Wall clock time and date at job start Wed Apr 1 2020 03:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00186 * 2 1 4 4 C 1.53003 * 109.47200 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47291 * 64.99551 * 4 3 2 6 6 C 1.46497 * 120.00399 * 270.00452 * 5 4 3 7 7 C 1.50696 * 109.46761 * 263.61812 * 6 5 4 8 8 H 1.07997 * 120.00393 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99774 * 179.97438 * 7 6 5 10 10 N 1.31520 * 120.00232 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00092 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47523 * 59.99932 * 11 9 7 13 13 H 1.48501 * 109.47223 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47100 * 300.00080 * 11 9 7 15 15 C 1.34780 * 119.99470 * 89.99943 * 5 4 3 16 16 O 1.21558 * 120.00194 * 4.31252 * 15 5 4 17 17 C 1.47836 * 119.99493 * 184.31084 * 15 5 4 18 18 N 1.34565 * 126.02725 * 353.80886 * 17 15 5 19 19 C 1.30864 * 107.29203 * 179.97438 * 18 17 15 20 20 C 1.50697 * 126.20844 * 179.97438 * 19 18 17 21 21 N 1.34888 * 107.59254 * 359.97438 * 19 18 17 22 22 C 1.40141 * 125.77452 * 180.02562 * 21 19 18 23 23 C 1.38846 * 120.06966 * 145.00240 * 22 21 19 24 24 C 1.38111 * 119.93353 * 179.97438 * 23 22 21 25 25 C 1.38276 * 120.06813 * 0.02562 * 24 23 22 26 26 C 1.38281 * 120.13918 * 359.97438 * 25 24 23 27 27 C 1.38117 * 120.06594 * 0.02562 * 26 25 24 28 28 N 1.28857 * 108.45443 * 0.26829 * 21 19 18 29 29 H 1.08998 * 109.47446 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47413 * 300.00428 * 1 2 3 31 31 H 1.09008 * 109.47136 * 59.99699 * 1 2 3 32 32 H 1.08999 * 109.47255 * 59.99665 * 3 2 1 33 33 H 1.08996 * 109.47178 * 299.99611 * 3 2 1 34 34 H 1.09003 * 109.46946 * 304.99736 * 4 3 2 35 35 H 1.09000 * 109.47124 * 185.00201 * 4 3 2 36 36 H 1.09000 * 109.47096 * 23.61944 * 6 5 4 37 37 H 1.08995 * 109.47252 * 143.61613 * 6 5 4 38 38 H 0.96989 * 120.00066 * 180.02562 * 10 9 7 39 39 H 1.09001 * 109.47241 * 270.02194 * 20 19 18 40 40 H 1.09002 * 109.47423 * 30.01640 * 20 19 18 41 41 H 1.08998 * 109.47665 * 150.01607 * 20 19 18 42 42 H 1.08002 * 120.03201 * 0.02562 * 23 22 21 43 43 H 1.08003 * 119.96528 * 180.02562 * 24 23 22 44 44 H 1.08008 * 119.93473 * 179.72255 * 25 24 23 45 45 H 1.07994 * 119.97204 * 180.02562 * 26 25 24 46 46 H 1.07998 * 120.03750 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 4.1051 -0.8922 -1.3427 7 6 5.5392 -1.2851 -1.0977 8 1 6.2802 -0.5258 -0.8957 9 6 5.9054 -2.6139 -1.1316 10 7 5.0030 -3.5387 -1.3772 11 14 7.6828 -3.1010 -0.8273 12 1 8.0951 -2.6498 0.5262 13 1 7.8141 -4.5774 -0.9186 14 1 8.5526 -2.4631 -1.8479 15 6 4.2615 1.3336 -2.3218 16 8 4.2300 2.5449 -2.2248 17 6 4.6134 0.7042 -3.6124 18 7 4.7988 -0.6112 -3.8269 19 6 5.0944 -0.7609 -5.0929 20 6 5.3860 -2.0643 -5.7909 21 7 5.0908 0.4630 -5.6600 22 6 5.3585 0.7427 -7.0068 23 6 4.6832 1.7704 -7.6515 24 6 4.9496 2.0440 -8.9788 25 6 5.8874 1.2952 -9.6658 26 6 6.5616 0.2711 -9.0266 27 6 6.2997 -0.0074 -7.6994 28 7 4.8046 1.3320 -4.7527 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.8514 0.5682 0.8410 35 1 3.9786 2.1764 0.0890 36 1 3.4670 -1.3607 -0.5935 37 1 3.8023 -1.2232 -2.3361 38 1 5.2605 -4.4735 -1.4007 39 1 6.4544 -2.2736 -5.7382 40 1 4.8339 -2.8685 -5.3044 41 1 5.0806 -1.9938 -6.8348 42 1 3.9509 2.3558 -7.1153 43 1 4.4249 2.8435 -9.4806 44 1 6.0908 1.5081 -10.7049 45 1 7.2938 -0.3117 -9.5656 46 1 6.8268 -0.8071 -7.2005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731687255.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:53 Heat of formation + Delta-G solvation = 66.039496 kcal Electronic energy + Delta-G solvation = -30607.282980 eV Core-core repulsion = 26500.496934 eV Total energy + Delta-G solvation = -4106.786046 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.15845 -39.44233 -38.84309 -37.29693 -34.92305 -34.21462 -32.92666 -32.37218 -31.14179 -30.29679 -29.29997 -27.75848 -26.84517 -26.01418 -24.60898 -23.23357 -22.72525 -22.52794 -21.51636 -20.52355 -18.66588 -17.97361 -16.76692 -16.52053 -16.35161 -16.12068 -15.91578 -15.53950 -15.08771 -14.86345 -14.63412 -14.51211 -14.27699 -13.86450 -13.79222 -13.61873 -13.16244 -12.96127 -12.79793 -12.45600 -12.21634 -12.03487 -11.87077 -11.73098 -11.69490 -11.47191 -11.34366 -10.98997 -10.82701 -10.77037 -10.53700 -10.33545 -10.02492 -9.59495 -9.41236 -9.30161 -9.28909 -9.22813 -9.09587 -8.50968 -8.17641 -7.57990 -5.86175 -3.86172 0.70543 1.05147 2.03362 2.46918 2.73378 3.37451 3.40953 3.44903 3.45829 3.74815 4.07200 4.22408 4.48125 4.51239 4.57940 4.62411 4.80771 4.92273 5.06475 5.07358 5.27137 5.42656 5.42916 5.49147 5.54115 5.62992 5.64817 5.68877 5.69659 5.72760 5.74499 5.90223 6.02331 6.05521 6.07222 6.13405 6.19358 6.39414 6.46280 6.58608 6.90196 6.96674 7.09180 7.53292 7.73837 7.91103 8.07669 8.36890 8.43829 8.57357 8.98670 9.15963 9.73902 11.22136 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009328 B = 0.004136 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3000.946759 B = 6768.880050 C = 8764.541593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.373 6.373 3 C 0.047 3.953 4 C 0.122 3.878 5 N -0.566 5.566 6 C 0.230 3.770 7 C -0.507 4.507 8 H 0.048 0.952 9 C 0.073 3.927 10 N -0.888 5.888 11 Si 0.883 3.117 12 H -0.280 1.280 13 H -0.288 1.288 14 H -0.282 1.282 15 C 0.610 3.390 16 O -0.560 6.560 17 C 0.169 3.831 18 N -0.397 5.397 19 C 0.200 3.800 20 C -0.070 4.070 21 N -0.268 5.268 22 C 0.140 3.860 23 C -0.102 4.102 24 C -0.104 4.104 25 C -0.118 4.118 26 C -0.102 4.102 27 C -0.120 4.120 28 N -0.272 5.272 29 H 0.083 0.917 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.042 0.958 37 H 0.076 0.924 38 H 0.258 0.742 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.076 0.924 42 H 0.136 0.864 43 H 0.132 0.868 44 H 0.129 0.871 45 H 0.134 0.866 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.147 5.271 -13.489 14.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.292 6.292 3 C -0.030 4.030 4 C -0.002 4.002 5 N -0.296 5.296 6 C 0.111 3.889 7 C -0.546 4.546 8 H 0.066 0.934 9 C -0.129 4.129 10 N -0.528 5.528 11 Si 0.712 3.288 12 H -0.205 1.205 13 H -0.214 1.214 14 H -0.208 1.208 15 C 0.394 3.606 16 O -0.439 6.439 17 C -0.111 4.111 18 N -0.121 5.121 19 C -0.073 4.073 20 C -0.129 4.129 21 N -0.058 5.058 22 C 0.049 3.951 23 C -0.121 4.121 24 C -0.123 4.123 25 C -0.137 4.137 26 C -0.120 4.120 27 C -0.141 4.141 28 N -0.108 5.108 29 H 0.102 0.898 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.060 0.940 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.122 0.878 41 H 0.094 0.906 42 H 0.154 0.846 43 H 0.150 0.850 44 H 0.147 0.853 45 H 0.152 0.848 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.191 5.923 -13.127 14.750 hybrid contribution 0.995 -0.302 0.055 1.041 sum -2.196 5.622 -13.071 14.397 Atomic orbital electron populations 1.22676 0.82197 1.02401 0.99101 1.88073 1.18626 1.27293 1.95186 1.23027 0.95112 0.85050 0.99854 1.21435 0.91202 0.99878 0.87685 1.48050 1.61764 1.10872 1.08909 1.20003 0.96983 0.71098 1.00840 1.21254 0.93925 0.91976 1.47487 0.93373 1.24696 0.96383 0.96315 0.95492 1.69931 1.32754 1.00338 1.49757 0.86820 0.86267 0.77091 0.78642 1.20544 1.21378 1.20764 1.16322 0.77701 0.85152 0.81464 1.90702 1.55502 1.13415 1.84240 1.23784 1.05288 0.87949 0.94093 1.72247 1.15139 1.14938 1.09745 1.25436 1.02177 0.89379 0.90307 1.20398 1.03643 0.90215 0.98670 1.44629 1.48844 1.05488 1.06844 1.17604 0.98362 0.99086 0.80021 1.21117 0.99467 0.96713 0.94848 1.21082 0.98014 0.99730 0.93449 1.21290 0.96420 0.95665 1.00323 1.21020 0.99705 0.97753 0.93560 1.21191 0.96627 1.00816 0.95427 1.74351 1.19567 1.18727 0.98137 0.89847 0.94731 0.94719 0.92954 0.93429 0.89007 0.89154 0.94004 0.90678 0.93212 0.89507 0.87802 0.90555 0.84613 0.84971 0.85329 0.84786 0.84417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.37 -6.92 9.65 -35.23 -0.34 -7.26 16 3 C 0.05 0.81 6.28 37.16 0.23 1.04 16 4 C 0.12 2.35 5.82 -4.04 -0.02 2.33 16 5 N -0.57 -13.18 2.44 -176.18 -0.43 -13.61 16 6 C 0.23 5.94 4.53 -5.20 -0.02 5.92 16 7 C -0.51 -14.05 8.43 -34.44 -0.29 -14.34 16 8 H 0.05 1.38 7.81 -52.49 -0.41 0.97 16 9 C 0.07 2.00 5.46 -17.82 -0.10 1.91 16 10 N -0.89 -25.16 13.29 55.43 0.74 -24.42 16 11 Si 0.88 21.56 29.54 -169.99 -5.02 16.54 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 C 0.61 14.75 7.62 -12.33 -0.09 14.65 16 16 O -0.56 -13.93 16.64 5.32 0.09 -13.85 16 17 C 0.17 3.98 7.64 -156.30 -1.19 2.79 16 18 N -0.40 -9.22 7.18 -8.47 -0.06 -9.28 16 19 C 0.20 3.81 7.79 -155.25 -1.21 2.60 16 20 C -0.07 -0.99 8.66 36.00 0.31 -0.68 16 21 N -0.27 -4.89 3.47 -8.00 -0.03 -4.92 16 22 C 0.14 2.00 6.23 -83.60 -0.52 1.48 16 23 C -0.10 -1.27 9.71 -39.40 -0.38 -1.65 16 24 C -0.10 -0.96 10.04 -39.61 -0.40 -1.36 16 25 C -0.12 -0.94 10.04 -39.55 -0.40 -1.34 16 26 C -0.10 -0.86 10.04 -39.61 -0.40 -1.26 16 27 C -0.12 -1.35 8.25 -39.40 -0.33 -1.67 16 28 N -0.27 -5.88 11.77 32.08 0.38 -5.50 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.03 0.45 8.14 -51.92 -0.42 0.03 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.09 1.75 8.07 -51.93 -0.42 1.33 16 35 H 0.09 1.65 7.37 -51.93 -0.38 1.27 16 36 H 0.04 1.16 7.25 -51.93 -0.38 0.78 16 37 H 0.08 2.06 5.28 -51.93 -0.27 1.79 16 38 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.09 1.09 7.72 -51.93 -0.40 0.69 16 40 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 41 H 0.08 0.82 6.85 -51.93 -0.36 0.47 16 42 H 0.14 1.80 8.03 -52.49 -0.42 1.37 16 43 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 44 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 45 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 46 H 0.14 1.43 6.05 -52.49 -0.32 1.11 16 LS Contribution 388.60 15.07 5.86 5.86 Total: -1.00 -35.05 388.60 -8.81 -43.86 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.30 Total: 0.58 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: -3.70 Total: 11.99 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: 0.60 Total: -57.73 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.25 Total: -21.10 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.05 -8.81 -43.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731687255.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.904 kcal (2) G-P(sol) polarization free energy of solvation -35.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds