Wall clock time and date at job start Wed Apr 1 2020 03:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00186 * 2 1 4 4 C 1.53003 * 109.47200 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47291 * 64.99551 * 4 3 2 6 6 C 1.46497 * 120.00399 * 270.00452 * 5 4 3 7 7 C 1.50696 * 109.46761 * 263.61812 * 6 5 4 8 8 H 1.07997 * 120.00393 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99774 * 179.97438 * 7 6 5 10 10 N 1.31520 * 120.00232 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00092 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47523 * 59.99932 * 11 9 7 13 13 H 1.48501 * 109.47223 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47100 * 300.00080 * 11 9 7 15 15 C 1.34780 * 119.99470 * 89.99943 * 5 4 3 16 16 O 1.21558 * 120.00194 * 4.31252 * 15 5 4 17 17 C 1.47836 * 119.99493 * 184.31084 * 15 5 4 18 18 N 1.34565 * 126.02725 * 353.80886 * 17 15 5 19 19 C 1.30864 * 107.29203 * 179.97438 * 18 17 15 20 20 C 1.50697 * 126.20844 * 179.97438 * 19 18 17 21 21 N 1.34888 * 107.59254 * 359.97438 * 19 18 17 22 22 C 1.40141 * 125.77452 * 180.02562 * 21 19 18 23 23 C 1.38846 * 120.06966 * 145.00240 * 22 21 19 24 24 C 1.38111 * 119.93353 * 179.97438 * 23 22 21 25 25 C 1.38276 * 120.06813 * 0.02562 * 24 23 22 26 26 C 1.38281 * 120.13918 * 359.97438 * 25 24 23 27 27 C 1.38117 * 120.06594 * 0.02562 * 26 25 24 28 28 N 1.28857 * 108.45443 * 0.26829 * 21 19 18 29 29 H 1.08998 * 109.47446 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47413 * 300.00428 * 1 2 3 31 31 H 1.09008 * 109.47136 * 59.99699 * 1 2 3 32 32 H 1.08999 * 109.47255 * 59.99665 * 3 2 1 33 33 H 1.08996 * 109.47178 * 299.99611 * 3 2 1 34 34 H 1.09003 * 109.46946 * 304.99736 * 4 3 2 35 35 H 1.09000 * 109.47124 * 185.00201 * 4 3 2 36 36 H 1.09000 * 109.47096 * 23.61944 * 6 5 4 37 37 H 1.08995 * 109.47252 * 143.61613 * 6 5 4 38 38 H 0.96989 * 120.00066 * 180.02562 * 10 9 7 39 39 H 1.09001 * 109.47241 * 270.02194 * 20 19 18 40 40 H 1.09002 * 109.47423 * 30.01640 * 20 19 18 41 41 H 1.08998 * 109.47665 * 150.01607 * 20 19 18 42 42 H 1.08002 * 120.03201 * 0.02562 * 23 22 21 43 43 H 1.08003 * 119.96528 * 180.02562 * 24 23 22 44 44 H 1.08008 * 119.93473 * 179.72255 * 25 24 23 45 45 H 1.07994 * 119.97204 * 180.02562 * 26 25 24 46 46 H 1.07998 * 120.03750 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 4.1051 -0.8922 -1.3427 7 6 5.5392 -1.2851 -1.0977 8 1 6.2802 -0.5258 -0.8957 9 6 5.9054 -2.6139 -1.1316 10 7 5.0030 -3.5387 -1.3772 11 14 7.6828 -3.1010 -0.8273 12 1 8.0951 -2.6498 0.5262 13 1 7.8141 -4.5774 -0.9186 14 1 8.5526 -2.4631 -1.8479 15 6 4.2615 1.3336 -2.3218 16 8 4.2300 2.5449 -2.2248 17 6 4.6134 0.7042 -3.6124 18 7 4.7988 -0.6112 -3.8269 19 6 5.0944 -0.7609 -5.0929 20 6 5.3860 -2.0643 -5.7909 21 7 5.0908 0.4630 -5.6600 22 6 5.3585 0.7427 -7.0068 23 6 4.6832 1.7704 -7.6515 24 6 4.9496 2.0440 -8.9788 25 6 5.8874 1.2952 -9.6658 26 6 6.5616 0.2711 -9.0266 27 6 6.2997 -0.0074 -7.6994 28 7 4.8046 1.3320 -4.7527 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.8514 0.5682 0.8410 35 1 3.9786 2.1764 0.0890 36 1 3.4670 -1.3607 -0.5935 37 1 3.8023 -1.2232 -2.3361 38 1 5.2605 -4.4735 -1.4007 39 1 6.4544 -2.2736 -5.7382 40 1 4.8339 -2.8685 -5.3044 41 1 5.0806 -1.9938 -6.8348 42 1 3.9509 2.3558 -7.1153 43 1 4.4249 2.8435 -9.4806 44 1 6.0908 1.5081 -10.7049 45 1 7.2938 -0.3117 -9.5656 46 1 6.8268 -0.8071 -7.2005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731687255.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:52 Heat of formation + Delta-G solvation = 44.960752 kcal Electronic energy + Delta-G solvation = -30608.197023 eV Core-core repulsion = 26500.496934 eV Total energy + Delta-G solvation = -4107.700089 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.65487 -40.82603 -40.10492 -38.71639 -36.75698 -35.50516 -34.44420 -34.28930 -31.98617 -31.70248 -30.55893 -29.14973 -28.75018 -27.29618 -26.07282 -24.71825 -24.19529 -23.78148 -22.84601 -21.77274 -20.36118 -19.22358 -18.54462 -18.06953 -17.74327 -17.58256 -17.26754 -16.98945 -16.62134 -16.34057 -16.05020 -15.80342 -15.48329 -15.29419 -15.04951 -14.67465 -14.54198 -14.19898 -14.12551 -13.91237 -13.66293 -13.49496 -13.42655 -13.19062 -12.90739 -12.81047 -12.72356 -12.58888 -12.49071 -12.13569 -12.09814 -11.94686 -11.71428 -11.59137 -11.28984 -10.92817 -10.66913 -10.60284 -10.27441 -10.06342 -9.64507 -9.42886 -7.98606 -6.05996 -0.33098 0.28037 0.57656 1.15631 1.21369 1.42099 1.43198 1.50851 2.07437 2.30567 2.51280 2.66053 2.92410 3.07726 3.32914 3.40586 3.58100 3.83862 3.87223 4.10756 4.17220 4.18398 4.31756 4.36511 4.36836 4.50888 4.51270 4.53951 4.56064 4.57804 4.58218 4.83012 4.84418 4.86281 4.96790 5.05033 5.09353 5.13435 5.31487 5.41907 5.45253 5.60835 5.65044 5.89504 5.95049 6.01077 6.26711 6.31238 6.46370 6.87818 7.04377 7.22589 7.57233 9.09144 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009328 B = 0.004136 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3000.946759 B = 6768.880050 C = 8764.541593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.409 6.409 3 C 0.056 3.944 4 C 0.113 3.887 5 N -0.569 5.569 6 C 0.254 3.746 7 C -0.517 4.517 8 H 0.030 0.970 9 C 0.037 3.963 10 N -0.910 5.910 11 Si 0.941 3.059 12 H -0.278 1.278 13 H -0.275 1.275 14 H -0.283 1.283 15 C 0.603 3.397 16 O -0.578 6.578 17 C 0.132 3.868 18 N -0.441 5.441 19 C 0.197 3.803 20 C -0.065 4.065 21 N -0.252 5.252 22 C 0.090 3.910 23 C -0.119 4.119 24 C -0.101 4.101 25 C -0.100 4.100 26 C -0.093 4.093 27 C -0.121 4.121 28 N -0.284 5.284 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.092 0.908 33 H 0.037 0.963 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.019 0.981 37 H 0.061 0.939 38 H 0.262 0.738 39 H 0.105 0.895 40 H 0.091 0.909 41 H 0.112 0.888 42 H 0.115 0.885 43 H 0.159 0.841 44 H 0.170 0.830 45 H 0.172 0.828 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.965 4.933 -16.343 17.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.329 6.329 3 C -0.021 4.021 4 C -0.009 4.009 5 N -0.298 5.298 6 C 0.134 3.866 7 C -0.556 4.556 8 H 0.048 0.952 9 C -0.163 4.163 10 N -0.550 5.550 11 Si 0.767 3.233 12 H -0.204 1.204 13 H -0.200 1.200 14 H -0.209 1.209 15 C 0.388 3.612 16 O -0.459 6.459 17 C -0.146 4.146 18 N -0.166 5.166 19 C -0.076 4.076 20 C -0.124 4.124 21 N -0.043 5.043 22 C 0.001 3.999 23 C -0.139 4.139 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.111 4.111 27 C -0.141 4.141 28 N -0.122 5.122 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.110 0.890 33 H 0.055 0.945 34 H 0.108 0.892 35 H 0.117 0.883 36 H 0.037 0.963 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.123 0.877 40 H 0.110 0.890 41 H 0.130 0.870 42 H 0.133 0.867 43 H 0.177 0.823 44 H 0.187 0.813 45 H 0.189 0.811 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.022 5.587 -15.989 17.058 hybrid contribution 0.629 -0.139 0.694 0.947 sum -1.394 5.449 -15.295 16.296 Atomic orbital electron populations 1.22876 0.79925 1.03393 1.00613 1.88017 1.21244 1.28149 1.95482 1.22933 0.93115 0.84917 1.01153 1.21695 0.93357 0.99872 0.86018 1.48048 1.61665 1.10001 1.10054 1.19514 0.95626 0.72434 0.99063 1.21279 0.94258 0.91998 1.48065 0.95180 1.25285 0.99918 0.96074 0.95038 1.70023 1.34381 1.00635 1.49944 0.85914 0.81780 0.77278 0.78291 1.20386 1.20017 1.20861 1.16529 0.77508 0.85112 0.82049 1.90651 1.56635 1.13841 1.84742 1.23681 1.07874 0.88629 0.94439 1.72084 1.16998 1.15022 1.12454 1.26135 1.00864 0.90992 0.89617 1.20604 1.04625 0.87164 0.99972 1.44830 1.46844 1.04757 1.07841 1.18136 1.01558 1.01876 0.78355 1.21160 0.99699 0.96566 0.96481 1.21423 0.98243 1.00383 0.91882 1.21818 0.94184 0.93892 1.01894 1.21494 0.99642 0.97708 0.92238 1.21410 0.95759 1.00450 0.96530 1.74232 1.19730 1.19985 0.98276 0.89230 0.92011 0.94296 0.89024 0.94461 0.89156 0.88325 0.96282 0.92183 0.92881 0.87695 0.88991 0.86953 0.86721 0.82349 0.81296 0.81081 0.83795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.02 16 2 O -0.41 -15.51 9.65 -148.98 -1.44 -16.94 16 3 C 0.06 1.94 6.28 71.98 0.45 2.39 16 4 C 0.11 4.55 5.82 86.38 0.50 5.05 16 5 N -0.57 -27.98 2.44 -829.58 -2.02 -30.00 16 6 C 0.25 13.85 4.53 85.63 0.39 14.24 16 7 C -0.52 -29.74 8.43 25.60 0.22 -29.52 16 8 H 0.03 1.80 7.81 -2.91 -0.02 1.78 16 9 C 0.04 2.06 5.46 84.65 0.46 2.52 16 10 N -0.91 -52.40 13.29 21.45 0.28 -52.11 16 11 Si 0.94 44.57 29.54 68.60 2.03 46.60 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 13 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 14 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 15 C 0.60 30.97 7.62 86.78 0.66 31.63 16 16 O -0.58 -30.30 16.64 -3.90 -0.06 -30.36 16 17 C 0.13 6.64 7.64 137.09 1.05 7.69 16 18 N -0.44 -21.55 7.18 -180.72 -1.30 -22.85 16 19 C 0.20 7.71 7.79 138.07 1.08 8.79 16 20 C -0.07 -1.78 8.66 71.23 0.62 -1.17 16 21 N -0.25 -9.53 3.47 -179.21 -0.62 -10.15 16 22 C 0.09 2.53 6.23 38.11 0.24 2.77 16 23 C -0.12 -2.94 9.71 22.39 0.22 -2.73 16 24 C -0.10 -1.56 10.04 22.25 0.22 -1.34 16 25 C -0.10 -1.09 10.04 22.29 0.22 -0.86 16 26 C -0.09 -1.14 10.04 22.25 0.22 -0.92 16 27 C -0.12 -2.42 8.25 22.39 0.18 -2.24 16 28 N -0.28 -12.97 11.77 -52.42 -0.62 -13.58 16 29 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.09 3.60 8.07 -2.39 -0.02 3.58 16 35 H 0.10 3.75 7.37 -2.39 -0.02 3.73 16 36 H 0.02 1.12 7.25 -2.39 -0.02 1.10 16 37 H 0.06 3.51 5.28 -2.39 -0.01 3.50 16 38 H 0.26 14.25 8.31 -92.72 -0.77 13.48 16 39 H 0.10 2.49 7.72 -2.39 -0.02 2.47 16 40 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 41 H 0.11 2.20 6.85 -2.39 -0.02 2.18 16 42 H 0.11 3.22 8.03 -2.91 -0.02 3.20 16 43 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 44 H 0.17 0.59 8.06 -2.91 -0.02 0.56 16 45 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16 46 H 0.14 2.62 6.05 -2.91 -0.02 2.60 16 Total: -1.00 -81.31 388.60 5.23 -76.08 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 1.00 Total: 15.00 kcal Atomic # 6 Polarization: 30.34 SS G_CDS: 7.98 Total: 38.32 kcal Atomic # 7 Polarization: -124.42 SS G_CDS: -4.27 Total: -128.69 kcal Atomic # 8 Polarization: -45.80 SS G_CDS: -1.50 Total: -47.31 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -81.31 5.23 -76.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731687255.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.042 kcal (2) G-P(sol) polarization free energy of solvation -81.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds