Wall clock time and date at job start Wed Apr 1 2020 04:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46927 * 2 1 4 4 C 1.52997 * 109.47375 * 240.00046 * 2 1 3 5 5 C 1.50706 * 109.47385 * 60.00002 * 4 2 1 6 6 H 1.08004 * 119.99542 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00256 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00171 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 120.00032 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.47058 * 90.00100 * 9 7 5 11 11 H 1.48496 * 109.46874 * 210.00555 * 9 7 5 12 12 H 1.48500 * 109.47020 * 330.00341 * 9 7 5 13 13 C 1.52998 * 109.47364 * 119.99663 * 2 1 3 14 14 N 1.46499 * 109.46966 * 300.00355 * 13 2 1 15 15 C 1.34784 * 119.99872 * 179.97438 * 14 13 2 16 16 O 1.21362 * 119.99996 * 359.97438 * 15 14 13 17 17 C 1.49327 * 119.99778 * 180.02562 * 15 14 13 18 18 O 1.21385 * 120.00146 * 359.97438 * 17 15 14 19 19 N 1.34779 * 119.99415 * 180.02562 * 17 15 14 20 20 C 1.40009 * 119.99628 * 185.26952 * 19 17 15 21 21 C 1.40983 * 119.93194 * 33.12574 * 20 19 17 22 22 C 1.35907 * 119.65388 * 179.97438 * 21 20 19 23 23 C 1.40961 * 119.45258 * 0.02562 * 22 21 20 24 24 N 1.32636 * 132.21290 * 180.02562 * 23 22 21 25 25 C 1.33487 * 109.15324 * 179.97438 * 24 23 22 26 26 C 1.35133 * 108.61552 * 0.05691 * 25 24 23 27 27 N 1.36832 * 107.17793 * 359.92822 * 26 25 24 28 28 C 1.35619 * 119.93482 * 213.14220 * 20 19 17 29 29 H 1.08997 * 109.47334 * 299.99691 * 1 2 3 30 30 H 1.09005 * 109.46993 * 60.00555 * 1 2 3 31 31 H 1.09000 * 109.46663 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47532 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47044 * 300.00015 * 3 2 1 34 34 H 1.08997 * 109.47147 * 59.99552 * 3 2 1 35 35 H 1.09002 * 109.47023 * 179.97438 * 4 2 1 36 36 H 1.09000 * 109.47059 * 299.99555 * 4 2 1 37 37 H 0.97003 * 120.00232 * 179.97438 * 8 7 5 38 38 H 1.09002 * 109.47483 * 180.02562 * 13 2 1 39 39 H 1.09000 * 109.47083 * 60.00438 * 13 2 1 40 40 H 0.96997 * 120.00137 * 0.02562 * 14 13 2 41 41 H 0.96997 * 120.00633 * 5.26982 * 19 17 15 42 42 H 1.08002 * 120.17148 * 359.97421 * 21 20 19 43 43 H 1.08004 * 120.27346 * 179.72250 * 22 21 20 44 44 H 1.08003 * 125.69167 * 179.97438 * 25 24 23 45 45 H 1.07990 * 126.41286 * 179.97438 * 26 25 24 46 46 H 1.08000 * 119.73894 * 0.02898 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5378 -0.0108 -2.4798 6 1 0.9165 0.8670 -2.3806 7 6 1.8705 -0.4821 -3.7319 8 7 1.4317 0.1375 -4.8058 9 14 2.9445 -2.0010 -3.9033 10 1 2.0860 -3.2118 -3.9482 11 1 3.7360 -1.9086 -5.1563 12 1 3.8652 -2.0898 -2.7416 13 6 2.0401 -0.7212 1.2492 14 7 1.5517 -0.0305 2.4454 15 6 1.8769 -0.4912 3.6696 16 8 2.5739 -1.4785 3.7809 17 6 1.3786 0.2124 4.8887 18 8 0.6810 1.1996 4.7773 19 7 1.7043 -0.2480 6.1128 20 6 1.1489 0.3435 7.2538 21 6 -0.1605 0.8644 7.2096 22 6 -0.6942 1.4370 8.3207 23 6 0.0711 1.5020 9.5026 24 7 -0.1895 1.9925 10.7071 25 6 0.8733 1.8095 11.4938 26 6 1.8377 1.1893 10.7787 27 7 1.3415 0.9893 9.5193 28 6 1.8716 0.4147 8.3992 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3632 -1.0277 0.0005 32 1 3.1300 1.4427 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 3.1301 -0.7208 -1.2494 36 1 1.6768 -1.7489 -1.2492 37 1 1.6661 -0.1939 -5.6868 38 1 3.1301 -0.7208 1.2495 39 1 1.6768 -1.7488 1.2493 40 1 0.9936 0.7579 2.3563 41 1 2.3234 -0.9892 6.2034 42 1 -0.7363 0.8087 6.2977 43 1 -1.6946 1.8432 8.2967 44 1 0.9502 2.1086 12.5288 45 1 2.8165 0.9041 11.1347 46 1 2.8743 0.0143 8.4257 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588740015.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:15 Heat of formation + Delta-G solvation = 23.589378 kcal Electronic energy + Delta-G solvation = -28787.538989 eV Core-core repulsion = 24678.912167 eV Total energy + Delta-G solvation = -4108.626822 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.20105 -41.26582 -39.41504 -37.75270 -37.43471 -35.08895 -34.01355 -33.80261 -32.18048 -29.92942 -29.16381 -28.04843 -27.08295 -26.64428 -24.99564 -24.15963 -23.01029 -22.21989 -21.90015 -20.67563 -19.61714 -18.45881 -18.12712 -17.51769 -16.90905 -16.83762 -16.67551 -16.28470 -16.04144 -15.50991 -15.11437 -14.86137 -14.66180 -14.37412 -14.17009 -13.98976 -13.76197 -13.59110 -13.45514 -12.84020 -12.79439 -12.47391 -12.35211 -12.28155 -11.91979 -11.51864 -11.34633 -11.21673 -11.06662 -10.69879 -10.65293 -10.61375 -10.50695 -10.08157 -10.07298 -9.81525 -9.58121 -9.21199 -9.07579 -8.85679 -8.59068 -8.23794 -6.09229 -4.07249 0.19031 0.69594 1.18448 1.67184 2.35020 2.44365 2.87738 3.13986 3.26570 3.27789 3.35234 3.37412 3.82040 4.01662 4.13397 4.20279 4.40116 4.48367 4.67937 4.90568 5.00304 5.17081 5.21786 5.36902 5.38616 5.41562 5.51064 5.51590 5.68694 5.90704 5.96995 6.00118 6.01838 6.14731 6.20901 6.21473 6.41804 6.51094 6.51444 6.59672 6.78037 6.94171 6.96727 7.04798 7.10373 7.26590 7.33679 7.47024 7.71428 7.75607 8.46860 8.94578 9.52761 11.03358 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.035379 B = 0.001775 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.241838 B =15766.634457 C =16230.416486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.064 4.064 3 C -0.132 4.132 4 C -0.001 4.001 5 C -0.513 4.513 6 H 0.079 0.921 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.121 3.879 14 N -0.681 5.681 15 C 0.504 3.496 16 O -0.522 6.522 17 C 0.514 3.486 18 O -0.491 6.491 19 N -0.643 5.643 20 C 0.141 3.859 21 C -0.098 4.098 22 C -0.059 4.059 23 C 0.213 3.787 24 N -0.490 5.490 25 C 0.031 3.969 26 C -0.097 4.097 27 N -0.348 5.348 28 C 0.018 3.982 29 H 0.033 0.967 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.033 0.967 35 H 0.019 0.981 36 H 0.015 0.985 37 H 0.263 0.737 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.414 0.586 41 H 0.426 0.574 42 H 0.157 0.843 43 H 0.159 0.841 44 H 0.182 0.818 45 H 0.183 0.817 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.915 -0.047 29.105 29.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.064 4.064 3 C -0.189 4.189 4 C -0.039 4.039 5 C -0.551 4.551 6 H 0.097 0.903 7 C -0.134 4.134 8 N -0.541 5.541 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C -0.001 4.001 14 N -0.334 5.334 15 C 0.283 3.717 16 O -0.399 6.399 17 C 0.296 3.704 18 O -0.363 6.363 19 N -0.292 5.292 20 C 0.043 3.957 21 C -0.122 4.122 22 C -0.080 4.080 23 C -0.030 4.030 24 N -0.210 5.210 25 C -0.122 4.122 26 C -0.229 4.229 27 N -0.020 5.020 28 C -0.108 4.108 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.037 0.963 36 H 0.033 0.967 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.252 0.748 41 H 0.265 0.735 42 H 0.174 0.826 43 H 0.177 0.823 44 H 0.199 0.801 45 H 0.200 0.800 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.239 0.299 29.059 29.061 hybrid contribution 1.585 -1.276 -0.426 2.078 sum 1.824 -0.977 28.633 28.708 Atomic orbital electron populations 1.21813 0.94522 1.01427 1.01168 1.20736 0.96092 0.96066 0.93545 1.21810 1.00524 0.95421 1.01166 1.19591 0.96327 0.95496 0.92454 1.21059 1.32023 1.13467 0.88560 0.90326 1.25000 0.95680 0.96746 0.95981 1.69898 1.45749 1.40511 0.97910 0.86856 0.81291 0.83897 0.77687 1.20373 1.21476 1.19029 1.21915 0.99433 0.96335 0.82383 1.46039 1.50918 1.31610 1.04806 1.19617 0.82423 0.85133 0.84503 1.90791 1.37206 1.25422 1.86516 1.20570 0.81046 0.84303 0.84500 1.90813 1.35310 1.23777 1.86430 1.42987 1.47026 1.36053 1.03097 1.16835 0.92771 0.99814 0.86237 1.21134 0.93257 0.98182 0.99669 1.20195 1.00376 0.99555 0.87872 1.21055 0.84443 1.01547 0.95995 1.70795 1.27487 1.23091 0.99634 1.22539 0.89199 1.00200 1.00238 1.22697 1.03294 1.13702 0.83195 1.42494 1.13712 1.36897 1.08902 1.20908 0.99627 1.04579 0.85693 0.94816 0.90573 0.93251 0.93262 0.90577 0.94814 0.96271 0.96707 0.92734 0.90883 0.90862 0.74829 0.73471 0.82595 0.82341 0.80103 0.79967 0.81483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 8.05 37.16 0.30 -1.85 16 2 C -0.06 -1.09 0.54 -154.51 -0.08 -1.17 16 3 C -0.13 -2.16 8.05 37.16 0.30 -1.87 16 4 C 0.00 -0.02 3.11 -27.88 -0.09 -0.11 16 5 C -0.51 -13.26 8.20 -34.44 -0.28 -13.54 16 6 H 0.08 2.16 5.92 -52.48 -0.31 1.85 16 7 C 0.07 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.90 -26.59 13.96 55.43 0.77 -25.81 16 9 Si 0.88 20.80 27.47 -169.99 -4.67 16.13 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 13 C 0.12 1.79 4.56 -4.04 -0.02 1.77 16 14 N -0.68 -8.59 4.95 -60.77 -0.30 -8.89 16 15 C 0.50 6.12 7.89 -11.64 -0.09 6.03 16 16 O -0.52 -7.30 16.48 5.49 0.09 -7.21 16 17 C 0.51 5.37 7.63 -11.64 -0.09 5.28 16 18 O -0.49 -5.93 14.15 5.47 0.08 -5.85 16 19 N -0.64 -5.11 5.32 -10.49 -0.06 -5.16 16 20 C 0.14 1.16 6.23 -84.02 -0.52 0.63 16 21 C -0.10 -0.87 8.65 -39.38 -0.34 -1.21 16 22 C -0.06 -0.53 10.10 -39.39 -0.40 -0.93 16 23 C 0.21 2.25 7.80 -156.04 -1.22 1.03 16 24 N -0.49 -5.57 11.32 -12.77 -0.14 -5.71 16 25 C 0.03 0.25 11.83 -17.94 -0.21 0.04 16 26 C -0.10 -0.70 11.76 -16.42 -0.19 -0.89 16 27 N -0.35 -3.06 2.95 -62.45 -0.18 -3.24 16 28 C 0.02 0.13 10.84 -16.37 -0.18 -0.05 16 29 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 30 H 0.08 1.42 6.62 -51.93 -0.34 1.08 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.42 6.62 -51.93 -0.34 1.08 16 34 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 35 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 36 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.41 4.92 5.63 -40.82 -0.23 4.69 16 41 H 0.43 2.58 8.29 -40.82 -0.34 2.24 16 42 H 0.16 1.40 6.45 -52.49 -0.34 1.06 16 43 H 0.16 1.12 8.06 -52.48 -0.42 0.70 16 44 H 0.18 0.91 8.06 -52.48 -0.42 0.49 16 45 H 0.18 0.65 8.06 -52.49 -0.42 0.23 16 46 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 379.18 15.07 5.71 5.71 Total: -1.00 -32.70 379.18 -7.85 -40.54 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.93 Total: 4.57 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -3.21 Total: -5.08 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: 0.09 Total: -48.82 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.17 Total: -13.06 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.70 -7.85 -40.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588740015.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.133 kcal (2) G-P(sol) polarization free energy of solvation -32.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds