Wall clock time and date at job start Wed Apr 1 2020 03:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47432 * 2 1 4 4 C 1.53001 * 109.47277 * 120.00480 * 2 1 3 5 5 C 1.50698 * 109.46846 * 300.00123 * 4 2 1 6 6 N 1.30112 * 124.94930 * 304.96833 * 5 4 2 7 7 C 1.35785 * 109.64631 * 180.02562 * 6 5 4 8 8 C 1.39735 * 133.60204 * 179.97438 * 7 6 5 9 9 C 1.36605 * 119.88505 * 180.02562 * 8 7 6 10 10 C 1.38772 * 120.67413 * 359.97438 * 9 8 7 11 11 C 1.37857 * 120.44773 * 359.97248 * 10 9 8 12 12 C 1.38836 * 119.69151 * 0.06034 * 11 10 9 13 13 N 1.36038 * 124.95255 * 124.99978 * 5 4 2 14 14 H 0.96999 * 126.35202 * 359.97261 * 13 5 4 15 15 C 1.50703 * 109.47140 * 240.00020 * 2 1 3 16 16 O 1.21281 * 120.00561 * 240.00524 * 15 2 1 17 17 N 1.34785 * 119.99713 * 60.00271 * 15 2 1 18 18 C 1.46497 * 119.99674 * 179.97438 * 17 15 2 19 19 C 1.50699 * 109.46732 * 179.97438 * 18 17 15 20 20 O 1.21287 * 120.00439 * 0.02562 * 19 18 17 21 21 N 1.34783 * 119.99953 * 180.02562 * 19 18 17 22 22 C 1.37090 * 120.00077 * 179.97438 * 21 19 18 23 23 H 1.08003 * 120.00440 * 0.02562 * 22 21 19 24 24 C 1.38952 * 119.99955 * 179.97438 * 22 21 19 25 25 N 1.31415 * 120.00182 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99940 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47296 * 0.02562 * 26 24 22 28 28 H 1.48496 * 109.46853 * 120.00510 * 26 24 22 29 29 H 1.48503 * 109.47270 * 240.00362 * 26 24 22 30 30 H 1.09000 * 109.46881 * 300.00142 * 1 2 3 31 31 H 1.09004 * 109.46885 * 59.99613 * 1 2 3 32 32 H 1.09001 * 109.47231 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.46857 * 179.97438 * 3 2 1 34 34 H 1.08990 * 109.47592 * 300.00236 * 3 2 1 35 35 H 1.09003 * 109.46489 * 60.00119 * 3 2 1 36 36 H 1.08995 * 109.47881 * 179.97438 * 4 2 1 37 37 H 1.09004 * 109.46949 * 59.99021 * 4 2 1 38 38 H 1.08000 * 120.05646 * 359.97438 * 8 7 6 39 39 H 1.07999 * 119.66329 * 179.72373 * 9 8 7 40 40 H 1.07998 * 119.77865 * 180.02562 * 10 9 8 41 41 H 1.07997 * 120.15633 * 180.02562 * 11 10 9 42 42 H 0.97000 * 119.99965 * 0.02562 * 17 15 2 43 43 H 1.09000 * 109.47536 * 300.00197 * 18 17 15 44 44 H 1.09001 * 109.47318 * 60.00012 * 18 17 15 45 45 H 0.97004 * 119.99310 * 359.97438 * 21 19 18 46 46 H 0.96993 * 120.00172 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5376 -0.0110 2.4796 6 7 1.7146 1.2524 2.7354 7 6 1.1355 1.5631 3.9236 8 6 1.0251 2.7441 4.6622 9 6 0.3634 2.7402 5.8573 10 6 -0.2035 1.5728 6.3488 11 6 -0.1079 0.3962 5.6368 12 6 0.5614 0.3808 4.4206 13 7 0.8336 -0.5974 3.4852 14 1 0.5708 -1.5298 3.5354 15 6 2.0323 -0.7104 -1.2305 16 8 2.7295 -1.6966 -1.1193 17 7 1.7067 -0.2498 -2.4546 18 6 2.1955 -0.9401 -3.6508 19 6 1.6926 -0.2300 -4.8812 20 8 0.9949 0.7559 -4.7699 21 7 2.0180 -0.6906 -6.1054 22 6 1.5601 -0.0449 -7.2247 23 1 0.9389 0.8330 -7.1256 24 6 1.8961 -0.5194 -8.4867 25 7 2.6524 -1.5873 -8.6074 26 14 1.2715 0.3599 -10.0119 27 1 0.4453 1.5258 -9.6077 28 1 2.4255 0.8281 -10.8208 29 1 0.4475 -0.5749 -10.8198 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1300 1.4423 0.0005 34 1 1.6768 1.9563 -0.8899 35 1 1.6767 1.9562 0.8901 36 1 3.1300 -0.7218 1.2490 37 1 1.6765 -1.7490 1.2492 38 1 1.4629 3.6583 4.2893 39 1 0.2841 3.6541 6.4273 40 1 -0.7237 1.5863 7.2951 41 1 -0.5512 -0.5095 6.0236 42 1 1.1494 0.5391 -2.5436 43 1 3.2855 -0.9398 -3.6506 44 1 1.8326 -1.9679 -3.6510 45 1 2.5763 -1.4789 -6.1943 46 1 2.8866 -1.9187 -9.4883 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344168097.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:54 Heat of formation + Delta-G solvation = -12.131913 kcal Electronic energy + Delta-G solvation = -28915.567354 eV Core-core repulsion = 24805.391541 eV Total energy + Delta-G solvation = -4110.175813 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.50916 -40.11134 -38.31275 -37.70977 -35.69530 -34.50529 -33.70632 -33.41738 -31.39728 -30.48275 -30.12267 -27.88601 -27.35615 -27.22804 -24.69816 -23.33445 -22.66441 -22.04750 -20.98125 -19.70501 -19.14206 -18.13035 -17.98201 -17.57729 -16.90378 -16.10186 -15.71318 -15.50252 -15.32965 -15.22295 -14.65172 -14.54159 -14.37236 -14.19038 -14.09523 -13.93007 -13.50793 -13.35636 -13.00433 -12.43672 -12.38980 -12.31020 -12.19481 -12.14678 -11.91558 -11.78392 -11.66572 -11.64244 -11.17189 -11.15511 -11.07511 -10.86406 -10.41762 -10.33577 -10.07675 -9.65992 -9.51024 -8.81374 -8.67314 -8.64491 -8.39095 -8.11401 -6.52781 -3.94716 0.65245 1.22019 2.44460 2.54865 2.78269 3.09482 3.21482 3.26954 3.35082 3.59306 3.72603 3.83269 4.10380 4.27900 4.48640 4.64920 4.69010 4.74172 4.84789 4.86535 5.04347 5.09093 5.12368 5.14916 5.15806 5.34330 5.47374 5.52480 5.60596 5.71855 5.76059 5.84358 5.88151 5.94133 5.98934 6.04335 6.06105 6.12043 6.19755 6.21401 6.50437 6.60406 6.65566 7.02803 7.45164 7.62252 7.77525 7.90944 8.38996 8.44647 9.03542 9.37949 9.85746 10.64134 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.031423 B = 0.001769 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.848468 B =15824.712057 C =16281.877583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.068 4.068 3 C -0.155 4.155 4 C -0.022 4.022 5 C 0.301 3.699 6 N -0.482 5.482 7 C 0.048 3.952 8 C -0.065 4.065 9 C -0.130 4.130 10 C -0.106 4.106 11 C -0.111 4.111 12 C 0.044 3.956 13 N -0.598 5.598 14 H 0.423 0.577 15 C 0.524 3.476 16 O -0.552 6.552 17 N -0.701 5.701 18 C 0.108 3.892 19 C 0.428 3.572 20 O -0.596 6.596 21 N -0.549 5.549 22 C -0.305 4.305 23 H 0.106 0.894 24 C 0.025 3.975 25 N -0.894 5.894 26 Si 0.932 3.068 27 H -0.267 1.267 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.121 0.879 42 H 0.412 0.588 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.396 0.604 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.132 1.901 27.677 28.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.072 4.072 3 C -0.212 4.212 4 C -0.061 4.061 5 C 0.034 3.966 6 N -0.203 5.203 7 C -0.070 4.070 8 C -0.084 4.084 9 C -0.150 4.150 10 C -0.125 4.125 11 C -0.132 4.132 12 C -0.066 4.066 13 N -0.209 5.209 14 H 0.261 0.739 15 C 0.309 3.691 16 O -0.431 6.431 17 N -0.355 5.355 18 C -0.020 4.020 19 C 0.213 3.787 20 O -0.483 6.483 21 N -0.184 5.184 22 C -0.434 4.434 23 H 0.124 0.876 24 C -0.177 4.177 25 N -0.535 5.535 26 Si 0.759 3.241 27 H -0.191 1.191 28 H -0.206 1.206 29 H -0.206 1.206 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.110 0.890 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.139 0.861 42 H 0.250 0.750 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.229 0.771 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.589 2.400 27.105 27.447 hybrid contribution -0.711 -0.952 -0.475 1.279 sum -4.300 1.448 26.630 27.014 Atomic orbital electron populations 1.21911 0.92395 1.02475 1.03262 1.20581 0.97284 0.97767 0.91558 1.22210 1.01770 0.92651 1.04589 1.20085 1.02661 0.97581 0.85782 1.23527 0.92850 0.89149 0.91078 1.70441 1.24252 1.11343 1.14249 1.19187 1.00729 0.93703 0.93411 1.20054 0.98753 0.95860 0.93736 1.20651 0.99613 0.98523 0.96221 1.20872 1.00069 0.91916 0.99659 1.19959 1.01566 0.99228 0.92491 1.18896 1.03867 0.89958 0.93891 1.43112 1.47875 1.11705 1.18204 0.73861 1.20288 0.80186 0.84219 0.84409 1.90678 1.38698 1.26682 1.86995 1.45679 1.52992 1.32363 1.04450 1.20970 0.99972 0.96565 0.84471 1.19748 0.86666 0.87705 0.84545 1.90499 1.43024 1.28745 1.86037 1.41805 1.44972 1.27439 1.04184 1.19784 1.29560 1.11126 0.82927 0.87604 1.25329 0.96578 0.96373 0.99456 1.69621 1.35962 1.22584 1.25293 0.85757 0.78551 0.79249 0.80532 1.19127 1.20607 1.20626 0.91768 0.91101 0.92181 0.92164 0.92262 0.87824 0.87483 0.89018 0.85304 0.85437 0.85406 0.86100 0.74970 0.89781 0.89851 0.77051 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.12 37.16 0.30 -1.21 16 2 C -0.07 -0.79 0.64 -155.66 -0.10 -0.89 16 3 C -0.15 -1.83 7.95 37.16 0.30 -1.54 16 4 C -0.02 -0.22 4.20 -27.88 -0.12 -0.34 16 5 C 0.30 3.09 6.06 -154.82 -0.94 2.15 16 6 N -0.48 -5.77 8.27 -8.23 -0.07 -5.84 16 7 C 0.05 0.54 7.23 -84.70 -0.61 -0.07 16 8 C -0.06 -0.61 10.05 -39.61 -0.40 -1.00 16 9 C -0.13 -0.95 9.96 -39.97 -0.40 -1.35 16 10 C -0.11 -0.72 10.03 -39.52 -0.40 -1.12 16 11 C -0.11 -0.85 10.07 -39.50 -0.40 -1.25 16 12 C 0.04 0.42 7.31 -83.98 -0.61 -0.19 16 13 N -0.60 -5.01 6.23 -8.00 -0.05 -5.06 16 14 H 0.42 2.25 8.96 -40.82 -0.37 1.88 16 15 C 0.52 7.83 6.48 -10.98 -0.07 7.76 16 16 O -0.55 -9.60 15.98 5.56 0.09 -9.51 16 17 N -0.70 -11.40 5.31 -61.47 -0.33 -11.73 16 18 C 0.11 1.95 6.15 -5.20 -0.03 1.92 16 19 C 0.43 9.70 7.85 -10.98 -0.09 9.61 16 20 O -0.60 -15.12 15.24 5.55 0.08 -15.03 16 21 N -0.55 -13.51 5.29 -10.96 -0.06 -13.56 16 22 C -0.30 -8.23 9.68 -14.94 -0.14 -8.38 16 23 H 0.11 2.99 7.16 -52.48 -0.38 2.61 16 24 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 25 N -0.89 -23.75 13.05 55.50 0.72 -23.02 16 26 Si 0.93 20.46 29.55 -169.99 -5.02 15.44 16 27 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 28 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 29 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 30 H 0.06 0.66 7.22 -51.93 -0.37 0.29 16 31 H 0.07 0.78 7.57 -51.93 -0.39 0.39 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.71 7.56 -51.93 -0.39 0.32 16 35 H 0.10 1.25 5.28 -51.93 -0.27 0.98 16 36 H 0.11 1.15 8.10 -51.93 -0.42 0.73 16 37 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 38 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 41 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.41 6.71 6.27 -40.82 -0.26 6.46 16 43 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 44 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 45 H 0.40 9.35 7.90 -40.82 -0.32 9.03 16 46 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 384.76 15.07 5.80 5.80 Total: -1.00 -32.57 384.76 -8.75 -41.32 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: -6.11 Total: 16.55 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -3.80 Total: 4.67 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: 0.22 Total: -59.22 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: 0.17 Total: -24.55 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.57 -8.75 -41.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344168097.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.185 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds