Wall clock time and date at job start Wed Apr 1 2020 02:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40002 * 126.01827 * 2 1 4 4 N 1.30814 * 108.38185 * 179.97438 * 3 2 1 5 5 N 1.40093 * 108.26186 * 359.97438 * 4 3 2 6 6 C 1.39010 * 126.10895 * 179.97438 * 5 4 3 7 7 C 1.39085 * 126.41389 * 335.02698 * 6 5 4 8 8 C 1.46894 * 126.49354 * 359.96442 * 7 6 5 9 9 O 1.21570 * 120.00252 * 90.00111 * 8 7 6 10 10 O 1.34812 * 119.99886 * 269.99891 * 8 7 6 11 11 C 1.45193 * 117.00220 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47629 * 179.97438 * 11 10 8 13 13 C 1.50698 * 115.55091 * 294.88972 * 12 11 10 14 14 H 1.07995 * 120.00548 * 95.15680 * 13 12 11 15 15 C 1.37887 * 119.99607 * 274.88498 * 13 12 11 16 16 N 1.31512 * 119.99742 * 6.38500 * 15 13 12 17 17 Si 1.86792 * 120.00001 * 186.38825 * 15 13 12 18 18 H 1.48497 * 109.47138 * 89.99854 * 17 15 13 19 19 H 1.48507 * 109.46983 * 210.00016 * 17 15 13 20 20 H 1.48507 * 109.47143 * 329.99898 * 17 15 13 21 21 C 1.53001 * 117.49567 * 80.55078 * 12 11 10 22 22 C 1.52997 * 117.50058 * 149.21087 * 12 11 10 23 23 C 1.41396 * 107.00803 * 180.22370 * 7 6 5 24 24 C 1.50698 * 125.92072 * 179.69896 * 23 7 6 25 25 N 1.30357 * 108.16114 * 359.55391 * 23 7 6 26 26 N 1.34717 * 126.41715 * 154.97950 * 6 5 4 27 27 C 1.46507 * 125.75013 * 0.06363 * 26 6 5 28 28 C 1.35261 * 126.01068 * 180.27635 * 2 1 3 29 29 H 1.08998 * 109.47108 * 89.97808 * 1 2 3 30 30 H 1.08996 * 109.47460 * 209.98348 * 1 2 3 31 31 H 1.08999 * 109.46813 * 329.98032 * 1 2 3 32 32 H 1.07999 * 125.80329 * 359.97438 * 3 2 1 33 33 H 1.09004 * 109.47351 * 59.99218 * 11 10 8 34 34 H 1.09010 * 109.46838 * 300.00152 * 11 10 8 35 35 H 0.97004 * 120.00151 * 179.97438 * 16 15 13 36 36 H 1.09003 * 117.50064 * 215.00337 * 21 12 11 37 37 H 1.08997 * 117.50444 * 0.02833 * 21 12 11 38 38 H 1.08997 * 117.50286 * 359.97438 * 22 12 11 39 39 H 1.09000 * 117.49777 * 144.98214 * 22 12 11 40 40 H 1.09003 * 109.47444 * 89.99705 * 24 23 7 41 41 H 1.08992 * 109.47441 * 210.00449 * 24 23 7 42 42 H 1.09005 * 109.46959 * 330.00523 * 24 23 7 43 43 H 1.08994 * 109.47361 * 89.99241 * 27 26 6 44 44 H 1.08999 * 109.47020 * 209.99880 * 27 26 6 45 45 H 1.09004 * 109.46758 * 329.99531 * 27 26 6 46 46 H 1.07996 * 126.19929 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3303 1.1324 0.0000 4 7 3.5769 0.7360 0.0006 5 7 3.5922 -0.6648 0.0015 6 6 4.7242 -1.4717 0.0018 7 6 5.9853 -1.1251 -0.4712 8 6 6.3723 0.1613 -1.0657 9 8 6.7904 1.0568 -0.3578 10 8 6.2637 0.3488 -2.3963 11 6 6.6648 1.6445 -2.9143 12 6 6.4729 1.6687 -4.4320 13 6 7.3491 0.7235 -5.2130 14 1 6.9772 -0.2510 -5.4929 15 6 8.6236 1.1052 -5.5753 16 7 9.1205 2.2401 -5.1340 17 14 9.6442 0.0105 -6.6929 18 1 9.3980 0.3823 -8.1093 19 1 11.0847 0.1872 -6.3779 20 1 9.2614 -1.4085 -6.4799 21 6 5.0601 1.9229 -4.9614 22 6 6.1295 3.0118 -5.0793 23 6 6.8228 -2.2477 -0.2771 24 6 8.2810 -2.3373 -0.6468 25 7 6.1158 -3.1906 0.2800 26 7 4.8053 -2.7355 0.4612 27 6 3.7061 -3.5042 1.0507 28 6 2.3023 -1.0941 -0.0053 29 1 -0.3633 0.0004 -1.0276 30 1 -0.3634 -0.8901 0.5135 31 1 -0.3633 0.8898 0.5141 32 1 1.9933 2.1585 -0.0004 33 1 7.7142 1.8212 -2.6782 34 1 6.0536 2.4232 -2.4579 35 1 10.0173 2.5085 -5.3885 36 1 4.7644 1.4066 -5.8747 37 1 4.2675 2.0733 -4.2286 38 1 6.0398 3.8781 -4.4240 39 1 6.5376 3.2119 -6.0700 40 1 8.8902 -2.0059 0.1941 41 1 8.5308 -3.3695 -0.8920 42 1 8.4767 -1.7012 -1.5101 43 1 3.1821 -4.0494 0.2657 44 1 4.1060 -4.2102 1.7786 45 1 3.0126 -2.8249 1.5464 46 1 1.9723 -2.1224 -0.0106 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778654228.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:18 Heat of formation + Delta-G solvation = 85.847264 kcal Electronic energy + Delta-G solvation = -30638.645179 eV Core-core repulsion = 26532.718062 eV Total energy + Delta-G solvation = -4105.927117 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.27705 -42.03525 -40.98587 -38.56029 -36.87415 -35.85094 -34.53468 -34.03136 -32.71641 -31.34509 -30.52609 -28.87149 -27.73504 -27.26668 -26.88798 -24.43986 -23.44171 -22.97826 -21.87085 -21.25471 -21.19611 -20.62650 -19.12878 -18.55899 -18.22628 -17.56162 -17.21538 -17.09906 -16.64132 -16.26561 -15.97101 -15.89647 -15.49487 -14.95257 -14.60122 -14.56805 -14.44844 -14.14463 -14.01930 -13.82048 -13.77211 -13.60799 -13.53206 -13.36614 -13.17149 -12.95245 -12.80340 -12.79516 -12.41633 -12.28581 -12.13903 -11.78856 -11.78374 -11.68063 -11.53718 -11.42071 -10.80802 -10.50922 -10.41074 -10.12800 -10.02521 -9.35180 -8.13390 -6.25248 -0.29331 0.36690 0.87548 1.05592 1.15688 1.42214 1.42949 1.46906 1.53702 1.61758 1.99992 2.43004 3.06134 3.15008 3.16109 3.41965 3.61132 3.81352 3.90138 3.98512 4.09031 4.11850 4.21381 4.24170 4.32349 4.36639 4.43460 4.47922 4.58451 4.61270 4.62902 4.67335 4.74895 4.83602 4.90805 5.00147 5.02992 5.13302 5.15010 5.21918 5.27017 5.39885 5.52414 5.56557 5.62612 5.74058 5.93267 6.11588 6.34587 6.41712 6.78583 6.79966 7.43237 8.95808 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011106 B = 0.003877 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.495937 B = 7220.918319 C = 8777.886411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.205 4.205 3 C 0.065 3.935 4 N -0.317 5.317 5 N -0.335 5.335 6 C 0.371 3.629 7 C -0.289 4.289 8 C 0.554 3.446 9 O -0.534 6.534 10 O -0.343 6.343 11 C 0.133 3.867 12 C 0.006 3.994 13 C -0.504 4.504 14 H 0.051 0.949 15 C 0.026 3.974 16 N -0.908 5.908 17 Si 0.953 3.047 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.269 1.269 21 C -0.179 4.179 22 C -0.140 4.140 23 C 0.130 3.870 24 C -0.082 4.082 25 N -0.272 5.272 26 N -0.353 5.353 27 C 0.073 3.927 28 C 0.037 3.963 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.220 0.780 33 H 0.042 0.958 34 H 0.039 0.961 35 H 0.262 0.738 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.110 0.890 42 H 0.065 0.935 43 H 0.114 0.886 44 H 0.122 0.878 45 H 0.106 0.894 46 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.149 -11.530 13.263 25.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.216 4.216 3 C -0.124 4.124 4 N -0.135 5.135 5 N -0.115 5.115 6 C 0.146 3.854 7 C -0.304 4.304 8 C 0.397 3.603 9 O -0.424 6.424 10 O -0.258 6.258 11 C 0.059 3.941 12 C 0.005 3.995 13 C -0.542 4.542 14 H 0.069 0.931 15 C -0.175 4.175 16 N -0.545 5.545 17 Si 0.778 3.222 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.193 1.193 21 C -0.217 4.217 22 C -0.178 4.178 23 C -0.036 4.036 24 C -0.140 4.140 25 N -0.095 5.095 26 N -0.136 5.136 27 C -0.065 4.065 28 C -0.100 4.100 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.236 0.764 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.118 0.882 41 H 0.129 0.871 42 H 0.084 0.916 43 H 0.132 0.868 44 H 0.140 0.860 45 H 0.125 0.875 46 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -16.702 -12.130 13.961 24.920 hybrid contribution 0.274 0.851 -0.842 1.228 sum -16.428 -11.278 13.119 23.858 Atomic orbital electron populations 1.20237 0.85194 1.04323 1.03085 1.20758 0.99277 0.90106 1.11416 1.24874 0.88928 1.02446 0.96195 1.77873 1.23765 0.86791 1.25051 1.44914 1.02979 1.04517 1.59087 1.17074 0.85780 0.85075 0.97426 1.18837 0.95170 0.96938 1.19488 1.20125 0.73106 0.86385 0.80669 1.90749 1.43781 1.44739 1.63106 1.86674 1.76870 1.39152 1.23106 1.22508 0.97524 0.79396 0.94626 1.18877 0.94637 0.97641 0.88309 1.20550 0.98590 1.00591 1.34474 0.93065 1.25714 0.98356 0.96468 0.96926 1.70110 1.16661 1.23330 1.44414 0.85634 0.77744 0.79458 0.79345 1.19734 1.20786 1.19308 1.22959 0.92224 1.03955 1.02516 1.22467 1.02369 0.91787 1.01137 1.22490 0.98129 0.87942 0.95055 1.20446 0.85415 1.05476 1.02680 1.77164 0.86921 1.20795 1.24599 1.48677 1.10199 1.07703 1.47045 1.22779 0.85458 0.97252 1.00999 1.23475 0.81134 1.02823 1.02610 0.90837 0.89588 0.90092 0.76402 0.93973 0.94234 0.92872 0.89502 0.89975 0.90513 0.90712 0.88220 0.87136 0.91635 0.86805 0.85996 0.87548 0.76437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.37 71.24 0.74 0.14 16 2 C -0.21 -3.56 6.10 -20.12 -0.12 -3.68 16 3 C 0.06 1.54 11.95 85.27 1.02 2.56 16 4 N -0.32 -10.83 11.64 -56.95 -0.66 -11.49 16 5 N -0.33 -9.93 3.78 -191.01 -0.72 -10.65 16 6 C 0.37 12.07 7.65 132.34 1.01 13.09 16 7 C -0.29 -11.49 6.02 -20.03 -0.12 -11.61 16 8 C 0.55 26.43 6.61 70.09 0.46 26.90 16 9 O -0.53 -27.90 16.90 19.61 0.33 -27.57 16 10 O -0.34 -17.67 10.17 -57.24 -0.58 -18.25 16 11 C 0.13 7.10 5.30 71.98 0.38 7.48 16 12 C 0.01 0.31 1.61 -52.93 -0.08 0.22 16 13 C -0.50 -28.81 8.77 25.60 0.22 -28.59 16 14 H 0.05 2.95 7.82 -2.91 -0.02 2.93 16 15 C 0.03 1.46 5.39 84.66 0.46 1.91 16 16 N -0.91 -53.06 12.93 21.45 0.28 -52.78 16 17 Si 0.95 44.14 29.54 68.60 2.03 46.16 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 21 C -0.18 -8.14 9.96 30.62 0.30 -7.84 16 22 C -0.14 -6.78 9.43 30.62 0.29 -6.49 16 23 C 0.13 4.41 7.26 43.55 0.32 4.72 16 24 C -0.08 -2.39 10.28 71.24 0.73 -1.65 16 25 N -0.27 -7.93 12.48 -46.65 -0.58 -8.51 16 26 N -0.35 -8.79 3.99 -364.71 -1.46 -10.25 16 27 C 0.07 0.79 9.95 127.77 1.27 2.06 16 28 C 0.04 0.70 9.72 83.37 0.81 1.51 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.22 3.69 8.06 -2.91 -0.02 3.66 16 33 H 0.04 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.04 2.03 8.09 -2.38 -0.02 2.01 16 35 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 36 H 0.09 3.79 8.14 -2.39 -0.02 3.77 16 37 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 38 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16 39 H 0.07 3.77 8.14 -2.39 -0.02 3.76 16 40 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 42 H 0.06 2.23 8.00 -2.38 -0.02 2.21 16 43 H 0.11 0.64 8.08 -2.39 -0.02 0.62 16 44 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.11 0.79 6.43 -2.39 -0.02 0.78 16 46 H 0.22 1.94 6.44 -2.91 -0.02 1.93 16 Total: -1.00 -82.70 399.90 7.32 -75.38 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 1.00 Total: 17.25 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 7.69 Total: 0.72 kcal Atomic # 7 Polarization: -90.54 SS G_CDS: -3.15 Total: -93.69 kcal Atomic # 8 Polarization: -45.57 SS G_CDS: -0.25 Total: -45.82 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -82.70 7.32 -75.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778654228.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.231 kcal (2) G-P(sol) polarization free energy of solvation -82.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds