Wall clock time and date at job start Wed Apr 1 2020 04:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46927 * 2 1 4 4 C 1.52997 * 109.47375 * 240.00046 * 2 1 3 5 5 C 1.50706 * 109.47385 * 60.00002 * 4 2 1 6 6 H 1.08004 * 119.99542 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00256 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00171 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 120.00032 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.47058 * 90.00100 * 9 7 5 11 11 H 1.48496 * 109.46874 * 210.00555 * 9 7 5 12 12 H 1.48500 * 109.47020 * 330.00341 * 9 7 5 13 13 C 1.52998 * 109.47364 * 119.99663 * 2 1 3 14 14 N 1.46499 * 109.46966 * 300.00355 * 13 2 1 15 15 C 1.34784 * 119.99872 * 179.97438 * 14 13 2 16 16 O 1.21362 * 119.99996 * 359.97438 * 15 14 13 17 17 C 1.49327 * 119.99778 * 180.02562 * 15 14 13 18 18 O 1.21385 * 120.00146 * 359.97438 * 17 15 14 19 19 N 1.34779 * 119.99415 * 180.02562 * 17 15 14 20 20 C 1.40009 * 119.99628 * 185.26952 * 19 17 15 21 21 C 1.40983 * 119.93194 * 33.12574 * 20 19 17 22 22 C 1.35907 * 119.65388 * 179.97438 * 21 20 19 23 23 C 1.40961 * 119.45258 * 0.02562 * 22 21 20 24 24 N 1.32636 * 132.21290 * 180.02562 * 23 22 21 25 25 C 1.33487 * 109.15324 * 179.97438 * 24 23 22 26 26 C 1.35133 * 108.61552 * 0.05691 * 25 24 23 27 27 N 1.36832 * 107.17793 * 359.92822 * 26 25 24 28 28 C 1.35619 * 119.93482 * 213.14220 * 20 19 17 29 29 H 1.08997 * 109.47334 * 299.99691 * 1 2 3 30 30 H 1.09005 * 109.46993 * 60.00555 * 1 2 3 31 31 H 1.09000 * 109.46663 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47532 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47044 * 300.00015 * 3 2 1 34 34 H 1.08997 * 109.47147 * 59.99552 * 3 2 1 35 35 H 1.09002 * 109.47023 * 179.97438 * 4 2 1 36 36 H 1.09000 * 109.47059 * 299.99555 * 4 2 1 37 37 H 0.97003 * 120.00232 * 179.97438 * 8 7 5 38 38 H 1.09002 * 109.47483 * 180.02562 * 13 2 1 39 39 H 1.09000 * 109.47083 * 60.00438 * 13 2 1 40 40 H 0.96997 * 120.00137 * 0.02562 * 14 13 2 41 41 H 0.96997 * 120.00633 * 5.26982 * 19 17 15 42 42 H 1.08002 * 120.17148 * 359.97421 * 21 20 19 43 43 H 1.08004 * 120.27346 * 179.72250 * 22 21 20 44 44 H 1.08003 * 125.69167 * 179.97438 * 25 24 23 45 45 H 1.07990 * 126.41286 * 179.97438 * 26 25 24 46 46 H 1.08000 * 119.73894 * 0.02898 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5378 -0.0108 -2.4798 6 1 0.9165 0.8670 -2.3806 7 6 1.8705 -0.4821 -3.7319 8 7 1.4317 0.1375 -4.8058 9 14 2.9445 -2.0010 -3.9033 10 1 2.0860 -3.2118 -3.9482 11 1 3.7360 -1.9086 -5.1563 12 1 3.8652 -2.0898 -2.7416 13 6 2.0401 -0.7212 1.2492 14 7 1.5517 -0.0305 2.4454 15 6 1.8769 -0.4912 3.6696 16 8 2.5739 -1.4785 3.7809 17 6 1.3786 0.2124 4.8887 18 8 0.6810 1.1996 4.7773 19 7 1.7043 -0.2480 6.1128 20 6 1.1489 0.3435 7.2538 21 6 -0.1605 0.8644 7.2096 22 6 -0.6942 1.4370 8.3207 23 6 0.0711 1.5020 9.5026 24 7 -0.1895 1.9925 10.7071 25 6 0.8733 1.8095 11.4938 26 6 1.8377 1.1893 10.7787 27 7 1.3415 0.9893 9.5193 28 6 1.8716 0.4147 8.3992 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3632 -1.0277 0.0005 32 1 3.1300 1.4427 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 3.1301 -0.7208 -1.2494 36 1 1.6768 -1.7489 -1.2492 37 1 1.6661 -0.1939 -5.6868 38 1 3.1301 -0.7208 1.2495 39 1 1.6768 -1.7488 1.2493 40 1 0.9936 0.7579 2.3563 41 1 2.3234 -0.9892 6.2034 42 1 -0.7363 0.8087 6.2977 43 1 -1.6946 1.8432 8.2967 44 1 0.9502 2.1086 12.5288 45 1 2.8165 0.9041 11.1347 46 1 2.8743 0.0143 8.4257 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588740015.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:14 Heat of formation + Delta-G solvation = 2.120168 kcal Electronic energy + Delta-G solvation = -28788.469964 eV Core-core repulsion = 24678.912167 eV Total energy + Delta-G solvation = -4109.557797 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.81573 -42.10766 -40.36623 -38.75186 -38.44925 -35.88984 -35.10969 -34.64377 -33.98731 -30.60176 -29.81188 -29.75930 -28.22581 -28.00054 -25.99729 -24.81099 -24.32158 -23.21046 -22.61943 -21.54536 -20.57662 -19.42758 -19.04060 -18.87358 -18.28017 -17.70943 -17.43828 -16.99126 -16.86080 -16.56191 -16.08630 -15.85190 -15.61303 -15.50801 -15.26729 -15.01681 -14.94192 -14.69804 -14.21409 -14.18562 -14.13582 -13.85796 -13.43528 -13.00566 -12.93056 -12.83687 -12.70582 -12.63348 -12.29221 -12.18343 -12.17021 -11.76273 -11.52454 -11.35877 -11.26614 -11.16225 -10.93485 -10.80563 -10.68741 -10.27811 -9.48446 -8.83895 -8.20232 -6.21036 -0.43257 -0.00709 0.40940 0.92561 1.38757 1.41274 1.50890 1.68188 1.82484 2.04574 2.41096 2.46856 2.47877 3.15418 3.20632 3.27893 3.48110 3.64240 3.85707 3.93749 4.03868 4.05842 4.14263 4.45252 4.48701 4.60363 4.69069 4.72186 4.77163 4.81272 4.91043 4.93496 4.96974 5.04331 5.09752 5.17048 5.31674 5.38476 5.40086 5.42871 5.56114 5.64727 5.68033 5.71032 5.78649 6.00771 6.20270 6.39696 6.52857 6.80001 6.85089 6.86692 7.41752 8.95421 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.035379 B = 0.001775 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.241838 B =15766.634457 C =16230.416486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.060 4.060 3 C -0.128 4.128 4 C -0.002 4.002 5 C -0.504 4.504 6 H 0.049 0.951 7 C 0.003 3.997 8 N -0.953 5.953 9 Si 0.937 3.063 10 H -0.272 1.272 11 H -0.292 1.292 12 H -0.245 1.245 13 C 0.134 3.866 14 N -0.680 5.680 15 C 0.511 3.489 16 O -0.538 6.538 17 C 0.521 3.479 18 O -0.510 6.510 19 N -0.625 5.625 20 C 0.123 3.877 21 C -0.101 4.101 22 C -0.071 4.071 23 C 0.186 3.814 24 N -0.528 5.528 25 C 0.011 3.989 26 C -0.086 4.086 27 N -0.356 5.356 28 C 0.034 3.966 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.044 0.956 34 H 0.063 0.937 35 H 0.021 0.979 36 H 0.019 0.981 37 H 0.262 0.738 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.418 0.582 41 H 0.437 0.563 42 H 0.152 0.848 43 H 0.166 0.834 44 H 0.206 0.794 45 H 0.222 0.778 46 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.783 -1.379 32.010 32.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.061 4.061 3 C -0.185 4.185 4 C -0.040 4.040 5 C -0.542 4.542 6 H 0.067 0.933 7 C -0.193 4.193 8 N -0.595 5.595 9 Si 0.762 3.238 10 H -0.197 1.197 11 H -0.219 1.219 12 H -0.169 1.169 13 C 0.011 3.989 14 N -0.333 5.333 15 C 0.290 3.710 16 O -0.416 6.416 17 C 0.303 3.697 18 O -0.384 6.384 19 N -0.274 5.274 20 C 0.026 3.974 21 C -0.126 4.126 22 C -0.091 4.091 23 C -0.057 4.057 24 N -0.249 5.249 25 C -0.140 4.140 26 C -0.217 4.217 27 N -0.028 5.028 28 C -0.091 4.091 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.039 0.961 36 H 0.037 0.963 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.257 0.743 41 H 0.278 0.722 42 H 0.170 0.830 43 H 0.183 0.817 44 H 0.223 0.777 45 H 0.239 0.761 46 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 2.117 -1.043 32.023 32.110 hybrid contribution 0.977 -0.789 -1.193 1.733 sum 3.094 -1.833 30.830 31.039 Atomic orbital electron populations 1.21742 0.94122 1.01537 1.01100 1.20590 0.96390 0.96087 0.92999 1.21739 1.00581 0.95083 1.01077 1.19559 0.96258 0.95596 0.92583 1.21394 1.30255 1.12283 0.90276 0.93327 1.25885 0.97534 1.00080 0.95847 1.70057 1.48179 1.42785 0.98463 0.85852 0.79803 0.80109 0.78028 1.19739 1.21863 1.16887 1.21582 0.99366 0.96036 0.81908 1.45880 1.51136 1.31708 1.04531 1.19782 0.81758 0.84730 0.84681 1.90788 1.37882 1.26144 1.86791 1.20157 0.80975 0.83978 0.84630 1.90821 1.36346 1.24596 1.86612 1.42769 1.46517 1.35885 1.02232 1.16855 0.92841 1.00998 0.86695 1.21145 0.93831 0.98252 0.99355 1.20303 1.00903 1.00140 0.87800 1.21271 0.85645 1.02568 0.96212 1.70742 1.29286 1.24305 1.00589 1.23123 0.88890 1.00545 1.01408 1.23374 1.04265 1.11857 0.82158 1.42723 1.13351 1.36869 1.09813 1.21385 1.00576 1.02589 0.84565 0.91809 0.93711 0.93037 0.93084 0.93702 0.91858 0.96117 0.96269 0.92952 0.90763 0.90702 0.74314 0.72208 0.83043 0.81664 0.77680 0.76119 0.77829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.06 8.05 71.98 0.58 -3.48 16 2 C -0.06 -1.97 0.54 -52.18 -0.03 -2.00 16 3 C -0.13 -4.07 8.05 71.98 0.58 -3.49 16 4 C 0.00 -0.09 3.11 29.85 0.09 0.01 16 5 C -0.50 -26.55 8.20 25.60 0.21 -26.34 16 6 H 0.05 2.80 5.92 -2.91 -0.02 2.78 16 7 C 0.00 0.14 5.47 84.65 0.46 0.61 16 8 N -0.95 -58.06 13.96 21.44 0.30 -57.76 16 9 Si 0.94 42.81 27.47 68.60 1.88 44.69 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 12 H -0.25 -10.30 6.54 99.48 0.65 -9.65 16 13 C 0.13 3.62 4.56 86.38 0.39 4.01 16 14 N -0.68 -15.43 4.95 -464.53 -2.30 -17.73 16 15 C 0.51 11.11 7.89 87.23 0.69 11.80 16 16 O -0.54 -13.59 16.48 -3.29 -0.05 -13.64 16 17 C 0.52 9.73 7.63 87.23 0.67 10.39 16 18 O -0.51 -11.43 14.15 -3.36 -0.05 -11.48 16 19 N -0.62 -8.30 5.32 -305.46 -1.63 -9.92 16 20 C 0.12 1.75 6.23 37.90 0.24 1.99 16 21 C -0.10 -1.71 8.65 22.40 0.19 -1.51 16 22 C -0.07 -1.26 10.10 22.40 0.23 -1.04 16 23 C 0.19 3.80 7.80 134.11 1.05 4.84 16 24 N -0.53 -11.76 11.32 -194.33 -2.20 -13.96 16 25 C 0.01 0.17 11.83 83.73 0.99 1.16 16 26 C -0.09 -0.97 11.76 83.20 0.98 0.00 16 27 N -0.36 -5.41 2.95 -351.48 -1.04 -6.44 16 28 C 0.03 0.38 10.84 83.34 0.90 1.28 16 29 H 0.06 1.62 6.86 -2.39 -0.02 1.60 16 30 H 0.04 1.70 6.62 -2.38 -0.02 1.68 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.04 1.71 6.62 -2.39 -0.02 1.69 16 34 H 0.06 1.62 6.86 -2.39 -0.02 1.61 16 35 H 0.02 0.86 7.20 -2.39 -0.02 0.85 16 36 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 37 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 38 H 0.07 2.02 8.14 -2.39 -0.02 2.01 16 39 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.42 8.87 5.63 -92.71 -0.52 8.34 16 41 H 0.44 3.91 8.29 -92.71 -0.77 3.15 16 42 H 0.15 2.64 6.45 -2.91 -0.02 2.62 16 43 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 44 H 0.21 1.66 8.06 -2.91 -0.02 1.64 16 45 H 0.22 0.55 8.06 -2.92 -0.02 0.52 16 46 H 0.20 0.63 8.06 -2.91 -0.02 0.61 16 Total: -1.00 -72.85 379.18 2.84 -70.01 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -0.30 Total: 18.02 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: 8.22 Total: -1.78 kcal Atomic # 7 Polarization: -98.96 SS G_CDS: -6.86 Total: -105.82 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.10 Total: -25.11 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.88 Total: 44.69 kcal Total: -72.85 2.84 -70.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588740015.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.128 kcal (2) G-P(sol) polarization free energy of solvation -72.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds