Wall clock time and date at job start Wed Apr 1 2020 03:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50708 * 109.46808 * 2 1 4 4 C 1.38315 * 119.87682 * 90.00266 * 3 2 1 5 5 C 1.38021 * 120.11758 * 179.97438 * 4 3 2 6 6 C 1.39331 * 119.87872 * 0.02562 * 5 4 3 7 7 C 1.48425 * 120.11868 * 179.97438 * 6 5 4 8 8 N 1.30759 * 126.41457 * 0.02562 * 7 6 5 9 9 O 1.21293 * 110.09597 * 179.97438 * 8 7 6 10 10 C 1.33668 * 110.02851 * 0.02562 * 9 8 7 11 11 C 1.50694 * 126.43726 * 179.97438 * 10 9 8 12 12 H 1.09003 * 109.47058 * 194.97578 * 11 10 9 13 13 C 1.52998 * 109.47434 * 74.97394 * 11 10 9 14 14 N 1.46903 * 109.47155 * 314.97351 * 11 10 9 15 15 C 1.46902 * 111.00129 * 205.00077 * 14 11 10 16 16 C 1.50698 * 109.47203 * 180.02562 * 15 14 11 17 17 O 1.21292 * 119.99964 * 359.97438 * 16 15 14 18 18 N 1.34774 * 119.99982 * 180.02562 * 16 15 14 19 19 C 1.37102 * 119.99914 * 179.97438 * 18 16 15 20 20 H 1.07996 * 119.99986 * 0.02562 * 19 18 16 21 21 C 1.38949 * 119.99539 * 179.97438 * 19 18 16 22 22 N 1.31405 * 120.00500 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99763 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46720 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47096 * 119.99684 * 23 21 19 26 26 H 1.48500 * 109.47118 * 240.00275 * 23 21 19 27 27 N 1.30975 * 107.12408 * 359.97438 * 10 9 8 28 28 C 1.39330 * 119.76071 * 0.24605 * 6 5 4 29 29 C 1.38017 * 119.87469 * 359.51953 * 28 6 5 30 30 H 1.09001 * 109.46929 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46892 * 299.99400 * 1 2 3 32 32 H 1.08989 * 109.47464 * 60.00162 * 1 2 3 33 33 H 1.08998 * 109.46892 * 240.00600 * 2 1 3 34 34 H 1.08989 * 109.47464 * 119.99838 * 2 1 3 35 35 H 1.07997 * 119.94439 * 359.97438 * 4 3 2 36 36 H 1.08003 * 120.06189 * 180.02562 * 5 4 3 37 37 H 1.09001 * 109.47532 * 179.97438 * 13 11 10 38 38 H 1.09003 * 109.47147 * 300.00129 * 13 11 10 39 39 H 1.08996 * 109.46991 * 59.99552 * 13 11 10 40 40 H 1.00896 * 111.00144 * 328.95787 * 14 11 10 41 41 H 1.09006 * 109.47097 * 300.00040 * 15 14 11 42 42 H 1.09003 * 109.47089 * 59.99689 * 15 14 11 43 43 H 0.97007 * 120.00064 * 359.97438 * 18 16 15 44 44 H 0.97001 * 120.00640 * 180.02562 * 22 21 19 45 45 H 1.07994 * 120.05779 * 179.75010 * 28 6 5 46 46 H 1.08003 * 119.93888 * 180.23022 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2620 2.0705 1.1993 5 6 2.7225 3.3716 1.2051 6 6 2.9554 4.0308 -0.0001 7 6 3.4501 5.4302 0.0000 8 7 3.7093 6.1619 1.0522 9 8 4.0976 7.2593 0.7115 10 6 4.1256 7.3411 -0.6224 11 6 4.5477 8.5365 -1.4371 12 1 4.2197 8.4074 -2.4686 13 6 6.0716 8.6673 -1.3992 14 7 3.9380 9.7503 -0.8777 15 6 3.8108 10.7957 -1.9020 16 6 3.1834 12.0227 -1.2923 17 8 2.8724 12.0260 -0.1200 18 7 2.9670 13.1161 -2.0500 19 6 2.3958 14.2323 -1.4954 20 1 2.1196 14.2355 -0.4513 21 6 2.1732 15.3597 -2.2764 22 7 2.5097 15.3560 -3.5467 23 14 1.3955 16.8808 -1.5207 24 1 1.1125 16.6304 -0.0846 25 1 2.3286 18.0290 -1.6479 26 1 0.1278 17.1923 -2.2286 27 7 3.7173 6.1871 -1.0883 28 6 2.7170 3.3736 -1.2052 29 6 2.2611 2.0709 -1.1994 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5137 -0.8899 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5137 0.8899 35 1 2.0807 1.5588 2.1329 36 1 2.9019 3.8778 2.1421 37 1 6.3769 9.5317 -1.9888 38 1 6.3996 8.7965 -0.3677 39 1 6.5240 7.7667 -1.8142 40 1 3.0439 9.5452 -0.4575 41 1 4.7983 11.0471 -2.2891 42 1 3.1832 10.4324 -2.7159 43 1 3.2154 13.1134 -2.9877 44 1 2.3546 16.1432 -4.0919 45 1 2.8920 3.8813 -2.1421 46 1 2.0795 1.5592 -2.1330 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348537818.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:29 Heat of formation + Delta-G solvation = 50.196822 kcal Electronic energy + Delta-G solvation = -28000.023181 eV Core-core repulsion = 23892.550144 eV Total energy + Delta-G solvation = -4107.473036 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.66475 -39.81595 -38.50552 -36.84087 -36.14616 -34.45659 -33.94390 -32.52361 -31.40049 -31.24527 -30.32339 -29.63158 -26.79221 -25.34663 -24.91611 -23.89504 -23.29591 -22.73007 -21.58987 -20.49922 -19.40741 -18.19795 -18.12403 -17.85524 -16.55953 -16.48767 -15.79349 -15.72799 -15.47055 -15.43008 -14.51338 -14.34740 -14.19511 -14.08543 -13.89171 -13.75789 -13.68021 -13.50549 -13.04260 -12.84850 -12.73252 -12.48954 -12.23093 -12.06305 -11.99084 -11.75680 -11.71002 -11.53345 -11.42949 -11.38527 -11.29447 -11.10913 -11.04548 -10.41084 -10.35357 -10.24551 -9.54733 -9.34099 -8.82460 -8.61300 -8.28895 -7.99575 -6.44318 -3.85170 0.40741 1.02132 1.13162 2.21302 2.62474 3.15237 3.16121 3.26513 3.33867 3.44308 3.64878 3.85894 4.07118 4.25151 4.29763 4.40994 4.58643 4.62280 4.80317 4.87362 4.89339 4.97369 5.03990 5.08560 5.12084 5.18065 5.22837 5.30803 5.45173 5.50222 5.51406 5.54041 5.63649 5.65060 5.70810 5.75523 5.77299 5.84433 6.02809 6.08699 6.12655 6.19483 6.20317 6.52440 6.87987 7.31908 7.53540 7.99625 8.03169 8.57524 9.15243 9.50406 10.01310 10.73287 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.020405 B = 0.001656 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.911244 B =16899.668960 C =17350.519377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 C -0.066 4.066 4 C -0.121 4.121 5 C -0.080 4.080 6 C -0.024 4.024 7 C 0.206 3.794 8 N -0.376 5.376 9 O 0.102 5.898 10 C 0.193 3.807 11 C 0.178 3.822 12 H 0.092 0.908 13 C -0.142 4.142 14 N -0.658 5.658 15 C 0.049 3.951 16 C 0.440 3.560 17 O -0.581 6.581 18 N -0.561 5.561 19 C -0.300 4.300 20 H 0.104 0.896 21 C 0.023 3.977 22 N -0.901 5.901 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 N -0.475 5.475 28 C -0.072 4.072 29 C -0.122 4.122 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.356 0.644 41 H 0.094 0.906 42 H 0.051 0.949 43 H 0.393 0.607 44 H 0.271 0.729 45 H 0.136 0.864 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.322 -28.685 1.234 28.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.067 4.067 4 C -0.139 4.139 5 C -0.100 4.100 6 C -0.025 4.025 7 C -0.064 4.064 8 N -0.080 5.080 9 O 0.041 5.959 10 C -0.028 4.028 11 C 0.066 3.934 12 H 0.109 0.891 13 C -0.201 4.201 14 N -0.293 5.293 15 C -0.083 4.083 16 C 0.225 3.775 17 O -0.465 6.465 18 N -0.198 5.198 19 C -0.429 4.429 20 H 0.122 0.878 21 C -0.179 4.179 22 N -0.542 5.542 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 N -0.208 5.208 28 C -0.091 4.091 29 C -0.139 4.139 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.176 0.824 41 H 0.112 0.888 42 H 0.069 0.931 43 H 0.226 0.774 44 H 0.081 0.919 45 H 0.154 0.846 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.469 -28.841 2.655 29.068 hybrid contribution -0.896 0.743 -0.895 1.469 sum 1.573 -28.097 1.761 28.196 Atomic orbital electron populations 1.21756 0.94396 1.01911 1.02477 1.20600 0.96422 0.92299 1.03152 1.20104 0.97066 0.96362 0.93133 1.20942 1.00614 0.94351 0.97953 1.21181 0.96993 0.94600 0.97208 1.17335 1.03238 0.87261 0.94708 1.23902 1.01270 0.97297 0.83885 1.74911 1.17107 0.92918 1.23094 1.85364 1.59713 1.26390 1.24471 1.28814 0.95219 0.96551 0.82259 1.20198 0.97508 0.81725 0.93943 0.89096 1.21888 0.91268 1.02647 1.04281 1.60299 1.31839 1.05596 1.31532 1.21798 1.01723 0.92111 0.92686 1.19662 0.85404 0.84795 0.87606 1.90550 1.56226 1.83247 1.16434 1.41844 1.54254 1.11701 1.12007 1.19765 1.35967 0.89952 0.97231 0.87791 1.25261 0.97805 0.99447 0.95356 1.69611 1.47854 1.30862 1.05854 0.85798 0.78494 0.80717 0.79336 1.19191 1.20711 1.20775 1.71968 1.18102 1.01930 1.28845 1.21206 0.96234 0.94286 0.97413 1.20986 1.00614 0.94433 0.97915 0.92214 0.92420 0.92377 0.90741 0.90783 0.85332 0.85099 0.90118 0.90748 0.91886 0.82358 0.88791 0.93126 0.77405 0.91885 0.84630 0.85281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.89 37.16 0.37 -0.37 16 2 C -0.09 -0.46 6.06 -27.88 -0.17 -0.62 16 3 C -0.07 -0.50 5.14 -104.56 -0.54 -1.03 16 4 C -0.12 -0.99 9.68 -39.63 -0.38 -1.37 16 5 C -0.08 -0.82 9.69 -39.25 -0.38 -1.20 16 6 C -0.02 -0.28 5.88 -104.89 -0.62 -0.90 16 7 C 0.21 2.88 7.80 -156.11 -1.22 1.66 16 8 N -0.38 -5.61 11.86 30.97 0.37 -5.24 16 9 O 0.10 1.52 11.29 18.04 0.20 1.72 16 10 C 0.19 2.59 6.98 -12.99 -0.09 2.50 16 11 C 0.18 2.13 3.16 -68.87 -0.22 1.91 16 12 H 0.09 0.96 7.80 -51.93 -0.40 0.56 16 13 C -0.14 -1.45 9.40 37.16 0.35 -1.10 16 14 N -0.66 -10.04 5.93 -109.22 -0.65 -10.68 16 15 C 0.05 0.79 5.96 -4.98 -0.03 0.76 16 16 C 0.44 10.01 7.82 -10.99 -0.09 9.92 16 17 O -0.58 -15.46 15.78 5.55 0.09 -15.38 16 18 N -0.56 -13.80 5.29 -10.96 -0.06 -13.86 16 19 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 20 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.06 13.05 55.50 0.72 -23.34 16 23 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 N -0.47 -6.56 11.26 -9.88 -0.11 -6.67 16 28 C -0.07 -0.72 9.70 -39.26 -0.38 -1.10 16 29 C -0.12 -0.98 9.68 -39.63 -0.38 -1.36 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.31 8.14 -51.94 -0.42 -0.11 16 33 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 34 H 0.07 0.33 8.08 -51.94 -0.42 -0.09 16 35 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.13 1.33 7.87 -52.48 -0.41 0.91 16 37 H 0.08 0.77 7.45 -51.93 -0.39 0.38 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.36 5.89 8.05 -39.29 -0.32 5.57 16 41 H 0.09 1.33 7.44 -51.93 -0.39 0.94 16 42 H 0.05 0.72 8.06 -51.93 -0.42 0.30 16 43 H 0.39 9.14 7.90 -40.82 -0.32 8.82 16 44 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 45 H 0.14 1.32 7.88 -52.49 -0.41 0.91 16 46 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 LS Contribution 398.26 15.07 6.00 6.00 Total: -1.00 -32.06 398.26 -8.84 -40.90 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -6.37 Total: 10.90 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -4.02 Total: -0.17 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: 0.28 Total: -59.79 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.29 Total: -13.66 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.06 -8.84 -40.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348537818.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.098 kcal (2) G-P(sol) polarization free energy of solvation -32.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds