Wall clock time and date at job start Wed Apr 1 2020 03:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47557 * 2 1 4 4 C 1.50707 * 109.46690 * 240.00074 * 2 1 3 5 5 N 1.30513 * 126.34725 * 60.02847 * 4 2 1 6 6 N 1.28597 * 109.67464 * 179.97438 * 5 4 2 7 7 C 1.30514 * 109.67017 * 359.97438 * 6 5 4 8 8 C 1.50711 * 126.34600 * 180.02562 * 7 6 5 9 9 N 1.46493 * 109.47026 * 90.02066 * 8 7 6 10 10 C 1.34773 * 120.00163 * 180.02562 * 9 8 7 11 11 O 1.21592 * 120.00018 * 359.97438 * 10 9 8 12 12 C 1.47535 * 120.00386 * 180.02562 * 10 9 8 13 13 C 1.39662 * 120.19541 * 0.02562 * 12 10 9 14 14 C 1.37830 * 119.91883 * 179.97438 * 13 12 10 15 15 C 1.38580 * 120.32371 * 0.02562 * 14 13 12 16 16 C 1.38025 * 120.39774 * 359.97438 * 15 14 13 17 17 C 1.38834 * 120.07630 * 359.74707 * 16 15 14 18 18 O 1.35516 * 120.16182 * 180.27243 * 17 16 15 19 19 C 1.34814 * 116.99980 * 354.40481 * 18 17 16 20 20 H 1.07992 * 120.00165 * 5.05815 * 19 18 17 21 21 C 1.38702 * 119.99522 * 185.06402 * 19 18 17 22 22 N 1.31518 * 120.00339 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99727 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47531 * 89.99565 * 23 21 19 25 25 H 1.48504 * 109.47084 * 209.99788 * 23 21 19 26 26 H 1.48503 * 109.46992 * 329.99645 * 23 21 19 27 27 N 1.35489 * 107.31094 * 359.77399 * 7 6 5 28 28 C 1.46505 * 126.98470 * 180.22970 * 27 7 6 29 29 H 1.08994 * 109.47327 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47119 * 59.99573 * 1 2 3 31 31 H 1.09005 * 109.46848 * 299.99916 * 1 2 3 32 32 H 1.08995 * 109.47119 * 120.00426 * 2 1 3 33 33 H 1.08989 * 109.47012 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.46578 * 300.00340 * 3 2 1 35 35 H 1.09001 * 109.47053 * 59.99677 * 3 2 1 36 36 H 1.08995 * 109.46662 * 210.02071 * 8 7 6 37 37 H 1.08996 * 109.46746 * 330.02213 * 8 7 6 38 38 H 0.97003 * 120.00544 * 0.02562 * 9 8 7 39 39 H 1.07996 * 120.04083 * 359.95320 * 13 12 10 40 40 H 1.07995 * 119.83830 * 179.97438 * 14 13 12 41 41 H 1.07996 * 119.79447 * 179.97438 * 15 14 13 42 42 H 1.08004 * 119.96157 * 180.02562 * 16 15 14 43 43 H 0.97003 * 119.99892 * 180.02562 * 22 21 19 44 44 H 1.08996 * 109.46955 * 270.15429 * 28 27 7 45 45 H 1.08996 * 109.47101 * 30.15650 * 28 27 7 46 46 H 1.09002 * 109.47028 * 150.15398 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 7 1.7949 -0.3740 -2.4690 6 7 2.3797 -1.2005 -3.2619 7 6 3.0171 -2.1014 -2.5652 8 6 3.8280 -3.2467 -3.1149 9 7 5.2182 -2.8199 -3.2919 10 6 6.1321 -3.6843 -3.7755 11 8 5.8030 -4.8186 -4.0644 12 6 7.5323 -3.2548 -3.9533 13 6 7.9154 -1.9534 -3.6213 14 6 9.2251 -1.5582 -3.7892 15 6 10.1655 -2.4462 -4.2869 16 6 9.8014 -3.7354 -4.6192 17 6 8.4880 -4.1527 -4.4513 18 8 8.1298 -5.4198 -4.7719 19 6 9.0677 -6.1914 -5.3572 20 1 10.0748 -5.8204 -5.4763 21 6 8.7388 -7.4617 -5.8067 22 7 7.5123 -7.9137 -5.6613 23 14 10.0380 -8.5305 -6.6184 24 1 10.7261 -9.3446 -5.5845 25 1 9.3917 -9.4301 -7.6075 26 1 11.0292 -7.6666 -7.3086 27 7 2.8193 -1.8131 -1.2562 28 6 3.3464 -2.5466 -0.1027 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 3.7911 -4.0848 -2.4191 37 1 3.4171 -3.5542 -4.0764 38 1 5.4810 -1.9151 -3.0611 39 1 7.1861 -1.2574 -3.2338 40 1 9.5197 -0.5515 -3.5325 41 1 11.1893 -2.1274 -4.4154 42 1 10.5402 -4.4218 -5.0061 43 1 7.2825 -8.8022 -5.9753 44 1 2.6405 -3.3253 0.1861 45 1 4.3011 -3.0014 -0.3667 46 1 3.4897 -1.8588 0.7307 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186542276.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:26 Heat of formation + Delta-G solvation = 42.839127 kcal Electronic energy + Delta-G solvation = -29410.633802 eV Core-core repulsion = 25302.841712 eV Total energy + Delta-G solvation = -4107.792090 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.37767 -39.64376 -38.16112 -36.38414 -36.18711 -35.37838 -34.19989 -32.37183 -31.17767 -29.91526 -28.95968 -27.95070 -27.56625 -26.55803 -25.35840 -23.75977 -23.00583 -21.56844 -20.99834 -20.19866 -20.01857 -18.11319 -17.82440 -17.16354 -16.71364 -16.23433 -15.62545 -15.49608 -14.85398 -14.64240 -14.61305 -14.31431 -14.24652 -13.86607 -13.80519 -13.71244 -13.58375 -13.37363 -13.11277 -12.67952 -12.53850 -12.50735 -12.46057 -12.02186 -11.74234 -11.66136 -11.57780 -11.48112 -11.34924 -11.16837 -10.92985 -10.82262 -10.48156 -10.44202 -10.39364 -9.65686 -9.37702 -8.90811 -8.87626 -8.75529 -8.31851 -7.35024 -6.47528 -4.07374 1.48536 1.66371 2.17726 2.28306 2.64296 3.09987 3.11550 3.16188 3.65149 3.67101 3.88484 3.91192 4.10901 4.28684 4.35979 4.58630 4.63399 4.72577 4.81544 4.92177 5.02855 5.04787 5.14344 5.24687 5.25641 5.35313 5.44533 5.47655 5.49224 5.56715 5.63330 5.72938 5.81732 5.83765 5.87028 6.02264 6.02922 6.08095 6.52113 6.58246 6.62736 6.71760 6.87365 7.02585 7.19733 7.25950 7.65402 7.86708 7.97881 8.58825 8.91498 8.96878 9.63557 10.66198 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.017368 B = 0.002427 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.801413 B =11532.954047 C =12636.247143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.005 4.005 3 C -0.142 4.142 4 C 0.179 3.821 5 N -0.289 5.289 6 N -0.273 5.273 7 C 0.162 3.838 8 C 0.215 3.785 9 N -0.741 5.741 10 C 0.559 3.441 11 O -0.497 6.497 12 C -0.227 4.227 13 C -0.037 4.037 14 C -0.230 4.230 15 C -0.049 4.049 16 C -0.237 4.237 17 C 0.190 3.810 18 O -0.123 6.123 19 C -0.404 4.404 20 H 0.094 0.906 21 C 0.045 3.955 22 N -0.832 5.832 23 Si 0.941 3.059 24 H -0.272 1.272 25 H -0.276 1.276 26 H -0.266 1.266 27 N -0.466 5.466 28 C 0.066 3.934 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.394 0.606 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.132 0.868 43 H 0.272 0.728 44 H 0.086 0.914 45 H 0.098 0.902 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.393 13.925 14.400 21.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.026 4.026 3 C -0.200 4.200 4 C -0.089 4.089 5 N -0.129 5.129 6 N -0.114 5.114 7 C -0.105 4.105 8 C 0.089 3.911 9 N -0.399 5.399 10 C 0.349 3.651 11 O -0.370 6.370 12 C -0.232 4.232 13 C -0.056 4.056 14 C -0.249 4.249 15 C -0.068 4.068 16 C -0.256 4.256 17 C 0.130 3.870 18 O -0.021 6.021 19 C -0.479 4.479 20 H 0.112 0.888 21 C -0.163 4.163 22 N -0.463 5.463 23 Si 0.765 3.235 24 H -0.198 1.198 25 H -0.201 1.201 26 H -0.190 1.190 27 N -0.157 5.157 28 C -0.077 4.077 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.120 0.880 38 H 0.229 0.771 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.150 0.850 43 H 0.082 0.918 44 H 0.104 0.896 45 H 0.117 0.883 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.537 13.374 12.947 20.478 hybrid contribution 1.399 -0.756 0.866 1.811 sum -7.138 12.618 13.813 20.024 Atomic orbital electron populations 1.21804 0.92566 1.02443 1.03154 1.19601 0.96973 0.95830 0.90204 1.21812 1.01204 0.93844 1.03172 1.24829 0.96833 0.89132 0.98056 1.74239 1.19958 1.21092 0.97613 1.74339 1.09691 1.01799 1.25565 1.24823 1.03770 1.01413 0.80499 1.19340 0.80398 0.89374 1.02030 1.45898 1.07520 1.16198 1.70309 1.18225 0.84955 0.84819 0.77135 1.90968 1.80169 1.18290 1.47587 1.18735 0.92075 0.94748 1.17632 1.20740 0.95824 0.93239 0.95783 1.20461 0.93666 0.99779 1.11026 1.20906 0.98303 0.92938 0.94660 1.21163 0.96472 0.97632 1.10333 1.19248 0.91349 0.85453 0.90948 1.84163 1.38654 1.16099 1.63180 1.21501 0.91551 0.96571 1.38319 0.88831 1.25388 0.97423 0.96690 0.96798 1.70122 1.17613 1.17759 1.40823 0.85724 0.79356 0.79486 0.78934 1.19752 1.20098 1.19035 1.46049 1.38361 1.23173 1.08114 1.22213 1.01479 0.97413 0.86599 0.92598 0.91104 0.91407 0.89727 0.92541 0.91088 0.91401 0.89836 0.88012 0.77114 0.87300 0.87280 0.87128 0.85005 0.91813 0.89587 0.88312 0.88890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.18 37.16 0.34 -0.59 16 2 C -0.01 -0.04 3.27 -91.77 -0.30 -0.34 16 3 C -0.14 -0.93 9.18 37.16 0.34 -0.59 16 4 C 0.18 1.98 6.54 -154.99 -1.01 0.96 16 5 N -0.29 -4.22 12.21 32.80 0.40 -3.82 16 6 N -0.27 -4.38 12.21 32.80 0.40 -3.98 16 7 C 0.16 2.20 7.40 -154.99 -1.15 1.05 16 8 C 0.21 3.12 5.84 -5.19 -0.03 3.09 16 9 N -0.74 -11.84 5.50 -62.53 -0.34 -12.19 16 10 C 0.56 11.87 7.76 -12.47 -0.10 11.77 16 11 O -0.50 -13.07 15.17 -16.57 -0.25 -13.32 16 12 C -0.23 -4.83 5.89 -104.81 -0.62 -5.44 16 13 C -0.04 -0.63 9.53 -39.20 -0.37 -1.00 16 14 C -0.23 -3.74 10.03 -39.60 -0.40 -4.14 16 15 C -0.05 -0.86 10.03 -39.53 -0.40 -1.26 16 16 C -0.24 -5.00 9.16 -39.44 -0.36 -5.36 16 17 C 0.19 4.63 6.66 -38.60 -0.26 4.37 16 18 O -0.12 -3.56 7.84 -21.04 -0.16 -3.72 16 19 C -0.40 -11.25 9.49 30.90 0.29 -10.96 16 20 H 0.09 2.36 5.21 -52.49 -0.27 2.09 16 21 C 0.04 1.24 5.49 -17.51 -0.10 1.14 16 22 N -0.83 -24.75 13.67 55.48 0.76 -23.99 16 23 Si 0.94 20.28 29.55 -169.99 -5.02 15.26 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 26 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 27 N -0.47 -4.94 3.15 -118.00 -0.37 -5.32 16 28 C 0.07 0.43 10.58 59.85 0.63 1.06 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.42 6.89 -51.93 -0.36 0.06 16 33 H 0.06 0.39 8.14 -51.94 -0.42 -0.03 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 1.13 7.87 -51.93 -0.41 0.72 16 37 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 38 H 0.39 5.48 6.49 -40.82 -0.27 5.21 16 39 H 0.11 1.49 6.40 -52.49 -0.34 1.15 16 40 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 41 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 42 H 0.13 2.74 5.64 -52.48 -0.30 2.45 16 43 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.10 0.69 7.82 -51.93 -0.41 0.28 16 46 H 0.09 0.38 7.18 -51.93 -0.37 0.01 16 LS Contribution 389.71 15.07 5.87 5.87 Total: -1.00 -36.58 389.71 -8.28 -44.86 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -6.08 Total: 6.57 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -3.48 Total: -6.22 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.84 Total: -49.29 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.42 Total: -17.05 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.58 -8.28 -44.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186542276.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.696 kcal (2) G-P(sol) polarization free energy of solvation -36.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds