Wall clock time and date at job start Wed Apr 1 2020 03:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50708 * 109.46808 * 2 1 4 4 C 1.38315 * 119.87682 * 90.00266 * 3 2 1 5 5 C 1.38021 * 120.11758 * 179.97438 * 4 3 2 6 6 C 1.39331 * 119.87872 * 0.02562 * 5 4 3 7 7 C 1.48425 * 120.11868 * 179.97438 * 6 5 4 8 8 N 1.30759 * 126.41457 * 0.02562 * 7 6 5 9 9 O 1.21293 * 110.09597 * 179.97438 * 8 7 6 10 10 C 1.33668 * 110.02851 * 0.02562 * 9 8 7 11 11 C 1.50694 * 126.43726 * 179.97438 * 10 9 8 12 12 H 1.09003 * 109.47058 * 194.97578 * 11 10 9 13 13 C 1.52998 * 109.47434 * 74.97394 * 11 10 9 14 14 N 1.46903 * 109.47155 * 314.97351 * 11 10 9 15 15 C 1.46902 * 111.00129 * 205.00077 * 14 11 10 16 16 C 1.50698 * 109.47203 * 180.02562 * 15 14 11 17 17 O 1.21292 * 119.99964 * 359.97438 * 16 15 14 18 18 N 1.34774 * 119.99982 * 180.02562 * 16 15 14 19 19 C 1.37102 * 119.99914 * 179.97438 * 18 16 15 20 20 H 1.07996 * 119.99986 * 0.02562 * 19 18 16 21 21 C 1.38949 * 119.99539 * 179.97438 * 19 18 16 22 22 N 1.31405 * 120.00500 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99763 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46720 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47096 * 119.99684 * 23 21 19 26 26 H 1.48500 * 109.47118 * 240.00275 * 23 21 19 27 27 N 1.30975 * 107.12408 * 359.97438 * 10 9 8 28 28 C 1.39330 * 119.76071 * 0.24605 * 6 5 4 29 29 C 1.38017 * 119.87469 * 359.51953 * 28 6 5 30 30 H 1.09001 * 109.46929 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46892 * 299.99400 * 1 2 3 32 32 H 1.08989 * 109.47464 * 60.00162 * 1 2 3 33 33 H 1.08998 * 109.46892 * 240.00600 * 2 1 3 34 34 H 1.08989 * 109.47464 * 119.99838 * 2 1 3 35 35 H 1.07997 * 119.94439 * 359.97438 * 4 3 2 36 36 H 1.08003 * 120.06189 * 180.02562 * 5 4 3 37 37 H 1.09001 * 109.47532 * 179.97438 * 13 11 10 38 38 H 1.09003 * 109.47147 * 300.00129 * 13 11 10 39 39 H 1.08996 * 109.46991 * 59.99552 * 13 11 10 40 40 H 1.00896 * 111.00144 * 328.95787 * 14 11 10 41 41 H 1.09006 * 109.47097 * 300.00040 * 15 14 11 42 42 H 1.09003 * 109.47089 * 59.99689 * 15 14 11 43 43 H 0.97007 * 120.00064 * 359.97438 * 18 16 15 44 44 H 0.97001 * 120.00640 * 180.02562 * 22 21 19 45 45 H 1.07994 * 120.05779 * 179.75010 * 28 6 5 46 46 H 1.08003 * 119.93888 * 180.23022 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2620 2.0705 1.1993 5 6 2.7225 3.3716 1.2051 6 6 2.9554 4.0308 -0.0001 7 6 3.4501 5.4302 0.0000 8 7 3.7093 6.1619 1.0522 9 8 4.0976 7.2593 0.7115 10 6 4.1256 7.3411 -0.6224 11 6 4.5477 8.5365 -1.4371 12 1 4.2197 8.4074 -2.4686 13 6 6.0716 8.6673 -1.3992 14 7 3.9380 9.7503 -0.8777 15 6 3.8108 10.7957 -1.9020 16 6 3.1834 12.0227 -1.2923 17 8 2.8724 12.0260 -0.1200 18 7 2.9670 13.1161 -2.0500 19 6 2.3958 14.2323 -1.4954 20 1 2.1196 14.2355 -0.4513 21 6 2.1732 15.3597 -2.2764 22 7 2.5097 15.3560 -3.5467 23 14 1.3955 16.8808 -1.5207 24 1 1.1125 16.6304 -0.0846 25 1 2.3286 18.0290 -1.6479 26 1 0.1278 17.1923 -2.2286 27 7 3.7173 6.1871 -1.0883 28 6 2.7170 3.3736 -1.2052 29 6 2.2611 2.0709 -1.1994 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5137 -0.8899 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5137 0.8899 35 1 2.0807 1.5588 2.1329 36 1 2.9019 3.8778 2.1421 37 1 6.3769 9.5317 -1.9888 38 1 6.3996 8.7965 -0.3677 39 1 6.5240 7.7667 -1.8142 40 1 3.0439 9.5452 -0.4575 41 1 4.7983 11.0471 -2.2891 42 1 3.1832 10.4324 -2.7159 43 1 3.2154 13.1134 -2.9877 44 1 2.3546 16.1432 -4.0919 45 1 2.8920 3.8813 -2.1421 46 1 2.0795 1.5592 -2.1330 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348537818.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:28 Heat of formation + Delta-G solvation = 28.011724 kcal Electronic energy + Delta-G solvation = -28000.985199 eV Core-core repulsion = 23892.550144 eV Total energy + Delta-G solvation = -4108.435054 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -46.72810 -40.49917 -40.22183 -38.09017 -37.11382 -35.94195 -35.11906 -33.60833 -33.20807 -32.09718 -31.33450 -30.35129 -28.24396 -26.38237 -26.10961 -25.18277 -24.11705 -23.50678 -22.32526 -21.34415 -21.14065 -19.93376 -19.28192 -19.08295 -17.86114 -17.38875 -17.12446 -16.68130 -16.43999 -16.37497 -16.20942 -15.72444 -15.49037 -14.91773 -14.87406 -14.67296 -14.47556 -14.34964 -14.24233 -13.83047 -13.62639 -13.54677 -13.50688 -13.39261 -13.06225 -12.91273 -12.85228 -12.56319 -12.52625 -12.38926 -12.31859 -12.11758 -12.11152 -11.90322 -11.70612 -11.50402 -11.41018 -10.36323 -10.03358 -9.99968 -9.59345 -9.58013 -8.45732 -5.93884 -0.45706 0.14859 0.33357 1.26971 1.37430 1.43318 1.56792 1.61298 2.06379 2.14274 2.32198 2.65803 2.71421 2.99197 3.21998 3.41927 3.59809 3.78195 3.85454 3.94487 4.05838 4.07904 4.27123 4.29395 4.32988 4.38874 4.47355 4.52160 4.55283 4.59222 4.60440 4.64409 4.80027 4.88407 4.94466 4.97106 5.10563 5.10706 5.29501 5.31809 5.38240 5.40483 5.42991 5.58441 5.68747 5.87084 6.01419 6.06752 6.61408 6.94054 7.14417 7.57733 8.13429 8.71602 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.020405 B = 0.001656 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.911244 B =16899.668960 C =17350.519377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 C -0.059 4.059 4 C -0.121 4.121 5 C -0.091 4.091 6 C -0.055 4.055 7 C 0.206 3.794 8 N -0.398 5.398 9 O 0.082 5.918 10 C 0.195 3.805 11 C 0.183 3.817 12 H 0.114 0.886 13 C -0.139 4.139 14 N -0.672 5.672 15 C 0.064 3.936 16 C 0.437 3.563 17 O -0.625 6.625 18 N -0.570 5.570 19 C -0.334 4.334 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.918 5.918 23 Si 0.990 3.010 24 H -0.275 1.275 25 H -0.271 1.271 26 H -0.271 1.271 27 N -0.481 5.481 28 C -0.078 4.078 29 C -0.120 4.120 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.151 0.849 36 H 0.124 0.876 37 H 0.093 0.907 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.345 0.655 41 H 0.123 0.877 42 H 0.079 0.921 43 H 0.398 0.602 44 H 0.278 0.722 45 H 0.135 0.865 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.362 -30.550 -0.139 30.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C -0.060 4.060 4 C -0.139 4.139 5 C -0.111 4.111 6 C -0.057 4.057 7 C -0.063 4.063 8 N -0.106 5.106 9 O 0.025 5.975 10 C -0.026 4.026 11 C 0.072 3.928 12 H 0.132 0.868 13 C -0.197 4.197 14 N -0.306 5.306 15 C -0.067 4.067 16 C 0.225 3.775 17 O -0.511 6.511 18 N -0.208 5.208 19 C -0.463 4.463 20 H 0.095 0.905 21 C -0.210 4.210 22 N -0.558 5.558 23 Si 0.814 3.186 24 H -0.200 1.200 25 H -0.196 1.196 26 H -0.197 1.197 27 N -0.215 5.215 28 C -0.098 4.098 29 C -0.138 4.138 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.169 0.831 36 H 0.142 0.858 37 H 0.111 0.889 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.164 0.836 41 H 0.141 0.859 42 H 0.097 0.903 43 H 0.233 0.767 44 H 0.087 0.913 45 H 0.153 0.847 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.538 -30.698 1.247 30.828 hybrid contribution -0.930 1.169 -0.461 1.563 sum 1.609 -29.529 0.786 29.583 Atomic orbital electron populations 1.21758 0.94170 1.02660 1.01945 1.20669 0.96434 0.90641 1.04495 1.20466 0.95466 0.97483 0.92609 1.21225 0.99721 0.93503 0.99405 1.21252 0.97673 0.95594 0.96536 1.17553 1.05415 0.86707 0.96037 1.24394 1.00224 0.98096 0.83627 1.74899 1.18629 0.93231 1.23808 1.85330 1.60358 1.26632 1.25208 1.29160 0.94559 0.96942 0.81946 1.20372 0.98308 0.79726 0.94345 0.86813 1.21907 0.89754 1.04108 1.03980 1.60284 1.31424 1.06973 1.31933 1.21682 1.03005 0.89268 0.92794 1.20803 0.83793 0.85917 0.86995 1.90522 1.57683 1.84290 1.18630 1.41888 1.54729 1.11799 1.12375 1.19684 1.38121 0.91943 0.96587 0.90469 1.25975 0.97751 1.01538 0.95763 1.69659 1.47933 1.31797 1.06452 0.84910 0.78103 0.77491 0.78067 1.20022 1.19580 1.19678 1.71969 1.18528 1.02112 1.28884 1.21299 0.96578 0.95184 0.96711 1.21294 0.99551 0.93620 0.99318 0.90864 0.93050 0.92859 0.89355 0.89577 0.83127 0.85808 0.88850 0.91938 0.90093 0.83554 0.85913 0.90334 0.76732 0.91298 0.84738 0.82779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.89 71.98 0.71 -0.40 16 2 C -0.09 -0.63 6.06 29.85 0.18 -0.45 16 3 C -0.06 -0.77 5.14 -19.82 -0.10 -0.87 16 4 C -0.12 -1.82 9.68 22.24 0.22 -1.60 16 5 C -0.09 -1.88 9.69 22.48 0.22 -1.66 16 6 C -0.06 -1.32 5.88 -20.04 -0.12 -1.44 16 7 C 0.21 5.92 7.80 137.30 1.07 6.99 16 8 N -0.40 -12.39 11.86 -59.13 -0.70 -13.09 16 9 O 0.08 2.54 11.29 74.61 0.84 3.38 16 10 C 0.20 5.23 6.98 88.35 0.62 5.85 16 11 C 0.18 4.13 3.16 44.17 0.14 4.27 16 12 H 0.11 2.10 7.80 -2.39 -0.02 2.08 16 13 C -0.14 -2.58 9.40 71.98 0.68 -1.90 16 14 N -0.67 -20.06 5.93 -499.45 -2.96 -23.02 16 15 C 0.06 1.97 5.96 85.56 0.51 2.48 16 16 C 0.44 20.03 7.82 87.66 0.69 20.71 16 17 O -0.62 -34.26 15.78 -3.07 -0.05 -34.31 16 18 N -0.57 -28.34 5.29 -306.99 -1.62 -29.96 16 19 C -0.33 -18.73 9.68 84.04 0.81 -17.91 16 20 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 21 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 22 N -0.92 -48.53 13.05 21.66 0.28 -48.25 16 23 Si 0.99 42.68 29.55 68.60 2.03 44.71 16 24 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 N -0.48 -13.28 11.26 -302.51 -3.41 -16.69 16 28 C -0.08 -1.52 9.70 22.48 0.22 -1.30 16 29 C -0.12 -1.71 9.68 22.24 0.22 -1.49 16 30 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.09 0.46 8.08 -2.39 -0.02 0.44 16 34 H 0.09 0.48 8.08 -2.39 -0.02 0.46 16 35 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 36 H 0.12 2.64 7.87 -2.91 -0.02 2.62 16 37 H 0.09 1.51 7.45 -2.39 -0.02 1.50 16 38 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.35 11.59 8.05 -89.70 -0.72 10.87 16 41 H 0.12 3.12 7.44 -2.38 -0.02 3.10 16 42 H 0.08 2.03 8.06 -2.39 -0.02 2.01 16 43 H 0.40 18.50 7.90 -92.70 -0.73 17.77 16 44 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 45 H 0.13 2.56 7.88 -2.91 -0.02 2.54 16 46 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -71.37 398.26 0.51 -70.86 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: -0.43 Total: 35.18 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 6.52 Total: 11.19 kcal Atomic # 7 Polarization: -122.60 SS G_CDS: -8.41 Total: -131.01 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: 0.79 Total: -30.93 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -71.37 0.51 -70.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348537818.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.872 kcal (2) G-P(sol) polarization free energy of solvation -71.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds