Wall clock time and date at job start Wed Apr 1 2020 03:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47557 * 2 1 4 4 C 1.50707 * 109.46690 * 240.00074 * 2 1 3 5 5 N 1.30513 * 126.34725 * 60.02847 * 4 2 1 6 6 N 1.28597 * 109.67464 * 179.97438 * 5 4 2 7 7 C 1.30514 * 109.67017 * 359.97438 * 6 5 4 8 8 C 1.50711 * 126.34600 * 180.02562 * 7 6 5 9 9 N 1.46493 * 109.47026 * 90.02066 * 8 7 6 10 10 C 1.34773 * 120.00163 * 180.02562 * 9 8 7 11 11 O 1.21592 * 120.00018 * 359.97438 * 10 9 8 12 12 C 1.47535 * 120.00386 * 180.02562 * 10 9 8 13 13 C 1.39662 * 120.19541 * 0.02562 * 12 10 9 14 14 C 1.37830 * 119.91883 * 179.97438 * 13 12 10 15 15 C 1.38580 * 120.32371 * 0.02562 * 14 13 12 16 16 C 1.38025 * 120.39774 * 359.97438 * 15 14 13 17 17 C 1.38834 * 120.07630 * 359.74707 * 16 15 14 18 18 O 1.35516 * 120.16182 * 180.27243 * 17 16 15 19 19 C 1.34814 * 116.99980 * 354.40481 * 18 17 16 20 20 H 1.07992 * 120.00165 * 5.05815 * 19 18 17 21 21 C 1.38702 * 119.99522 * 185.06402 * 19 18 17 22 22 N 1.31518 * 120.00339 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99727 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47531 * 89.99565 * 23 21 19 25 25 H 1.48504 * 109.47084 * 209.99788 * 23 21 19 26 26 H 1.48503 * 109.46992 * 329.99645 * 23 21 19 27 27 N 1.35489 * 107.31094 * 359.77399 * 7 6 5 28 28 C 1.46505 * 126.98470 * 180.22970 * 27 7 6 29 29 H 1.08994 * 109.47327 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47119 * 59.99573 * 1 2 3 31 31 H 1.09005 * 109.46848 * 299.99916 * 1 2 3 32 32 H 1.08995 * 109.47119 * 120.00426 * 2 1 3 33 33 H 1.08989 * 109.47012 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.46578 * 300.00340 * 3 2 1 35 35 H 1.09001 * 109.47053 * 59.99677 * 3 2 1 36 36 H 1.08995 * 109.46662 * 210.02071 * 8 7 6 37 37 H 1.08996 * 109.46746 * 330.02213 * 8 7 6 38 38 H 0.97003 * 120.00544 * 0.02562 * 9 8 7 39 39 H 1.07996 * 120.04083 * 359.95320 * 13 12 10 40 40 H 1.07995 * 119.83830 * 179.97438 * 14 13 12 41 41 H 1.07996 * 119.79447 * 179.97438 * 15 14 13 42 42 H 1.08004 * 119.96157 * 180.02562 * 16 15 14 43 43 H 0.97003 * 119.99892 * 180.02562 * 22 21 19 44 44 H 1.08996 * 109.46955 * 270.15429 * 28 27 7 45 45 H 1.08996 * 109.47101 * 30.15650 * 28 27 7 46 46 H 1.09002 * 109.47028 * 150.15398 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 7 1.7949 -0.3740 -2.4690 6 7 2.3797 -1.2005 -3.2619 7 6 3.0171 -2.1014 -2.5652 8 6 3.8280 -3.2467 -3.1149 9 7 5.2182 -2.8199 -3.2919 10 6 6.1321 -3.6843 -3.7755 11 8 5.8030 -4.8186 -4.0644 12 6 7.5323 -3.2548 -3.9533 13 6 7.9154 -1.9534 -3.6213 14 6 9.2251 -1.5582 -3.7892 15 6 10.1655 -2.4462 -4.2869 16 6 9.8014 -3.7354 -4.6192 17 6 8.4880 -4.1527 -4.4513 18 8 8.1298 -5.4198 -4.7719 19 6 9.0677 -6.1914 -5.3572 20 1 10.0748 -5.8204 -5.4763 21 6 8.7388 -7.4617 -5.8067 22 7 7.5123 -7.9137 -5.6613 23 14 10.0380 -8.5305 -6.6184 24 1 10.7261 -9.3446 -5.5845 25 1 9.3917 -9.4301 -7.6075 26 1 11.0292 -7.6666 -7.3086 27 7 2.8193 -1.8131 -1.2562 28 6 3.3464 -2.5466 -0.1027 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 3.7911 -4.0848 -2.4191 37 1 3.4171 -3.5542 -4.0764 38 1 5.4810 -1.9151 -3.0611 39 1 7.1861 -1.2574 -3.2338 40 1 9.5197 -0.5515 -3.5325 41 1 11.1893 -2.1274 -4.4154 42 1 10.5402 -4.4218 -5.0061 43 1 7.2825 -8.8022 -5.9753 44 1 2.6405 -3.3253 0.1861 45 1 4.3011 -3.0014 -0.3667 46 1 3.4897 -1.8588 0.7307 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186542276.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:25 Heat of formation + Delta-G solvation = 18.349133 kcal Electronic energy + Delta-G solvation = -29411.695767 eV Core-core repulsion = 25302.841712 eV Total energy + Delta-G solvation = -4108.854056 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.34710 -41.31550 -39.86494 -38.05017 -36.89784 -36.45644 -35.44077 -34.31931 -32.60594 -31.14426 -30.58460 -28.67212 -28.06308 -27.84334 -27.22726 -24.55040 -24.51086 -23.13552 -22.11635 -21.60473 -20.93514 -19.86473 -19.41132 -18.13282 -17.89066 -17.65199 -16.92520 -16.55069 -16.37287 -16.01466 -15.94298 -15.90140 -15.36417 -15.32851 -15.28230 -14.68694 -14.45839 -14.35475 -14.20879 -14.07490 -13.95324 -13.65511 -13.54644 -13.02151 -12.99753 -12.79628 -12.71786 -12.53491 -12.42120 -12.35521 -12.19404 -12.12572 -12.05348 -11.46525 -11.38465 -11.22678 -10.82981 -10.80858 -10.29103 -10.22295 -9.83528 -9.05433 -8.44265 -6.14828 0.08926 0.52023 0.70933 1.33659 1.33915 1.44686 1.52351 1.60409 2.03177 2.16239 2.30021 2.86991 2.97942 3.20600 3.25337 3.44647 3.63962 3.70133 3.88491 4.01294 4.04984 4.11256 4.23430 4.25831 4.30665 4.37988 4.50255 4.55288 4.60013 4.63741 4.73897 4.81326 4.93683 4.94734 4.95086 4.97209 5.06716 5.07837 5.11815 5.26114 5.33750 5.41127 5.45839 5.58770 5.68183 5.76936 5.96011 6.14161 6.49712 6.95277 7.34529 7.58632 7.79406 8.75974 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.017368 B = 0.002427 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.801413 B =11532.954047 C =12636.247143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.005 4.005 3 C -0.139 4.139 4 C 0.195 3.805 5 N -0.327 5.327 6 N -0.311 5.311 7 C 0.157 3.843 8 C 0.221 3.779 9 N -0.715 5.715 10 C 0.557 3.443 11 O -0.558 6.558 12 C -0.242 4.242 13 C -0.030 4.030 14 C -0.201 4.201 15 C -0.038 4.038 16 C -0.256 4.256 17 C 0.152 3.848 18 O -0.185 6.185 19 C -0.427 4.427 20 H 0.107 0.893 21 C -0.021 4.021 22 N -0.903 5.903 23 Si 1.020 2.980 24 H -0.261 1.261 25 H -0.274 1.274 26 H -0.249 1.249 27 N -0.459 5.459 28 C 0.055 3.945 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.095 0.905 32 H 0.118 0.882 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.408 0.592 39 H 0.150 0.850 40 H 0.161 0.839 41 H 0.155 0.845 42 H 0.125 0.875 43 H 0.271 0.729 44 H 0.102 0.898 45 H 0.093 0.907 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.709 17.637 17.220 25.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.026 4.026 3 C -0.197 4.197 4 C -0.074 4.074 5 N -0.168 5.168 6 N -0.153 5.153 7 C -0.112 4.112 8 C 0.095 3.905 9 N -0.372 5.372 10 C 0.348 3.652 11 O -0.436 6.436 12 C -0.247 4.247 13 C -0.049 4.049 14 C -0.219 4.219 15 C -0.056 4.056 16 C -0.275 4.275 17 C 0.097 3.903 18 O -0.088 6.088 19 C -0.503 4.503 20 H 0.125 0.875 21 C -0.220 4.220 22 N -0.539 5.539 23 Si 0.839 3.161 24 H -0.185 1.185 25 H -0.199 1.199 26 H -0.172 1.172 27 N -0.149 5.149 28 C -0.086 4.086 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.114 0.886 32 H 0.136 0.864 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.245 0.755 39 H 0.168 0.832 40 H 0.179 0.821 41 H 0.172 0.828 42 H 0.143 0.857 43 H 0.080 0.920 44 H 0.120 0.880 45 H 0.112 0.888 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.835 17.202 15.822 24.351 hybrid contribution 0.841 -1.400 0.221 1.648 sum -5.994 15.802 16.043 23.302 Atomic orbital electron populations 1.21799 0.92149 1.02268 1.03529 1.19921 0.97232 0.96091 0.89362 1.21801 1.01050 0.93349 1.03515 1.25610 0.95032 0.88392 0.98325 1.74166 1.21436 1.21957 0.99195 1.74247 1.10830 1.02920 1.27274 1.24347 1.04026 1.00897 0.81908 1.19208 0.79448 0.90372 1.01487 1.45582 1.07429 1.15912 1.68275 1.18420 0.85828 0.84415 0.76550 1.90955 1.81167 1.21056 1.50403 1.19147 0.91727 0.96237 1.17594 1.21208 0.97604 0.91648 0.94417 1.21144 0.92474 1.01482 1.06843 1.21431 1.00824 0.91032 0.92298 1.21314 0.95105 0.99620 1.11432 1.20026 0.93583 0.85171 0.91542 1.84168 1.39798 1.18260 1.66546 1.22027 0.92242 0.97240 1.38747 0.87532 1.26724 0.99886 0.98062 0.97353 1.70308 1.20599 1.18501 1.44495 0.84580 0.76304 0.77309 0.77909 1.18541 1.19897 1.17218 1.46224 1.37731 1.23001 1.07906 1.22603 1.01505 0.98482 0.85966 0.93061 0.93155 0.88625 0.86388 0.92714 0.93150 0.88686 0.88850 0.90108 0.75479 0.83214 0.82114 0.82785 0.85692 0.92003 0.87969 0.88820 0.85478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.18 71.98 0.66 -0.83 16 2 C -0.01 -0.06 3.27 -11.54 -0.04 -0.10 16 3 C -0.14 -1.41 9.18 71.98 0.66 -0.75 16 4 C 0.19 3.96 6.54 137.98 0.90 4.86 16 5 N -0.33 -9.51 12.21 -50.15 -0.61 -10.12 16 6 N -0.31 -10.13 12.21 -50.15 -0.61 -10.74 16 7 C 0.16 4.23 7.40 137.98 1.02 5.25 16 8 C 0.22 6.64 5.84 85.64 0.50 7.14 16 9 N -0.72 -22.87 5.50 -470.01 -2.58 -25.46 16 10 C 0.56 24.58 7.76 86.70 0.67 25.26 16 11 O -0.56 -31.66 15.17 16.89 0.26 -31.40 16 12 C -0.24 -10.32 5.89 -19.99 -0.12 -10.44 16 13 C -0.03 -0.92 9.53 22.52 0.21 -0.70 16 14 C -0.20 -5.37 10.03 22.25 0.22 -5.14 16 15 C -0.04 -1.15 10.03 22.30 0.22 -0.93 16 16 C -0.26 -10.69 9.16 22.36 0.20 -10.48 16 17 C 0.15 7.68 6.66 22.91 0.15 7.84 16 18 O -0.19 -11.55 7.84 0.88 0.01 -11.54 16 19 C -0.43 -25.38 9.49 67.93 0.64 -24.73 16 20 H 0.11 5.67 5.21 -2.91 -0.02 5.66 16 21 C -0.02 -1.22 5.49 84.85 0.47 -0.75 16 22 N -0.90 -58.25 13.67 21.62 0.30 -57.96 16 23 Si 1.02 43.67 29.55 68.60 2.03 45.69 16 24 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 25 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 26 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 27 N -0.46 -8.90 3.15 -527.23 -1.66 -10.56 16 28 C 0.06 0.56 10.58 127.77 1.35 1.91 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.12 0.56 6.89 -2.39 -0.02 0.55 16 33 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.09 2.63 7.87 -2.39 -0.02 2.61 16 37 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 38 H 0.41 10.60 6.49 -92.71 -0.60 10.00 16 39 H 0.15 3.30 6.40 -2.91 -0.02 3.28 16 40 H 0.16 2.86 8.06 -2.91 -0.02 2.83 16 41 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 42 H 0.13 5.29 5.64 -2.91 -0.02 5.27 16 43 H 0.27 16.01 8.31 -92.71 -0.77 15.23 16 44 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.09 1.10 7.82 -2.39 -0.02 1.08 16 46 H 0.13 0.44 7.18 -2.39 -0.02 0.42 16 Total: -1.00 -92.13 389.71 5.28 -86.84 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 0.42 Total: 27.85 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 7.74 Total: -2.59 kcal Atomic # 7 Polarization: -109.67 SS G_CDS: -5.17 Total: -114.85 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: 0.26 Total: -42.94 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -92.13 5.28 -86.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186542276.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.194 kcal (2) G-P(sol) polarization free energy of solvation -92.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds