Wall clock time and date at job start Wed Apr 1 2020 04:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47512 * 2 1 4 4 C 1.53004 * 109.47052 * 120.00402 * 2 1 3 5 5 C 1.52998 * 109.47357 * 64.99537 * 4 2 1 6 6 N 1.46500 * 109.46745 * 179.97438 * 5 4 2 7 7 C 1.46503 * 120.00194 * 269.99708 * 6 5 4 8 8 C 1.50697 * 109.47491 * 264.32715 * 7 6 5 9 9 H 1.07998 * 119.99683 * 359.97438 * 8 7 6 10 10 C 1.37870 * 120.00400 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99672 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00373 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47001 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46884 * 120.00062 * 12 10 8 15 15 H 1.48498 * 109.47218 * 240.00044 * 12 10 8 16 16 C 1.34778 * 119.99873 * 90.00694 * 6 5 4 17 17 O 1.21358 * 119.99646 * 354.58116 * 16 6 5 18 18 C 1.49370 * 119.99907 * 174.58586 * 16 6 5 19 19 O 1.21350 * 120.00335 * 358.20399 * 18 16 6 20 20 N 1.34779 * 119.99830 * 178.20597 * 18 16 6 21 21 C 1.38918 * 120.00181 * 184.08234 * 20 18 16 22 22 C 1.39291 * 119.53743 * 174.62404 * 21 20 18 23 23 C 1.37956 * 119.25696 * 180.02562 * 22 21 20 24 24 C 1.40307 * 118.36544 * 0.02562 * 23 22 21 25 25 C 1.43196 * 120.49026 * 179.97438 * 24 23 22 26 26 N 9.76930 * 147.75807 * 129.18152 * 6 1 2 27 27 C 1.39593 * 119.01826 * 359.97438 * 24 23 22 28 28 N 1.31650 * 120.63682 * 0.02562 * 27 24 23 29 29 H 1.08999 * 109.47164 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47034 * 300.00222 * 1 2 3 31 31 H 1.09000 * 109.46891 * 59.99962 * 1 2 3 32 32 H 1.09008 * 109.47053 * 240.00159 * 2 1 3 33 33 H 1.08998 * 109.47309 * 180.02562 * 3 2 1 34 34 H 1.09010 * 109.46992 * 299.99908 * 3 2 1 35 35 H 1.08996 * 109.47152 * 59.99850 * 3 2 1 36 36 H 1.08997 * 109.46691 * 304.99478 * 4 2 1 37 37 H 1.08998 * 109.46825 * 185.00210 * 4 2 1 38 38 H 1.09002 * 109.46684 * 60.00687 * 5 4 2 39 39 H 1.08997 * 109.47076 * 300.00556 * 5 4 2 40 40 H 1.09003 * 109.46525 * 24.32927 * 7 6 5 41 41 H 1.08995 * 109.46718 * 144.32235 * 7 6 5 42 42 H 0.97001 * 120.00295 * 179.97438 * 11 10 8 43 43 H 0.97006 * 119.99819 * 4.09030 * 20 18 16 44 44 H 1.08001 * 120.37286 * 0.05194 * 22 21 20 45 45 H 1.08001 * 120.81575 * 179.72855 * 23 22 21 46 46 H 1.07997 * 119.68619 * 180.02562 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6352 -2.1955 1.1880 6 7 2.1241 -2.8862 2.3838 7 6 3.4523 -3.5043 2.3812 8 6 3.3248 -4.9677 2.0449 9 1 2.3517 -5.3948 1.8527 10 6 4.4503 -5.7617 1.9835 11 7 5.6353 -5.2417 2.2180 12 14 4.2922 -7.5758 1.5673 13 1 2.8621 -7.9105 1.3483 14 1 5.0636 -7.8694 0.3328 15 1 4.8253 -8.3894 2.6894 16 6 1.3518 -2.9532 3.4864 17 8 0.2944 -2.3588 3.5235 18 6 1.7975 -3.7588 4.6626 19 8 2.8392 -4.3794 4.6134 20 7 1.0427 -3.7966 5.7785 21 6 1.4971 -4.4759 6.9018 22 6 0.7636 -4.4152 8.0844 23 6 1.2205 -5.0916 9.1966 24 6 2.4157 -5.8188 9.0902 25 6 2.9317 -6.5372 10.2163 26 7 3.3380 -7.1074 11.1101 27 6 3.0943 -5.8316 7.8704 28 7 2.6226 -5.1718 6.8334 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8901 35 1 1.6768 1.9563 0.8899 36 1 1.6054 -0.2618 2.1369 37 1 3.1263 -0.6444 1.2951 38 1 2.0699 -2.6550 0.3002 39 1 0.5489 -2.2724 1.1420 40 1 4.0798 -3.0138 1.6371 41 1 3.9053 -3.3961 3.3667 42 1 6.4272 -5.8002 2.1752 43 1 0.1820 -3.3495 5.7972 44 1 -0.1527 -3.8454 8.1301 45 1 0.6741 -5.0583 10.1276 46 1 4.0150 -6.3881 7.7764 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294563970.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:14 Heat of formation + Delta-G solvation = -5.119066 kcal Electronic energy + Delta-G solvation = -29714.242031 eV Core-core repulsion = 25604.370318 eV Total energy + Delta-G solvation = -4109.871713 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.18797 -41.10330 -39.44702 -37.93108 -37.73155 -36.69854 -35.61868 -34.42281 -33.62860 -31.59082 -30.78991 -28.92915 -27.95492 -26.88180 -25.09876 -24.97224 -24.92121 -22.91689 -20.92596 -20.76752 -20.08792 -19.30509 -18.63284 -18.44242 -17.55810 -17.24599 -16.85908 -16.48333 -16.11295 -15.99017 -15.69992 -15.47140 -15.15977 -15.02169 -14.94664 -14.49997 -14.46129 -14.29233 -14.15188 -14.01246 -13.98221 -13.69091 -13.53358 -13.24588 -13.08577 -12.85880 -12.76798 -12.67358 -12.35980 -12.21557 -11.93246 -11.88738 -11.78754 -11.52983 -11.48717 -11.38311 -10.94785 -10.80096 -10.49495 -9.87223 -9.59237 -9.35848 -8.11179 -6.18410 -0.49002 0.29184 0.61461 1.32098 1.38429 1.41815 1.50361 1.59459 1.90495 2.34384 2.40296 2.53157 2.83379 2.93891 3.23986 3.24836 3.61468 3.80561 3.88869 3.96230 3.97709 4.10433 4.15739 4.32154 4.57433 4.64384 4.68910 4.77068 4.77972 4.85040 4.92412 4.95249 4.98945 5.07801 5.09537 5.16595 5.17609 5.33101 5.37776 5.49155 5.51909 5.58098 5.67507 5.78654 5.94319 6.13834 6.32687 6.41819 6.69414 6.85352 7.04292 7.21941 7.47615 8.97356 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009222 B = 0.003426 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3035.574361 B = 8170.046182 C =10529.646805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C -0.142 4.142 4 C -0.118 4.118 5 C 0.114 3.886 6 N -0.565 5.565 7 C 0.252 3.748 8 C -0.512 4.512 9 H 0.044 0.956 10 C 0.026 3.974 11 N -0.920 5.920 12 Si 0.947 3.053 13 H -0.273 1.273 14 H -0.275 1.275 15 H -0.286 1.286 16 C 0.505 3.495 17 O -0.554 6.554 18 C 0.472 3.528 19 O -0.416 6.416 20 N -0.632 5.632 21 C 0.373 3.627 22 C -0.185 4.185 23 C 0.020 3.980 24 C -0.121 4.121 25 C 0.292 3.708 26 N -0.462 5.462 27 C 0.182 3.818 28 N -0.523 5.523 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.019 0.981 41 H 0.040 0.960 42 H 0.262 0.738 43 H 0.439 0.561 44 H 0.191 0.809 45 H 0.190 0.810 46 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.061 8.868 6.175 16.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.200 4.200 4 C -0.157 4.157 5 C -0.008 4.008 6 N -0.295 5.295 7 C 0.131 3.869 8 C -0.551 4.551 9 H 0.062 0.938 10 C -0.173 4.173 11 N -0.560 5.560 12 Si 0.774 3.226 13 H -0.197 1.197 14 H -0.201 1.201 15 H -0.213 1.213 16 C 0.288 3.712 17 O -0.435 6.435 18 C 0.251 3.749 19 O -0.279 6.279 20 N -0.282 5.282 21 C 0.141 3.859 22 C -0.208 4.208 23 C -0.008 4.008 24 C -0.129 4.129 25 C -0.023 4.023 26 N -0.139 5.139 27 C 0.020 3.980 28 N -0.238 5.238 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.037 0.963 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.281 0.719 44 H 0.208 0.792 45 H 0.207 0.793 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -11.545 7.851 6.556 15.425 hybrid contribution -0.259 -0.876 0.028 0.913 sum -11.804 6.976 6.584 15.210 Atomic orbital electron populations 1.21852 0.94472 1.01760 1.02067 1.21053 0.96513 0.96630 0.96847 1.21795 1.00828 0.95083 1.02255 1.21903 1.00577 0.94001 0.99202 1.21749 1.00259 0.92515 0.86290 1.48240 1.18219 1.50966 1.12052 1.19392 0.77648 0.91899 0.97929 1.21343 0.92580 0.94652 1.46532 0.93796 1.25438 0.94939 1.01781 0.95166 1.70012 0.98443 1.37127 1.50462 0.85679 0.77993 0.81284 0.77652 1.19722 1.20091 1.21259 1.19910 0.84580 0.82160 0.84593 1.90636 1.23478 1.46863 1.82557 1.20630 0.85642 0.83933 0.84663 1.91108 1.21032 1.36637 1.79151 1.43223 1.23399 1.51720 1.09821 1.19103 0.90275 0.89435 0.87046 1.21761 1.03826 1.05389 0.89846 1.21768 0.90890 0.88399 0.99718 1.16931 1.00240 1.05738 0.89987 1.25330 0.92530 0.92213 0.92194 1.81260 1.09517 1.11194 1.11905 1.22916 0.97800 0.91736 0.85566 1.67744 1.13818 1.10408 1.31828 0.93088 0.92956 0.91330 0.90761 0.93011 0.91254 0.92767 0.92443 0.92760 0.90249 0.89756 0.96279 0.94274 0.92920 0.71921 0.79178 0.79294 0.81761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.95 71.98 0.64 -2.31 16 2 C -0.09 -2.05 2.92 -10.79 -0.03 -2.08 16 3 C -0.14 -2.74 9.19 71.98 0.66 -2.07 16 4 C -0.12 -3.42 5.01 30.60 0.15 -3.27 16 5 C 0.11 3.85 5.10 86.38 0.44 4.29 16 6 N -0.57 -23.31 2.47 -827.83 -2.05 -25.36 16 7 C 0.25 12.54 4.76 85.63 0.41 12.94 16 8 C -0.51 -27.93 7.79 25.60 0.20 -27.73 16 9 H 0.04 2.43 7.81 -2.91 -0.02 2.41 16 10 C 0.03 1.46 5.46 84.65 0.46 1.93 16 11 N -0.92 -53.99 13.29 21.44 0.28 -53.70 16 12 Si 0.95 44.88 29.54 68.60 2.03 46.91 16 13 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 14 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 15 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 16 C 0.51 19.78 7.67 87.24 0.67 20.45 16 17 O -0.55 -20.45 16.12 -3.27 -0.05 -20.51 16 18 C 0.47 18.33 7.68 87.24 0.67 19.00 16 19 O -0.42 -19.86 10.37 -3.25 -0.03 -19.89 16 20 N -0.63 -17.68 5.36 -309.80 -1.66 -19.34 16 21 C 0.37 9.64 7.41 133.10 0.99 10.63 16 22 C -0.19 -2.64 9.92 22.46 0.22 -2.41 16 23 C 0.02 0.24 9.90 22.71 0.22 0.47 16 24 C -0.12 -2.31 5.75 -21.20 -0.12 -2.43 16 25 C 0.29 6.30 15.36 88.34 1.36 7.66 16 26 N -0.46 -12.17 18.53 18.99 0.35 -11.82 16 27 C 0.18 4.72 10.91 85.05 0.93 5.65 16 28 N -0.52 -17.19 7.84 -192.10 -1.51 -18.70 16 29 H 0.05 1.11 6.57 -2.39 -0.02 1.10 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 32 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.06 1.73 8.14 -2.39 -0.02 1.72 16 37 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.08 2.72 8.07 -2.39 -0.02 2.70 16 39 H 0.08 2.73 5.93 -2.39 -0.01 2.71 16 40 H 0.02 1.00 8.03 -2.39 -0.02 0.98 16 41 H 0.04 2.17 5.86 -2.39 -0.01 2.16 16 42 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 43 H 0.44 9.10 8.16 -92.70 -0.76 8.35 16 44 H 0.19 1.07 8.06 -2.91 -0.02 1.04 16 45 H 0.19 0.81 8.06 -2.91 -0.02 0.79 16 46 H 0.17 4.08 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -73.44 396.65 5.50 -67.94 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.26 Total: 13.77 kcal Atomic # 6 Polarization: 32.83 SS G_CDS: 7.87 Total: 40.70 kcal Atomic # 7 Polarization: -124.34 SS G_CDS: -4.58 Total: -128.92 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: -0.09 Total: -40.40 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -73.44 5.50 -67.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294563970.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.824 kcal (2) G-P(sol) polarization free energy of solvation -73.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds