Wall clock time and date at job start Wed Apr 1 2020 03:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47281 * 2 1 4 4 C 1.38286 * 119.97067 * 270.01874 * 3 2 1 5 5 C 1.38242 * 120.11649 * 180.02562 * 4 3 2 6 6 C 1.38176 * 120.05006 * 359.67534 * 5 4 3 7 7 C 1.38709 * 119.94321 * 0.58067 * 6 5 4 8 8 O 1.35898 * 120.05172 * 179.72386 * 7 6 5 9 9 C 1.42890 * 117.00437 * 359.71803 * 8 7 6 10 10 C 1.53004 * 109.47485 * 180.02562 * 9 8 7 11 11 N 1.46500 * 109.47101 * 180.02562 * 10 9 8 12 12 C 1.35315 * 125.86496 * 125.33179 * 11 10 9 13 13 C 1.35352 * 106.16945 * 180.11631 * 12 11 10 14 14 C 1.50703 * 126.74977 * 179.84958 * 13 12 11 15 15 N 1.46506 * 109.46952 * 94.70524 * 14 13 12 16 16 C 1.34774 * 119.99894 * 179.97438 * 15 14 13 17 17 O 1.21693 * 120.00012 * 359.73007 * 16 15 14 18 18 C 1.46372 * 120.00283 * 180.02562 * 16 15 14 19 19 H 1.08003 * 119.99711 * 354.02911 * 18 16 15 20 20 C 1.40042 * 120.00353 * 174.02723 * 18 16 15 21 21 N 1.30671 * 120.00122 * 6.20001 * 20 18 16 22 22 Si 1.86800 * 120.00350 * 186.19801 * 20 18 16 23 23 H 1.48497 * 109.47350 * 94.98100 * 22 20 18 24 24 H 1.48497 * 109.47171 * 214.98694 * 22 20 18 25 25 H 1.48507 * 109.46667 * 334.98404 * 22 20 18 26 26 N 1.33771 * 106.50216 * 359.58616 * 13 12 11 27 27 N 1.28637 * 108.87976 * 0.26272 * 26 13 12 28 28 C 1.38123 * 119.97285 * 89.99637 * 3 2 1 29 29 H 1.09002 * 109.46707 * 60.00504 * 1 2 3 30 30 H 1.08997 * 109.47305 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47203 * 300.00492 * 1 2 3 32 32 H 1.09001 * 109.47203 * 239.99507 * 2 1 3 33 33 H 1.09002 * 109.46707 * 119.99496 * 2 1 3 34 34 H 1.08012 * 119.94467 * 359.97438 * 4 3 2 35 35 H 1.08001 * 119.97510 * 179.97438 * 5 4 3 36 36 H 1.07999 * 120.02186 * 180.29557 * 6 5 4 37 37 H 1.09001 * 109.47128 * 60.00678 * 9 8 7 38 38 H 1.08998 * 109.47450 * 300.00484 * 9 8 7 39 39 H 1.09001 * 109.46691 * 60.00034 * 10 9 8 40 40 H 1.08998 * 109.46864 * 300.00466 * 10 9 8 41 41 H 1.07991 * 126.91380 * 359.96071 * 12 11 10 42 42 H 1.09005 * 109.47176 * 334.71457 * 14 13 12 43 43 H 1.08991 * 109.47367 * 214.70765 * 14 13 12 44 44 H 0.96998 * 120.00079 * 0.02562 * 15 14 13 45 45 H 0.97004 * 120.00166 * 180.02562 * 21 20 18 46 46 H 1.07995 * 120.02986 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2623 2.0722 -1.1979 5 6 2.7236 3.3754 -1.2015 6 6 2.9498 4.0326 -0.0072 7 6 2.7250 3.3796 1.1957 8 8 2.9521 4.0219 2.3716 9 6 3.4278 5.3671 2.2947 10 6 3.6240 5.9204 3.7077 11 7 4.1112 7.2997 3.6287 12 6 3.5429 8.3762 4.2197 13 6 4.3113 9.4392 3.8853 14 6 4.0946 10.8730 4.2956 15 7 4.8881 11.1637 5.4924 16 6 4.8520 12.3935 6.0425 17 8 4.1641 13.2639 5.5422 18 6 5.6451 12.6842 7.2379 19 1 6.1829 11.8905 7.7352 20 6 5.7066 13.9913 7.7367 21 7 4.9624 14.9274 7.2100 22 14 6.8526 14.3969 9.1550 23 1 8.1363 14.9183 8.6208 24 1 6.2229 15.4252 10.0217 25 1 7.1096 13.1693 9.9502 26 7 5.3040 8.9659 3.1238 27 7 5.1568 7.6949 2.9907 28 6 2.2623 2.0714 1.1965 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.0819 1.5617 -2.1326 35 1 2.9028 3.8818 -2.1384 36 1 3.3057 5.0522 -0.0105 37 1 2.7005 5.9798 1.7621 38 1 4.3786 5.3864 1.7621 39 1 4.3515 5.3076 4.2399 40 1 2.6734 5.9010 4.2406 41 1 2.6538 8.3857 4.8326 42 1 3.0384 11.0334 4.5122 43 1 4.4037 11.5334 3.4855 44 1 5.4399 10.4713 5.8884 45 1 5.0053 15.8329 7.5552 46 1 2.0827 1.5622 2.1318 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603175481.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:08 Heat of formation + Delta-G solvation = 41.675450 kcal Electronic energy + Delta-G solvation = -27444.317196 eV Core-core repulsion = 23336.474645 eV Total energy + Delta-G solvation = -4107.842551 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.30994 -40.69553 -38.45801 -37.28849 -35.44269 -34.29693 -33.56329 -32.34300 -31.38215 -30.78395 -29.87003 -29.41325 -27.04667 -25.34879 -25.06156 -24.05271 -22.99273 -21.91416 -21.35244 -20.77264 -19.65959 -18.50709 -17.49345 -17.12994 -16.93578 -16.57173 -16.38216 -16.02722 -15.31175 -15.11916 -14.87775 -14.68208 -14.39349 -14.20615 -13.99273 -13.87263 -13.66954 -13.52490 -13.36118 -12.81523 -12.75149 -12.36351 -12.26559 -12.11610 -11.88328 -11.63904 -11.49794 -11.42682 -11.32824 -11.17029 -11.13705 -10.96490 -10.65023 -10.44619 -10.22639 -10.16088 -9.28829 -9.27055 -8.82653 -8.66934 -7.59712 -7.51140 -6.17706 -4.61456 0.85571 0.99074 1.46055 1.81737 2.54098 2.88610 3.16355 3.23551 3.26886 3.28859 3.91664 4.09480 4.14001 4.24774 4.36397 4.41412 4.49870 4.54960 4.60969 4.69065 4.78571 4.81929 4.85985 4.89175 4.95160 5.03563 5.09415 5.11338 5.18118 5.22472 5.41506 5.46069 5.50379 5.58985 5.71528 5.82065 5.83697 5.99310 6.04192 6.14653 6.27177 6.39296 6.43735 6.49493 6.86725 7.46023 7.92872 8.07588 8.35001 8.50031 9.04724 9.53314 10.60971 10.79122 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.035843 B = 0.001395 C = 0.001380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.997714 B =20062.760678 C =20278.228265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.045 4.045 4 C -0.155 4.155 5 C -0.076 4.076 6 C -0.211 4.211 7 C 0.134 3.866 8 O -0.312 6.312 9 C 0.050 3.950 10 C 0.123 3.877 11 N -0.299 5.299 12 C -0.033 4.033 13 C -0.016 4.016 14 C 0.216 3.784 15 N -0.761 5.761 16 C 0.557 3.443 17 O -0.580 6.580 18 C -0.544 4.544 19 H 0.068 0.932 20 C 0.088 3.912 21 N -0.767 5.767 22 Si 0.907 3.093 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.265 1.265 26 N -0.248 5.248 27 N -0.092 5.092 28 C -0.148 4.148 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.111 0.889 40 H 0.118 0.882 41 H 0.194 0.806 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.381 0.619 45 H 0.268 0.732 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.492 -30.793 -13.143 34.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 C -0.045 4.045 4 C -0.173 4.173 5 C -0.094 4.094 6 C -0.229 4.229 7 C 0.089 3.911 8 O -0.225 6.225 9 C -0.027 4.027 10 C 0.001 3.999 11 N -0.094 5.094 12 C -0.183 4.183 13 C -0.153 4.153 14 C 0.089 3.911 15 N -0.418 5.418 16 C 0.361 3.639 17 O -0.463 6.463 18 C -0.581 4.581 19 H 0.086 0.914 20 C -0.131 4.131 21 N -0.396 5.396 22 Si 0.732 3.268 23 H -0.198 1.198 24 H -0.205 1.205 25 H -0.189 1.189 26 N -0.116 5.116 27 N -0.071 5.071 28 C -0.167 4.167 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.129 0.871 40 H 0.136 0.864 41 H 0.211 0.789 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.213 0.787 45 H 0.079 0.921 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.935 -30.464 -14.210 34.539 hybrid contribution -0.015 0.230 1.381 1.400 sum -7.950 -30.234 -12.829 33.792 Atomic orbital electron populations 1.21751 0.94397 1.01924 1.02411 1.20574 0.96414 0.92128 1.03190 1.19699 0.96559 0.96024 0.92202 1.20974 1.03335 0.95330 0.97654 1.20966 0.96437 0.94448 0.97520 1.21315 1.07936 1.01379 0.92304 1.18891 0.95941 0.92103 0.84154 1.85912 1.81168 1.26624 1.28790 1.22864 1.01082 0.81679 0.97046 1.21630 1.02959 0.77707 0.97593 1.47053 1.19078 1.08639 1.34615 1.23510 1.03998 0.85883 1.04941 1.22404 0.94119 0.98176 1.00628 1.19075 0.96626 0.85101 0.90296 1.46166 1.51128 1.15068 1.29432 1.18223 0.82076 0.79121 0.84509 1.90604 1.44959 1.45297 1.65463 1.20863 1.31475 0.94695 1.11108 0.91412 1.25689 0.94631 0.95996 0.96810 1.70025 1.31493 1.01764 1.36334 0.86365 0.80569 0.78775 0.81075 1.19776 1.20463 1.18933 1.75144 1.20828 1.00034 1.15556 1.78295 1.04286 1.07993 1.16576 1.20269 1.05185 0.92474 0.98778 0.92461 0.92196 0.92388 0.90695 0.90731 0.85876 0.85586 0.85374 0.90941 0.89853 0.87074 0.86397 0.78862 0.91371 0.91316 0.78749 0.92111 0.85145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.89 37.16 0.37 -0.27 16 2 C -0.09 -0.40 6.06 -27.88 -0.17 -0.57 16 3 C -0.04 -0.31 5.13 -104.65 -0.54 -0.84 16 4 C -0.15 -1.05 9.70 -39.56 -0.38 -1.43 16 5 C -0.08 -0.55 10.04 -39.60 -0.40 -0.95 16 6 C -0.21 -1.74 9.04 -39.43 -0.36 -2.10 16 7 C 0.13 1.17 6.69 -39.22 -0.26 0.91 16 8 O -0.31 -2.63 10.14 -19.42 -0.20 -2.83 16 9 C 0.05 0.38 4.87 37.16 0.18 0.56 16 10 C 0.12 0.88 6.83 -4.04 -0.03 0.85 16 11 N -0.30 -3.40 3.44 -61.26 -0.21 -3.61 16 12 C -0.03 -0.40 11.50 -17.04 -0.20 -0.60 16 13 C -0.02 -0.25 6.61 -82.78 -0.55 -0.80 16 14 C 0.22 4.20 6.23 -5.19 -0.03 4.17 16 15 N -0.76 -17.34 5.54 -62.90 -0.35 -17.69 16 16 C 0.56 15.91 7.74 -12.99 -0.10 15.81 16 17 O -0.58 -18.75 15.04 5.19 0.08 -18.67 16 18 C -0.54 -15.50 9.53 -35.63 -0.34 -15.84 16 19 H 0.07 1.78 7.86 -52.48 -0.41 1.37 16 20 C 0.09 2.48 5.49 -17.37 -0.10 2.39 16 21 N -0.77 -23.07 11.85 55.55 0.66 -22.41 16 22 Si 0.91 20.28 29.56 -169.99 -5.03 15.26 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 26 N -0.25 -4.36 12.41 33.29 0.41 -3.95 16 27 N -0.09 -1.38 12.91 60.35 0.78 -0.60 16 28 C -0.15 -1.16 9.64 -39.43 -0.38 -1.54 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 33 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 34 H 0.12 0.61 8.06 -52.48 -0.42 0.18 16 35 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 36 H 0.13 0.98 6.30 -52.49 -0.33 0.65 16 37 H 0.07 0.54 7.65 -51.93 -0.40 0.14 16 38 H 0.08 0.69 7.65 -51.93 -0.40 0.30 16 39 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.12 0.55 8.07 -51.93 -0.42 0.13 16 41 H 0.19 1.67 8.06 -52.49 -0.42 1.25 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 43 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 44 H 0.38 7.96 8.44 -40.82 -0.34 7.62 16 45 H 0.27 7.29 8.29 -40.82 -0.34 6.96 16 46 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 398.74 15.07 6.01 6.01 Total: -1.00 -37.04 398.74 -7.62 -44.67 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.50 Total: 4.08 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -3.28 Total: -0.26 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 1.29 Total: -48.25 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.12 Total: -21.50 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.03 Total: 15.26 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.04 -7.62 -44.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603175481.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.341 kcal (2) G-P(sol) polarization free energy of solvation -37.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds