Wall clock time and date at job start Wed Apr 1 2020 03:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30837 * 126.46553 * 2 1 4 4 N 1.28906 * 109.73826 * 180.02562 * 3 2 1 5 5 C 1.29828 * 109.48223 * 0.02569 * 4 3 2 6 6 N 1.34697 * 126.46226 * 179.97438 * 2 1 3 7 7 C 1.46256 * 128.85010 * 359.88137 * 6 2 1 8 8 C 1.53327 * 108.72758 * 197.08915 * 7 6 2 9 9 H 1.08996 * 109.44998 * 69.71354 * 8 7 6 10 10 C 1.50701 * 109.45136 * 189.66913 * 8 7 6 11 11 O 1.21280 * 119.99991 * 25.34196 * 10 8 7 12 12 N 1.34774 * 119.99758 * 205.33932 * 10 8 7 13 13 C 1.46501 * 120.00101 * 3.02990 * 12 10 8 14 14 C 1.50699 * 109.47447 * 272.64965 * 13 12 10 15 15 H 1.08002 * 119.99885 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00261 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00169 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99781 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47344 * 89.99792 * 18 16 14 20 20 H 1.48504 * 109.46606 * 209.99718 * 18 16 14 21 21 H 1.48500 * 109.47008 * 329.99225 * 18 16 14 22 22 C 1.46501 * 120.00194 * 183.03306 * 12 10 8 23 23 C 1.50696 * 109.47221 * 91.19802 * 22 12 10 24 24 C 1.34520 * 125.78680 * 90.02478 * 23 22 12 25 25 C 1.41382 * 106.83750 * 179.97438 * 24 23 22 26 26 C 1.34514 * 106.84523 * 0.02562 * 25 24 23 27 27 O 1.34299 * 125.79429 * 270.03124 * 23 22 12 28 28 C 1.53143 * 109.57637 * 309.70135 * 8 7 6 29 29 C 1.50808 * 128.52440 * 179.84559 * 5 4 3 30 30 H 1.08997 * 109.47638 * 270.04358 * 1 2 3 31 31 H 1.09000 * 109.47042 * 30.04355 * 1 2 3 32 32 H 1.09009 * 109.47087 * 150.04142 * 1 2 3 33 33 H 1.08999 * 109.59566 * 77.32201 * 7 6 2 34 34 H 1.09003 * 109.59525 * 316.86284 * 7 6 2 35 35 H 1.08998 * 109.47143 * 32.65237 * 13 12 10 36 36 H 1.09004 * 109.47092 * 152.64739 * 13 12 10 37 37 H 0.97000 * 120.00338 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.46612 * 331.19913 * 22 12 10 39 39 H 1.08997 * 109.47213 * 211.20564 * 22 12 10 40 40 H 1.07999 * 126.58045 * 359.97438 * 24 23 22 41 41 H 1.08008 * 126.57638 * 180.02562 * 25 24 23 42 42 H 1.07990 * 125.78938 * 179.97438 * 26 25 24 43 43 H 1.08993 * 109.49608 * 189.38403 * 28 8 7 44 44 H 1.08995 * 109.49640 * 309.49193 * 28 8 7 45 45 H 1.08999 * 109.72918 * 315.56943 * 29 5 4 46 46 H 1.09000 * 109.73396 * 76.20722 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5191 0.6812 -0.0005 5 6 3.5815 -0.6156 -0.0015 6 7 2.3075 -1.0833 0.0005 7 6 1.9366 -2.4981 0.0035 8 6 3.1551 -3.3255 0.4295 9 1 3.3625 -3.1492 1.4850 10 6 2.8690 -4.7890 0.2118 11 8 2.0560 -5.1306 -0.6207 12 7 3.5166 -5.7181 0.9424 13 6 4.4494 -5.3041 1.9934 14 6 5.8186 -5.0997 1.3981 15 1 5.9782 -5.2623 0.3424 16 6 6.8676 -4.7051 2.2011 17 7 8.0626 -4.5272 1.6816 18 14 6.5918 -4.4244 4.0272 19 1 6.8295 -5.6915 4.7642 20 1 7.5319 -3.3838 4.5156 21 1 5.1947 -3.9748 4.2534 22 6 3.2879 -7.1422 0.6853 23 6 4.2912 -7.6379 -0.3239 24 6 5.5014 -8.1534 -0.0421 25 6 6.1027 -8.4859 -1.2778 26 6 5.2243 -8.1533 -2.2407 27 8 4.1290 -7.6401 -1.6570 28 6 4.3718 -2.9141 -0.4045 29 6 4.8051 -1.4971 -0.0055 30 1 -0.3634 0.0008 1.0276 31 1 -0.3633 0.8896 -0.5145 32 1 -0.3634 -0.8904 -0.5132 33 1 1.6243 -2.7962 -0.9973 34 1 1.1202 -2.6605 0.7073 35 1 4.1039 -4.3713 2.4390 36 1 4.4984 -6.0768 2.7607 37 1 8.8006 -4.2492 2.2464 38 1 2.2800 -7.2836 0.2953 39 1 3.3999 -7.7016 1.6141 40 1 5.9312 -8.2874 0.9395 41 1 7.0798 -8.9231 -1.4211 42 1 5.3745 -8.2776 -3.3029 43 1 5.1905 -3.6100 -0.2215 44 1 4.1098 -2.9297 -1.4624 45 1 5.5298 -1.1173 -0.7257 46 1 5.2496 -1.5143 0.9896 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611014567.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:06 Heat of formation + Delta-G solvation = 46.786680 kcal Electronic energy + Delta-G solvation = -31470.832783 eV Core-core repulsion = 27363.211872 eV Total energy + Delta-G solvation = -4107.620911 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.37177 -43.34099 -41.20430 -37.88533 -37.04075 -35.13488 -34.52458 -33.77897 -32.82641 -31.80882 -31.18702 -29.68870 -28.30874 -27.29521 -25.58207 -24.35863 -24.10829 -22.53217 -22.37055 -21.60205 -20.93077 -19.76599 -19.02559 -18.54167 -18.19044 -17.62038 -17.48751 -17.14364 -16.53440 -16.40511 -15.90224 -15.73550 -15.47139 -15.13774 -14.90590 -14.71398 -14.62600 -14.32879 -13.98069 -13.91987 -13.69574 -13.60002 -13.47206 -13.45644 -13.22855 -13.16618 -12.78920 -12.61440 -12.59314 -12.43148 -12.19948 -12.02730 -11.95396 -11.47579 -11.37751 -11.12636 -10.86419 -10.69136 -10.62422 -10.02032 -9.68622 -9.24785 -8.16996 -6.20121 0.79018 0.82524 1.38441 1.41944 1.46636 1.51259 1.52359 1.75829 1.82046 2.28450 2.32776 2.40210 3.11854 3.18577 3.31757 3.32797 3.58125 3.59971 3.86582 3.94752 4.07013 4.09110 4.22030 4.23230 4.27030 4.34389 4.45708 4.52779 4.56135 4.65543 4.68063 4.71032 4.82933 4.88303 4.96077 5.01051 5.03095 5.04550 5.14452 5.20937 5.27563 5.31847 5.49918 5.57157 5.72600 5.88604 6.22433 6.34685 6.52771 6.85347 7.12313 7.42165 7.66543 8.97113 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010142 B = 0.004592 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.146006 B = 6096.249284 C = 7638.695949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.182 3.818 3 N -0.344 5.344 4 N -0.333 5.333 5 C 0.178 3.822 6 N -0.467 5.467 7 C 0.126 3.874 8 C -0.109 4.109 9 H 0.110 0.890 10 C 0.534 3.466 11 O -0.572 6.572 12 N -0.584 5.584 13 C 0.205 3.795 14 C -0.511 4.511 15 H 0.047 0.953 16 C 0.035 3.965 17 N -0.932 5.932 18 Si 0.914 3.086 19 H -0.271 1.271 20 H -0.298 1.298 21 H -0.238 1.238 22 C 0.196 3.804 23 C -0.042 4.042 24 C -0.184 4.184 25 C -0.230 4.230 26 C -0.049 4.049 27 O -0.192 6.192 28 C -0.110 4.110 29 C -0.020 4.020 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.125 0.875 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.263 0.737 38 H 0.099 0.901 39 H 0.132 0.868 40 H 0.142 0.858 41 H 0.157 0.843 42 H 0.232 0.768 43 H 0.102 0.898 44 H 0.061 0.939 45 H 0.102 0.898 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.963 -3.750 -0.837 13.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.086 4.086 3 N -0.185 5.185 4 N -0.171 5.171 5 C -0.091 4.091 6 N -0.158 5.158 7 C 0.004 3.996 8 C -0.131 4.131 9 H 0.128 0.872 10 C 0.322 3.678 11 O -0.453 6.453 12 N -0.313 5.313 13 C 0.084 3.916 14 C -0.549 4.549 15 H 0.065 0.935 16 C -0.165 4.165 17 N -0.572 5.572 18 Si 0.740 3.260 19 H -0.196 1.196 20 H -0.225 1.225 21 H -0.162 1.162 22 C 0.074 3.926 23 C -0.092 4.092 24 C -0.204 4.204 25 C -0.249 4.249 26 C -0.116 4.116 27 O -0.088 6.088 28 C -0.149 4.149 29 C -0.060 4.060 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.143 0.857 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.117 0.883 39 H 0.150 0.850 40 H 0.160 0.840 41 H 0.175 0.825 42 H 0.248 0.752 43 H 0.120 0.880 44 H 0.079 0.921 45 H 0.121 0.879 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.080 -2.337 -1.329 13.354 hybrid contribution 1.064 -1.130 0.752 1.725 sum -12.016 -3.467 -0.577 12.519 Atomic orbital electron populations 1.20465 0.80173 1.05980 1.05659 1.25517 0.98767 0.81958 1.02331 1.74344 0.96386 1.25510 1.22221 1.73935 1.13106 1.09417 1.20685 1.25013 0.88281 0.92107 1.03699 1.46092 1.06444 1.09122 1.54100 1.21936 0.97699 0.74303 1.05689 1.21465 0.96049 0.91769 1.03779 0.87169 1.20147 0.79802 0.87831 0.79995 1.90643 1.36481 1.82811 1.35372 1.47985 1.42458 1.05211 1.35636 1.19915 0.87757 0.97175 0.86746 1.21247 0.92456 1.45401 0.95800 0.93527 1.25431 0.94602 0.94859 1.01575 1.70013 1.01633 1.48092 1.37428 0.86227 0.79690 0.78294 0.81837 1.19598 1.22483 1.16153 1.19942 0.96053 0.81034 0.95585 1.23021 0.99458 1.05045 0.81704 1.21672 0.94591 1.04279 0.99870 1.22084 1.02244 1.07968 0.92635 1.24620 0.85336 1.01367 1.00292 1.84024 1.39868 1.64751 1.20161 1.21656 0.98157 0.96684 0.98353 1.20123 0.90366 0.90741 1.04749 0.87672 0.87819 0.88266 0.87807 0.85730 0.93319 0.93022 0.92806 0.88326 0.85022 0.83996 0.82541 0.75219 0.87971 0.92068 0.87924 0.88583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.99 10.29 71.23 0.73 -0.26 16 2 C 0.18 5.03 8.07 138.14 1.11 6.15 16 3 N -0.34 -12.25 12.23 -50.46 -0.62 -12.87 16 4 N -0.33 -12.79 12.21 -50.27 -0.61 -13.41 16 5 C 0.18 6.03 7.75 138.14 1.07 7.10 16 6 N -0.47 -13.34 3.11 -504.64 -1.57 -14.91 16 7 C 0.13 3.09 5.75 86.54 0.50 3.59 16 8 C -0.11 -3.22 1.88 -11.38 -0.02 -3.24 16 9 H 0.11 3.22 6.02 -2.39 -0.01 3.20 16 10 C 0.53 17.48 6.75 87.66 0.59 18.08 16 11 O -0.57 -20.58 15.45 -3.03 -0.05 -20.62 16 12 N -0.58 -19.05 2.44 -830.51 -2.03 -21.08 16 13 C 0.21 7.20 4.03 85.63 0.35 7.54 16 14 C -0.51 -22.57 7.82 25.60 0.20 -22.37 16 15 H 0.05 2.44 7.18 -2.91 -0.02 2.42 16 16 C 0.04 1.67 5.47 84.65 0.46 2.14 16 17 N -0.93 -50.18 13.96 21.45 0.30 -49.88 16 18 Si 0.91 36.26 27.47 68.60 1.88 38.15 16 19 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 20 H -0.30 -12.59 7.11 99.48 0.71 -11.89 16 21 H -0.24 -8.30 6.54 99.48 0.65 -7.65 16 22 C 0.20 5.79 6.01 85.63 0.51 6.30 16 23 C -0.04 -1.42 6.90 24.83 0.17 -1.25 16 24 C -0.18 -6.40 10.76 22.19 0.24 -6.17 16 25 C -0.23 -7.32 10.91 22.19 0.24 -7.08 16 26 C -0.05 -1.44 12.09 66.97 0.81 -0.63 16 27 O -0.19 -6.75 10.65 -2.45 -0.03 -6.78 16 28 C -0.11 -3.64 5.15 30.79 0.16 -3.49 16 29 C -0.02 -0.66 6.34 30.03 0.19 -0.47 16 30 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.10 1.14 8.04 -2.38 -0.02 1.12 16 33 H 0.10 2.59 7.52 -2.39 -0.02 2.58 16 34 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.05 1.63 5.07 -2.39 -0.01 1.61 16 36 H 0.05 1.68 7.30 -2.38 -0.02 1.66 16 37 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 38 H 0.10 2.77 7.35 -2.39 -0.02 2.76 16 39 H 0.13 3.07 7.89 -2.39 -0.02 3.05 16 40 H 0.14 4.95 8.06 -2.91 -0.02 4.93 16 41 H 0.16 4.32 8.06 -2.91 -0.02 4.30 16 42 H 0.23 4.66 8.06 -2.92 -0.02 4.64 16 43 H 0.10 4.08 4.88 -2.39 -0.01 4.07 16 44 H 0.06 2.01 8.12 -2.39 -0.02 1.99 16 45 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 46 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -67.83 376.79 5.56 -62.27 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: 0.96 Total: 33.21 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 7.32 Total: 5.93 kcal Atomic # 7 Polarization: -107.62 SS G_CDS: -4.53 Total: -112.16 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.07 Total: -27.40 kcal Atomic # 14 Polarization: 36.26 SS G_CDS: 1.88 Total: 38.15 kcal Total: -67.83 5.56 -62.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611014567.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.057 kcal (2) G-P(sol) polarization free energy of solvation -67.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds