic # 7 Polarization: -113.68 SS G_CDS: -10.55 Total: -124.23 kcal Atomic # 8 Polarization: -49.28 SS G_CDS: -0.09 Total: -49.37 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -75.90 -2.27 -78.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114240607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.931 kcal (2) G-P(sol) polarization free energy of solvation -75.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds