Wall clock time and date at job start Wed Apr 1 2020 03:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.47104 * 2 1 4 4 C 1.35321 * 126.12602 * 85.00369 * 3 2 1 5 5 C 1.39869 * 107.91863 * 179.97438 * 4 3 2 6 6 C 1.50697 * 125.89845 * 179.97438 * 5 4 3 7 7 N 1.46503 * 109.47498 * 95.00075 * 6 5 4 8 8 C 1.34770 * 120.00141 * 180.02562 * 7 6 5 9 9 O 1.21586 * 120.00372 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99930 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00133 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.46895 * 179.97438 * 11 10 8 13 13 C 1.38300 * 119.93324 * 269.72442 * 12 11 10 14 14 C 1.38095 * 120.06678 * 179.72758 * 13 12 11 15 15 C 1.38880 * 119.93149 * 0.57180 * 14 13 12 16 16 O 1.35754 * 120.06897 * 179.67925 * 15 14 13 17 17 C 1.34824 * 116.99950 * 174.48809 * 16 15 14 18 18 H 1.08000 * 120.00203 * 5.05680 * 17 16 15 19 19 C 1.38662 * 120.00010 * 185.05963 * 17 16 15 20 20 N 1.31553 * 119.99805 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99878 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47112 * 89.99890 * 21 19 17 23 23 H 1.48496 * 109.46914 * 210.00015 * 21 19 17 24 24 H 1.48502 * 109.47055 * 330.00078 * 21 19 17 25 25 C 1.38871 * 119.86135 * 359.70614 * 15 14 13 26 26 C 1.38096 * 119.93285 * 0.02562 * 25 15 14 27 27 N 1.30838 * 108.20613 * 0.02562 * 5 4 3 28 28 N 1.34950 * 126.12874 * 264.69220 * 3 2 1 29 29 H 0.96999 * 126.03447 * 0.02859 * 28 3 2 30 30 H 1.09000 * 109.47161 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47123 * 299.99692 * 1 2 3 32 32 H 1.08996 * 109.47446 * 59.99352 * 1 2 3 33 33 H 1.08996 * 109.47181 * 120.00166 * 2 1 3 34 34 H 1.09002 * 109.46671 * 240.00024 * 2 1 3 35 35 H 1.07998 * 126.03934 * 359.94214 * 4 3 2 36 36 H 1.09007 * 109.47174 * 214.99951 * 6 5 4 37 37 H 1.09000 * 109.47128 * 334.99538 * 6 5 4 38 38 H 0.96997 * 119.99402 * 359.97438 * 7 6 5 39 39 H 0.96995 * 119.99863 * 0.02562 * 10 8 7 40 40 H 1.08995 * 109.47408 * 300.00148 * 11 10 8 41 41 H 1.09002 * 109.46903 * 60.00621 * 11 10 8 42 42 H 1.08000 * 119.96519 * 359.97438 * 13 12 11 43 43 H 1.08008 * 120.03418 * 180.27662 * 14 13 12 44 44 H 0.96999 * 119.99760 * 180.02562 * 20 19 17 45 45 H 1.08002 * 120.03760 * 179.97438 * 25 15 14 46 46 H 1.08001 * 119.96524 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2085 2.2047 1.0889 5 6 2.6878 3.4444 0.6535 6 6 3.0219 4.6212 1.5337 7 7 4.4540 4.6091 1.8426 8 6 4.9836 5.5734 2.6211 9 8 4.2730 6.4536 3.0667 10 7 6.3009 5.5619 2.9056 11 6 6.8768 6.6104 3.7514 12 6 8.3553 6.3685 3.9147 13 6 8.8163 5.5965 4.9655 14 6 10.1701 5.3684 5.1145 15 6 11.0698 5.9249 4.2147 16 8 12.4017 5.7078 4.3623 17 6 13.2101 6.1802 3.3921 18 1 12.7997 6.7742 2.5889 19 6 14.5683 5.9032 3.4255 20 7 15.0681 5.1792 4.4036 21 14 15.6884 6.5582 2.0817 22 1 16.2038 7.8944 2.4745 23 1 16.8275 5.6254 1.8885 24 1 14.9241 6.6756 0.8139 25 6 10.6041 6.7043 3.1639 26 6 9.2487 6.9242 3.0171 27 7 2.7951 3.4065 -0.6499 28 7 2.3926 2.1373 -1.0853 29 1 2.3737 1.8288 -2.0048 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 2.0130 1.9229 2.1130 36 1 2.7700 5.5461 1.0148 37 1 2.4500 4.5565 2.4593 38 1 5.0207 3.9067 1.4873 39 1 6.8678 4.8599 2.5498 40 1 6.7166 7.5824 3.2850 41 1 6.3960 6.5930 4.7295 42 1 8.1166 5.1684 5.6680 43 1 10.5293 4.7618 5.9328 44 1 16.0183 4.9857 4.4272 45 1 11.3012 7.1388 2.4627 46 1 8.8859 7.5299 2.1998 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736662622.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:18 Heat of formation + Delta-G solvation = 32.206059 kcal Electronic energy + Delta-G solvation = -27509.434990 eV Core-core repulsion = 23401.181816 eV Total energy + Delta-G solvation = -4108.253174 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.75934 -39.88857 -39.04975 -36.91875 -35.47521 -34.35533 -34.23138 -32.37529 -31.81948 -30.26333 -29.83107 -29.48935 -27.10327 -25.67704 -24.43076 -24.31963 -22.03100 -20.94062 -20.84034 -20.62885 -20.45227 -18.37702 -18.04410 -17.84325 -17.03631 -16.42409 -15.62647 -15.34180 -14.96345 -14.81067 -14.74197 -14.58560 -14.37181 -14.33058 -13.89520 -13.82795 -13.68061 -13.44432 -13.25415 -12.96362 -12.83964 -12.76497 -12.60958 -12.10477 -11.98192 -11.71273 -11.66126 -11.37677 -11.00300 -10.95096 -10.76849 -10.66191 -10.48362 -10.29346 -9.81263 -9.41217 -9.28028 -9.05795 -8.90279 -8.71400 -8.26182 -7.31324 -6.52066 -4.10859 1.35885 1.98007 2.15275 2.21450 2.37702 3.06106 3.09962 3.13751 3.15465 3.29578 3.91259 3.99467 4.20250 4.34119 4.36772 4.61132 4.65258 4.76023 5.01559 5.03173 5.13807 5.18216 5.25091 5.28119 5.29563 5.40406 5.47522 5.48387 5.58475 5.69901 5.76379 5.85432 5.97324 6.14276 6.15031 6.34085 6.37799 6.60989 6.65241 6.81558 6.82553 6.92100 7.01791 7.17925 7.22968 7.30339 7.36918 7.73645 7.92796 8.08218 8.66534 8.93399 9.61881 10.65491 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014220 B = 0.001636 C = 0.001555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.607863 B =17105.893823 C =18003.828214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.063 4.063 3 C 0.089 3.911 4 C -0.253 4.253 5 C 0.061 3.939 6 C 0.223 3.777 7 N -0.744 5.744 8 C 0.704 3.296 9 O -0.597 6.597 10 N -0.737 5.737 11 C 0.198 3.802 12 C -0.214 4.214 13 C -0.053 4.053 14 C -0.196 4.196 15 C 0.160 3.840 16 O -0.174 6.174 17 C -0.393 4.393 18 H 0.093 0.907 19 C 0.040 3.960 20 N -0.860 5.860 21 Si 0.942 3.058 22 H -0.272 1.272 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.237 4.237 26 C -0.050 4.050 27 N -0.273 5.273 28 N -0.470 5.470 29 H 0.438 0.562 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.150 0.850 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.398 0.602 39 H 0.397 0.603 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.113 0.887 43 H 0.118 0.882 44 H 0.271 0.729 45 H 0.128 0.872 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.655 -9.933 -9.110 28.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 C -0.040 4.040 4 C -0.283 4.283 5 C -0.106 4.106 6 C 0.097 3.903 7 N -0.401 5.401 8 C 0.404 3.596 9 O -0.475 6.475 10 N -0.392 5.392 11 C 0.075 3.925 12 C -0.215 4.215 13 C -0.072 4.072 14 C -0.215 4.215 15 C 0.106 3.894 16 O -0.077 6.077 17 C -0.469 4.469 18 H 0.111 0.889 19 C -0.164 4.164 20 N -0.494 5.494 21 Si 0.766 3.234 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.192 1.192 25 C -0.257 4.257 26 C -0.069 4.069 27 N -0.097 5.097 28 N -0.179 5.179 29 H 0.282 0.718 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.168 0.832 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.231 0.769 39 H 0.231 0.769 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.131 0.869 43 H 0.136 0.864 44 H 0.081 0.919 45 H 0.145 0.855 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -25.608 -8.631 -9.451 28.629 hybrid contribution 0.945 -0.986 -0.917 1.645 sum -24.663 -9.617 -10.368 28.430 Atomic orbital electron populations 1.21760 0.93720 1.02432 1.02707 1.20256 0.96704 0.89100 1.04204 1.21158 0.99456 0.95606 0.87757 1.21184 1.13679 0.93869 0.99566 1.22257 1.00347 0.96324 0.91644 1.19279 0.81100 0.93470 0.96425 1.45021 1.09311 1.30457 1.55349 1.15935 0.82475 0.81946 0.79247 1.90913 1.60257 1.38419 1.57939 1.45490 1.06738 1.31787 1.55180 1.19833 0.89365 0.89482 0.93791 1.19240 0.93397 1.08250 1.00625 1.20542 0.94225 0.96163 0.96304 1.20218 0.91889 1.06923 1.02482 1.19443 0.85313 0.91953 0.92731 1.83977 1.11188 1.68231 1.44279 1.21356 0.88528 1.32910 1.04149 0.88929 1.25312 0.96481 0.96430 0.98226 1.70036 1.13915 1.34979 1.30466 0.85699 0.79298 0.78667 0.79713 1.19788 1.20207 1.19156 1.21158 0.95720 1.06414 1.02367 1.20658 0.92561 0.96863 0.96797 1.77386 1.21344 0.98360 1.12624 1.46358 1.52646 1.10085 1.08846 0.71794 0.91600 0.91770 0.92667 0.88833 0.90562 0.83215 0.90146 0.89486 0.76888 0.76877 0.91737 0.91662 0.86900 0.86398 0.91908 0.85454 0.87360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.46 9.89 37.16 0.37 -0.09 16 2 C -0.06 -0.22 6.48 -27.88 -0.18 -0.40 16 3 C 0.09 0.57 6.46 -82.26 -0.53 0.04 16 4 C -0.25 -1.98 10.65 -40.01 -0.43 -2.41 16 5 C 0.06 0.58 6.59 -82.41 -0.54 0.04 16 6 C 0.22 2.25 6.23 -5.19 -0.03 2.22 16 7 N -0.74 -8.03 5.55 -66.41 -0.37 -8.40 16 8 C 0.70 9.78 8.57 -86.92 -0.74 9.03 16 9 O -0.60 -10.44 16.34 5.29 0.09 -10.36 16 10 N -0.74 -9.57 5.55 -66.41 -0.37 -9.94 16 11 C 0.20 2.84 5.80 -5.19 -0.03 2.81 16 12 C -0.21 -3.46 5.25 -104.57 -0.55 -4.01 16 13 C -0.05 -0.90 9.69 -39.61 -0.38 -1.29 16 14 C -0.20 -3.95 9.99 -39.40 -0.39 -4.35 16 15 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 16 O -0.17 -4.85 9.76 0.05 0.00 -4.85 16 17 C -0.39 -10.74 9.49 30.89 0.29 -10.44 16 18 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 19 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 20 N -0.86 -24.72 13.67 55.48 0.76 -23.96 16 21 Si 0.94 20.11 29.55 -169.99 -5.02 15.09 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 23 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 25 C -0.24 -4.95 9.17 -39.40 -0.36 -5.31 16 26 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 27 N -0.27 -2.80 12.70 33.67 0.43 -2.37 16 28 N -0.47 -3.37 7.36 33.48 0.25 -3.12 16 29 H 0.44 1.89 8.96 -182.61 -1.64 0.25 16 30 H 0.06 0.14 8.14 -51.93 -0.42 -0.29 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.40 3.67 8.48 -40.82 -0.35 3.33 16 39 H 0.40 4.60 8.48 -40.82 -0.35 4.25 16 40 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 41 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 42 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 43 H 0.12 2.31 8.06 -52.48 -0.42 1.88 16 44 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.13 2.68 5.64 -52.49 -0.30 2.38 16 46 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 398.36 15.07 6.00 6.00 Total: -1.00 -33.87 398.36 -10.02 -43.89 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -7.52 Total: 8.97 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -4.26 Total: -10.94 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: 0.69 Total: -47.80 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: 0.09 Total: -15.20 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.87 -10.02 -43.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736662622.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.092 kcal (2) G-P(sol) polarization free energy of solvation -33.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds