Wall clock time and date at job start Wed Apr 1 2020 03:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30837 * 126.46553 * 2 1 4 4 N 1.28906 * 109.73826 * 180.02562 * 3 2 1 5 5 C 1.29828 * 109.48223 * 0.02569 * 4 3 2 6 6 N 1.34697 * 126.46226 * 179.97438 * 2 1 3 7 7 C 1.46256 * 128.85010 * 359.88137 * 6 2 1 8 8 C 1.53327 * 108.72758 * 197.08915 * 7 6 2 9 9 H 1.08996 * 109.44998 * 69.71354 * 8 7 6 10 10 C 1.50701 * 109.45136 * 189.66913 * 8 7 6 11 11 O 1.21280 * 119.99991 * 25.34196 * 10 8 7 12 12 N 1.34774 * 119.99758 * 205.33932 * 10 8 7 13 13 C 1.46501 * 120.00101 * 3.02990 * 12 10 8 14 14 C 1.50699 * 109.47447 * 272.64965 * 13 12 10 15 15 H 1.08002 * 119.99885 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00261 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00169 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99781 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47344 * 89.99792 * 18 16 14 20 20 H 1.48504 * 109.46606 * 209.99718 * 18 16 14 21 21 H 1.48500 * 109.47008 * 329.99225 * 18 16 14 22 22 C 1.46501 * 120.00194 * 183.03306 * 12 10 8 23 23 C 1.50696 * 109.47221 * 91.19802 * 22 12 10 24 24 C 1.34520 * 125.78680 * 90.02478 * 23 22 12 25 25 C 1.41382 * 106.83750 * 179.97438 * 24 23 22 26 26 C 1.34514 * 106.84523 * 0.02562 * 25 24 23 27 27 O 1.34299 * 125.79429 * 270.03124 * 23 22 12 28 28 C 1.53143 * 109.57637 * 309.70135 * 8 7 6 29 29 C 1.50808 * 128.52440 * 179.84559 * 5 4 3 30 30 H 1.08997 * 109.47638 * 270.04358 * 1 2 3 31 31 H 1.09000 * 109.47042 * 30.04355 * 1 2 3 32 32 H 1.09009 * 109.47087 * 150.04142 * 1 2 3 33 33 H 1.08999 * 109.59566 * 77.32201 * 7 6 2 34 34 H 1.09003 * 109.59525 * 316.86284 * 7 6 2 35 35 H 1.08998 * 109.47143 * 32.65237 * 13 12 10 36 36 H 1.09004 * 109.47092 * 152.64739 * 13 12 10 37 37 H 0.97000 * 120.00338 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.46612 * 331.19913 * 22 12 10 39 39 H 1.08997 * 109.47213 * 211.20564 * 22 12 10 40 40 H 1.07999 * 126.58045 * 359.97438 * 24 23 22 41 41 H 1.08008 * 126.57638 * 180.02562 * 25 24 23 42 42 H 1.07990 * 125.78938 * 179.97438 * 26 25 24 43 43 H 1.08993 * 109.49608 * 189.38403 * 28 8 7 44 44 H 1.08995 * 109.49640 * 309.49193 * 28 8 7 45 45 H 1.08999 * 109.72918 * 315.56943 * 29 5 4 46 46 H 1.09000 * 109.73396 * 76.20722 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5191 0.6812 -0.0005 5 6 3.5815 -0.6156 -0.0015 6 7 2.3075 -1.0833 0.0005 7 6 1.9366 -2.4981 0.0035 8 6 3.1551 -3.3255 0.4295 9 1 3.3625 -3.1492 1.4850 10 6 2.8690 -4.7890 0.2118 11 8 2.0560 -5.1306 -0.6207 12 7 3.5166 -5.7181 0.9424 13 6 4.4494 -5.3041 1.9934 14 6 5.8186 -5.0997 1.3981 15 1 5.9782 -5.2623 0.3424 16 6 6.8676 -4.7051 2.2011 17 7 8.0626 -4.5272 1.6816 18 14 6.5918 -4.4244 4.0272 19 1 6.8295 -5.6915 4.7642 20 1 7.5319 -3.3838 4.5156 21 1 5.1947 -3.9748 4.2534 22 6 3.2879 -7.1422 0.6853 23 6 4.2912 -7.6379 -0.3239 24 6 5.5014 -8.1534 -0.0421 25 6 6.1027 -8.4859 -1.2778 26 6 5.2243 -8.1533 -2.2407 27 8 4.1290 -7.6401 -1.6570 28 6 4.3718 -2.9141 -0.4045 29 6 4.8051 -1.4971 -0.0055 30 1 -0.3634 0.0008 1.0276 31 1 -0.3633 0.8896 -0.5145 32 1 -0.3634 -0.8904 -0.5132 33 1 1.6243 -2.7962 -0.9973 34 1 1.1202 -2.6605 0.7073 35 1 4.1039 -4.3713 2.4390 36 1 4.4984 -6.0768 2.7607 37 1 8.8006 -4.2492 2.2464 38 1 2.2800 -7.2836 0.2953 39 1 3.3999 -7.7016 1.6141 40 1 5.9312 -8.2874 0.9395 41 1 7.0798 -8.9231 -1.4211 42 1 5.3745 -8.2776 -3.3029 43 1 5.1905 -3.6100 -0.2215 44 1 4.1098 -2.9297 -1.4624 45 1 5.5298 -1.1173 -0.7257 46 1 5.2496 -1.5143 0.9896 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611014567.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:07 Heat of formation + Delta-G solvation = 63.094909 kcal Electronic energy + Delta-G solvation = -31470.125605 eV Core-core repulsion = 27363.211872 eV Total energy + Delta-G solvation = -4106.913733 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.12044 -42.04176 -39.83391 -36.59477 -35.59017 -33.92008 -32.80544 -32.44662 -31.58077 -30.60907 -29.92581 -28.10140 -27.20307 -26.02856 -24.28175 -22.83207 -22.70294 -21.22044 -21.17809 -20.31975 -19.64471 -18.39699 -17.38705 -17.21824 -16.80472 -16.42954 -16.17071 -15.79377 -15.20337 -14.94021 -14.61179 -14.22591 -14.21090 -13.88525 -13.77266 -13.43447 -13.21891 -13.07851 -12.80041 -12.66154 -12.56102 -12.33835 -12.25882 -12.18531 -11.89670 -11.76183 -11.37517 -11.30054 -11.16152 -10.95915 -10.77789 -10.62532 -10.43501 -10.12670 -9.91086 -9.71586 -9.46675 -9.32889 -8.83953 -8.75272 -8.25724 -7.92945 -6.33699 -4.35894 1.99094 2.11836 2.57217 2.86808 3.04977 3.06480 3.11473 3.13150 3.19791 3.50747 3.64494 4.13766 4.32727 4.47769 4.59776 4.73301 4.80530 4.93997 4.95680 5.13115 5.23645 5.28932 5.33672 5.40108 5.43160 5.52306 5.54109 5.63371 5.68788 5.75228 5.79466 5.87796 6.04663 6.13956 6.23542 6.29126 6.30294 6.41710 6.46257 6.46415 6.55061 6.71155 6.94934 7.01795 7.04817 7.25865 7.61744 7.79672 8.20291 8.50170 8.72093 8.93941 9.23701 10.77287 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010142 B = 0.004592 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.146006 B = 6096.249284 C = 7638.695949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.167 3.833 3 N -0.304 5.304 4 N -0.299 5.299 5 C 0.187 3.813 6 N -0.467 5.467 7 C 0.119 3.881 8 C -0.113 4.113 9 H 0.108 0.892 10 C 0.534 3.466 11 O -0.558 6.558 12 N -0.583 5.583 13 C 0.203 3.797 14 C -0.539 4.539 15 H 0.086 0.914 16 C 0.084 3.916 17 N -0.880 5.880 18 Si 0.862 3.138 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.266 1.266 22 C 0.201 3.799 23 C -0.028 4.028 24 C -0.167 4.167 25 C -0.211 4.211 26 C -0.053 4.053 27 O -0.172 6.172 28 C -0.121 4.121 29 C -0.028 4.028 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.035 0.965 36 H 0.033 0.967 37 H 0.268 0.732 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.147 0.853 41 H 0.141 0.859 42 H 0.194 0.806 43 H 0.133 0.867 44 H 0.063 0.937 45 H 0.101 0.899 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.189 -3.224 -1.630 10.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.100 4.100 3 N -0.145 5.145 4 N -0.138 5.138 5 C -0.081 4.081 6 N -0.158 5.158 7 C -0.004 4.004 8 C -0.135 4.135 9 H 0.126 0.874 10 C 0.321 3.679 11 O -0.437 6.437 12 N -0.313 5.313 13 C 0.082 3.918 14 C -0.576 4.576 15 H 0.104 0.896 16 C -0.121 4.121 17 N -0.516 5.516 18 Si 0.689 3.311 19 H -0.200 1.200 20 H -0.208 1.208 21 H -0.191 1.191 22 C 0.078 3.922 23 C -0.079 4.079 24 C -0.187 4.187 25 C -0.230 4.230 26 C -0.121 4.121 27 O -0.068 6.068 28 C -0.159 4.159 29 C -0.067 4.067 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.121 0.879 34 H 0.111 0.889 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.078 0.922 38 H 0.110 0.890 39 H 0.122 0.878 40 H 0.165 0.835 41 H 0.159 0.841 42 H 0.210 0.790 43 H 0.151 0.849 44 H 0.081 0.919 45 H 0.119 0.881 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.269 -1.797 -2.128 10.640 hybrid contribution 0.214 -1.240 1.129 1.690 sum -10.055 -3.036 -0.999 10.551 Atomic orbital electron populations 1.20158 0.84058 1.04305 1.03758 1.24562 0.96928 0.83044 1.05488 1.74412 0.96355 1.23864 1.19905 1.74025 1.11972 1.08302 1.19519 1.25031 0.87368 0.92404 1.03279 1.45978 1.07070 1.08405 1.54320 1.21872 0.98064 0.75693 1.04746 1.21520 0.95661 0.92349 1.03942 0.87377 1.19947 0.80179 0.87316 0.80451 1.90650 1.35741 1.82443 1.34890 1.47991 1.43007 1.04369 1.35931 1.20009 0.89588 0.95934 0.86262 1.21235 0.90828 1.47835 0.97748 0.89575 1.24798 0.94948 0.94520 0.97821 1.69861 1.00505 1.45233 1.36036 0.87085 0.78782 0.78805 0.86472 1.19979 1.20782 1.19087 1.19653 0.96164 0.81735 0.94675 1.22710 0.98996 1.04715 0.81492 1.21532 0.94075 1.03647 0.99470 1.21776 1.01205 1.07289 0.92778 1.23862 0.86479 1.03094 0.98702 1.84029 1.38748 1.64254 1.19753 1.21882 0.98608 0.97262 0.98183 1.20233 0.90338 0.91092 1.05056 0.89876 0.88925 0.90499 0.87943 0.88875 0.94696 0.94871 0.92215 0.89043 0.87759 0.83516 0.84089 0.78957 0.84944 0.91859 0.88090 0.87978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.62 10.29 36.00 0.37 -0.25 16 2 C 0.17 2.50 8.07 -155.45 -1.25 1.24 16 3 N -0.30 -5.54 12.23 32.70 0.40 -5.14 16 4 N -0.30 -5.75 12.21 32.76 0.40 -5.35 16 5 C 0.19 3.21 7.75 -155.30 -1.20 2.01 16 6 N -0.47 -7.14 3.11 -110.86 -0.35 -7.48 16 7 C 0.12 1.63 5.75 -4.00 -0.02 1.61 16 8 C -0.11 -1.76 1.88 -91.53 -0.17 -1.94 16 9 H 0.11 1.70 6.02 -51.93 -0.31 1.39 16 10 C 0.53 9.21 6.75 -10.99 -0.07 9.14 16 11 O -0.56 -10.57 15.45 5.56 0.09 -10.49 16 12 N -0.58 -10.04 2.44 -176.44 -0.43 -10.47 16 13 C 0.20 3.76 4.03 -5.19 -0.02 3.74 16 14 C -0.54 -11.89 7.82 -34.44 -0.27 -12.16 16 15 H 0.09 2.19 7.18 -52.49 -0.38 1.81 16 16 C 0.08 1.99 5.47 -17.82 -0.10 1.89 16 17 N -0.88 -22.91 13.96 55.43 0.77 -22.14 16 18 Si 0.86 17.96 27.47 -169.99 -4.67 13.29 16 19 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.27 -5.22 6.54 56.52 0.37 -4.85 16 22 C 0.20 3.14 6.01 -5.20 -0.03 3.10 16 23 C -0.03 -0.49 6.90 -35.62 -0.25 -0.73 16 24 C -0.17 -2.91 10.76 -39.70 -0.43 -3.34 16 25 C -0.21 -3.39 10.91 -39.70 -0.43 -3.83 16 26 C -0.05 -0.81 12.09 29.42 0.36 -0.46 16 27 O -0.17 -3.09 10.65 5.72 0.06 -3.03 16 28 C -0.12 -2.00 5.15 -26.42 -0.14 -2.14 16 29 C -0.03 -0.45 6.34 -27.60 -0.17 -0.62 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.62 8.04 -51.92 -0.42 0.20 16 33 H 0.10 1.43 7.52 -51.93 -0.39 1.04 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.04 0.64 5.07 -51.93 -0.26 0.38 16 36 H 0.03 0.60 7.30 -51.93 -0.38 0.22 16 37 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 38 H 0.09 1.38 7.35 -51.93 -0.38 1.00 16 39 H 0.10 1.35 7.89 -51.93 -0.41 0.94 16 40 H 0.15 2.53 8.06 -52.49 -0.42 2.11 16 41 H 0.14 1.98 8.06 -52.48 -0.42 1.55 16 42 H 0.19 2.16 8.06 -52.49 -0.42 1.74 16 43 H 0.13 2.57 4.88 -51.93 -0.25 2.32 16 44 H 0.06 1.03 8.12 -51.93 -0.42 0.61 16 45 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 46 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 LS Contribution 376.79 15.07 5.68 5.68 Total: -1.00 -30.40 376.79 -8.04 -38.44 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -6.15 Total: 9.41 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -3.84 Total: -2.72 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: 0.80 Total: -50.59 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.15 Total: -13.52 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -4.67 Total: 13.29 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.40 -8.04 -38.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611014567.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.538 kcal (2) G-P(sol) polarization free energy of solvation -30.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds