Wall clock time and date at job start Wed Apr 1 2020 03:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47281 * 2 1 4 4 C 1.38286 * 119.97067 * 270.01874 * 3 2 1 5 5 C 1.38242 * 120.11649 * 180.02562 * 4 3 2 6 6 C 1.38176 * 120.05006 * 359.67534 * 5 4 3 7 7 C 1.38709 * 119.94321 * 0.58067 * 6 5 4 8 8 O 1.35898 * 120.05172 * 179.72386 * 7 6 5 9 9 C 1.42890 * 117.00437 * 359.71803 * 8 7 6 10 10 C 1.53004 * 109.47485 * 180.02562 * 9 8 7 11 11 N 1.46500 * 109.47101 * 180.02562 * 10 9 8 12 12 C 1.35315 * 125.86496 * 125.33179 * 11 10 9 13 13 C 1.35352 * 106.16945 * 180.11631 * 12 11 10 14 14 C 1.50703 * 126.74977 * 179.84958 * 13 12 11 15 15 N 1.46506 * 109.46952 * 94.70524 * 14 13 12 16 16 C 1.34774 * 119.99894 * 179.97438 * 15 14 13 17 17 O 1.21693 * 120.00012 * 359.73007 * 16 15 14 18 18 C 1.46372 * 120.00283 * 180.02562 * 16 15 14 19 19 H 1.08003 * 119.99711 * 354.02911 * 18 16 15 20 20 C 1.40042 * 120.00353 * 174.02723 * 18 16 15 21 21 N 1.30671 * 120.00122 * 6.20001 * 20 18 16 22 22 Si 1.86800 * 120.00350 * 186.19801 * 20 18 16 23 23 H 1.48497 * 109.47350 * 94.98100 * 22 20 18 24 24 H 1.48497 * 109.47171 * 214.98694 * 22 20 18 25 25 H 1.48507 * 109.46667 * 334.98404 * 22 20 18 26 26 N 1.33771 * 106.50216 * 359.58616 * 13 12 11 27 27 N 1.28637 * 108.87976 * 0.26272 * 26 13 12 28 28 C 1.38123 * 119.97285 * 89.99637 * 3 2 1 29 29 H 1.09002 * 109.46707 * 60.00504 * 1 2 3 30 30 H 1.08997 * 109.47305 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47203 * 300.00492 * 1 2 3 32 32 H 1.09001 * 109.47203 * 239.99507 * 2 1 3 33 33 H 1.09002 * 109.46707 * 119.99496 * 2 1 3 34 34 H 1.08012 * 119.94467 * 359.97438 * 4 3 2 35 35 H 1.08001 * 119.97510 * 179.97438 * 5 4 3 36 36 H 1.07999 * 120.02186 * 180.29557 * 6 5 4 37 37 H 1.09001 * 109.47128 * 60.00678 * 9 8 7 38 38 H 1.08998 * 109.47450 * 300.00484 * 9 8 7 39 39 H 1.09001 * 109.46691 * 60.00034 * 10 9 8 40 40 H 1.08998 * 109.46864 * 300.00466 * 10 9 8 41 41 H 1.07991 * 126.91380 * 359.96071 * 12 11 10 42 42 H 1.09005 * 109.47176 * 334.71457 * 14 13 12 43 43 H 1.08991 * 109.47367 * 214.70765 * 14 13 12 44 44 H 0.96998 * 120.00079 * 0.02562 * 15 14 13 45 45 H 0.97004 * 120.00166 * 180.02562 * 21 20 18 46 46 H 1.07995 * 120.02986 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2623 2.0722 -1.1979 5 6 2.7236 3.3754 -1.2015 6 6 2.9498 4.0326 -0.0072 7 6 2.7250 3.3796 1.1957 8 8 2.9521 4.0219 2.3716 9 6 3.4278 5.3671 2.2947 10 6 3.6240 5.9204 3.7077 11 7 4.1112 7.2997 3.6287 12 6 3.5429 8.3762 4.2197 13 6 4.3113 9.4392 3.8853 14 6 4.0946 10.8730 4.2956 15 7 4.8881 11.1637 5.4924 16 6 4.8520 12.3935 6.0425 17 8 4.1641 13.2639 5.5422 18 6 5.6451 12.6842 7.2379 19 1 6.1829 11.8905 7.7352 20 6 5.7066 13.9913 7.7367 21 7 4.9624 14.9274 7.2100 22 14 6.8526 14.3969 9.1550 23 1 8.1363 14.9183 8.6208 24 1 6.2229 15.4252 10.0217 25 1 7.1096 13.1693 9.9502 26 7 5.3040 8.9659 3.1238 27 7 5.1568 7.6949 2.9907 28 6 2.2623 2.0714 1.1965 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.0819 1.5617 -2.1326 35 1 2.9028 3.8818 -2.1384 36 1 3.3057 5.0522 -0.0105 37 1 2.7005 5.9798 1.7621 38 1 4.3786 5.3864 1.7621 39 1 4.3515 5.3076 4.2399 40 1 2.6734 5.9010 4.2406 41 1 2.6538 8.3857 4.8326 42 1 3.0384 11.0334 4.5122 43 1 4.4037 11.5334 3.4855 44 1 5.4399 10.4713 5.8884 45 1 5.0053 15.8329 7.5552 46 1 2.0827 1.5622 2.1318 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603175481.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:07 Heat of formation + Delta-G solvation = 16.009970 kcal Electronic energy + Delta-G solvation = -27445.430134 eV Core-core repulsion = 23336.474645 eV Total energy + Delta-G solvation = -4108.955490 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.40537 -41.26871 -39.37169 -39.00195 -36.49228 -35.29109 -34.73096 -34.44981 -32.26782 -32.03452 -30.50946 -29.98505 -28.93341 -26.81730 -26.02818 -24.58351 -23.53937 -22.99103 -22.30289 -21.69804 -21.45619 -19.44645 -19.04619 -17.92325 -17.88625 -17.44878 -17.20996 -16.96959 -16.84948 -16.19508 -16.01464 -15.90305 -15.53111 -15.19153 -15.05656 -14.74810 -14.52859 -14.42461 -14.17752 -14.04198 -13.73986 -13.49360 -13.35732 -13.09600 -12.93434 -12.76151 -12.71227 -12.63205 -12.55377 -12.34511 -12.01142 -11.98293 -11.85724 -11.81226 -11.63533 -11.21858 -10.91467 -10.49256 -9.81451 -9.80504 -9.49874 -9.24565 -8.28445 -6.83385 0.30300 0.42267 0.45753 1.01545 1.27794 1.42245 1.43348 1.58946 2.21522 2.27426 2.48717 2.73469 3.10166 3.32720 3.39746 3.55002 3.64045 3.77764 3.81689 3.85025 3.98222 4.08803 4.11027 4.15025 4.19998 4.35099 4.36779 4.47252 4.51214 4.54890 4.61996 4.71001 4.76521 4.92283 4.99213 5.04318 5.10098 5.12628 5.27581 5.34238 5.38721 5.45241 5.50513 5.64096 5.76606 5.88134 6.17235 6.26979 6.27523 6.88620 7.36686 7.51835 8.48848 8.68011 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.035843 B = 0.001395 C = 0.001380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.997714 B =20062.760678 C =20278.228265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.047 4.047 4 C -0.160 4.160 5 C -0.084 4.084 6 C -0.226 4.226 7 C 0.116 3.884 8 O -0.315 6.315 9 C 0.054 3.946 10 C 0.118 3.882 11 N -0.284 5.284 12 C 0.000 4.000 13 C -0.044 4.044 14 C 0.223 3.777 15 N -0.749 5.749 16 C 0.541 3.459 17 O -0.629 6.629 18 C -0.573 4.573 19 H 0.085 0.915 20 C 0.031 3.969 21 N -0.820 5.820 22 Si 0.997 3.003 23 H -0.266 1.266 24 H -0.270 1.270 25 H -0.249 1.249 26 N -0.289 5.289 27 N -0.105 5.105 28 C -0.160 4.160 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.128 0.872 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.125 0.875 40 H 0.154 0.846 41 H 0.237 0.763 42 H 0.076 0.924 43 H 0.041 0.959 44 H 0.392 0.608 45 H 0.275 0.725 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.700 -33.332 -11.965 36.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.048 4.048 4 C -0.178 4.178 5 C -0.102 4.102 6 C -0.245 4.245 7 C 0.072 3.928 8 O -0.228 6.228 9 C -0.022 4.022 10 C -0.001 4.001 11 N -0.078 5.078 12 C -0.151 4.151 13 C -0.183 4.183 14 C 0.097 3.903 15 N -0.404 5.404 16 C 0.346 3.654 17 O -0.516 6.516 18 C -0.610 4.610 19 H 0.103 0.897 20 C -0.184 4.184 21 N -0.449 5.449 22 Si 0.816 3.184 23 H -0.191 1.191 24 H -0.195 1.195 25 H -0.172 1.172 26 N -0.156 5.156 27 N -0.084 5.084 28 C -0.179 4.179 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.146 0.854 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.143 0.857 40 H 0.172 0.828 41 H 0.253 0.747 42 H 0.094 0.906 43 H 0.059 0.941 44 H 0.225 0.775 45 H 0.085 0.915 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.130 -33.094 -13.060 36.495 hybrid contribution -0.026 0.853 0.913 1.250 sum -8.156 -32.241 -12.147 35.406 Atomic orbital electron populations 1.21739 0.94076 1.02573 1.01936 1.20625 0.96586 0.90884 1.04067 1.20002 0.95858 0.96999 0.91905 1.21273 1.02722 0.95235 0.98547 1.21236 0.96237 0.94914 0.97851 1.21440 1.08627 1.01624 0.92762 1.19104 0.96769 0.92658 0.84307 1.85882 1.81304 1.26764 1.28847 1.22767 1.00521 0.81626 0.97300 1.22033 1.04998 0.75395 0.97724 1.47329 1.17695 1.10011 1.32772 1.23947 1.03595 0.84516 1.03091 1.21946 0.95979 0.97426 1.02914 1.18920 0.96221 0.87140 0.87990 1.45825 1.50962 1.13648 1.29927 1.18563 0.81746 0.80165 0.84974 1.90558 1.46913 1.47265 1.66876 1.21397 1.31924 0.96001 1.11674 0.89670 1.26930 0.96129 0.95395 0.99982 1.70178 1.33565 1.02590 1.38560 0.85022 0.77564 0.79113 0.76677 1.19084 1.19471 1.17205 1.75086 1.22252 1.01392 1.16887 1.78218 1.05753 1.06958 1.17514 1.20493 1.05383 0.92365 0.99624 0.92724 0.90995 0.93078 0.89571 0.90132 0.83993 0.84135 0.85447 0.90908 0.91054 0.85663 0.82827 0.74703 0.90591 0.94069 0.77547 0.91488 0.84392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 71.98 0.71 -0.32 16 2 C -0.08 -0.65 6.06 29.85 0.18 -0.47 16 3 C -0.05 -0.59 5.13 -19.88 -0.10 -0.69 16 4 C -0.16 -1.96 9.70 22.28 0.22 -1.74 16 5 C -0.08 -1.17 10.04 22.26 0.22 -0.94 16 6 C -0.23 -3.68 9.04 22.37 0.20 -3.47 16 7 C 0.12 1.96 6.69 22.51 0.15 2.11 16 8 O -0.31 -4.93 10.14 -92.41 -0.94 -5.87 16 9 C 0.05 0.75 4.87 71.98 0.35 1.10 16 10 C 0.12 1.35 6.83 86.38 0.59 1.93 16 11 N -0.28 -5.81 3.44 -347.73 -1.20 -7.01 16 12 C 0.00 0.00 11.50 83.49 0.96 0.96 16 13 C -0.04 -1.43 6.61 41.60 0.28 -1.15 16 14 C 0.22 8.89 6.23 85.63 0.53 9.43 16 15 N -0.75 -34.64 5.54 -471.13 -2.61 -37.25 16 16 C 0.54 31.74 7.74 86.36 0.67 32.41 16 17 O -0.63 -42.22 15.04 -4.33 -0.07 -42.29 16 18 C -0.57 -32.88 9.53 24.83 0.24 -32.65 16 19 H 0.09 4.41 7.86 -2.91 -0.02 4.39 16 20 C 0.03 1.74 5.49 85.30 0.47 2.21 16 21 N -0.82 -50.32 11.85 21.83 0.26 -50.06 16 22 Si 1.00 41.28 29.56 68.60 2.03 43.31 16 23 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 24 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 25 H -0.25 -9.55 7.11 99.48 0.71 -8.85 16 26 N -0.29 -10.22 12.41 -48.60 -0.60 -10.83 16 27 N -0.11 -3.06 12.91 37.02 0.48 -2.58 16 28 C -0.16 -2.37 9.64 22.37 0.22 -2.15 16 29 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.09 0.48 8.09 -2.39 -0.02 0.46 16 33 H 0.08 0.53 8.08 -2.39 -0.02 0.51 16 34 H 0.14 1.12 8.06 -2.90 -0.02 1.10 16 35 H 0.14 1.41 8.06 -2.91 -0.02 1.38 16 36 H 0.13 1.97 6.30 -2.91 -0.02 1.95 16 37 H 0.07 1.00 7.65 -2.39 -0.02 0.98 16 38 H 0.07 1.16 7.65 -2.39 -0.02 1.14 16 39 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.15 0.73 8.07 -2.39 -0.02 0.71 16 41 H 0.24 3.01 8.06 -2.92 -0.02 2.98 16 42 H 0.08 2.88 8.14 -2.38 -0.02 2.86 16 43 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.39 16.36 8.44 -92.71 -0.78 15.58 16 45 H 0.28 15.25 8.29 -92.71 -0.77 14.48 16 46 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -83.91 398.74 3.46 -80.45 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: 0.22 Total: 25.54 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 5.88 Total: 6.58 kcal Atomic # 7 Polarization: -104.05 SS G_CDS: -3.67 Total: -107.73 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: -1.00 Total: -48.16 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -83.91 3.46 -80.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603175481.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.458 kcal (2) G-P(sol) polarization free energy of solvation -83.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds