Wall clock time and date at job start Wed Apr 1 2020 02:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30180 * 125.08859 * 2 1 4 4 C 1.34888 * 109.73319 * 180.11485 * 3 2 1 5 5 C 1.46283 * 126.49591 * 179.88081 * 4 3 2 6 6 O 1.21774 * 119.99913 * 179.68862 * 5 4 3 7 7 N 1.34781 * 120.00118 * 359.68077 * 5 4 3 8 8 C 1.46500 * 119.99697 * 179.97438 * 7 5 4 9 9 C 1.53006 * 109.46719 * 180.02562 * 8 7 5 10 10 H 1.08995 * 110.64028 * 303.31454 * 9 8 7 11 11 C 1.54324 * 110.71890 * 66.45585 * 9 8 7 12 12 N 1.47020 * 107.39983 * 140.47837 * 11 9 8 13 13 C 1.36946 * 125.64749 * 181.10549 * 12 11 9 14 14 H 1.08000 * 119.99920 * 359.97438 * 13 12 11 15 15 C 1.38814 * 119.99867 * 180.02562 * 13 12 11 16 16 N 1.31617 * 119.99930 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99829 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47087 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47426 * 119.99468 * 17 15 13 20 20 H 1.48497 * 109.47269 * 239.99725 * 17 15 13 21 21 C 1.47743 * 108.53125 * 1.18235 * 12 11 9 22 22 C 1.54909 * 104.83995 * 335.74644 * 21 12 11 23 23 H 1.09001 * 111.03628 * 155.18095 * 22 21 12 24 24 O 1.42891 * 111.00999 * 279.02161 * 22 21 12 25 25 C 1.40144 * 107.00675 * 359.61690 * 4 3 2 26 26 C 1.40177 * 133.57959 * 180.20774 * 25 4 3 27 27 C 1.36339 * 119.19861 * 180.02562 * 26 25 4 28 28 C 1.40391 * 119.56149 * 359.97389 * 27 26 25 29 29 C 1.35031 * 120.43628 * 0.04700 * 28 27 26 30 30 N 1.36244 * 125.08681 * 179.67922 * 2 1 3 31 31 H 1.08992 * 109.47330 * 270.31717 * 1 2 3 32 32 H 1.09007 * 109.47090 * 30.32490 * 1 2 3 33 33 H 1.09001 * 109.46686 * 150.31585 * 1 2 3 34 34 H 0.97000 * 119.99671 * 0.02562 * 7 5 4 35 35 H 1.08996 * 109.47222 * 60.01303 * 8 7 5 36 36 H 1.08997 * 109.47438 * 300.00126 * 8 7 5 37 37 H 1.09002 * 109.88322 * 259.97367 * 11 9 8 38 38 H 1.09000 * 109.88025 * 20.98532 * 11 9 8 39 39 H 0.96998 * 119.99524 * 180.02562 * 16 15 13 40 40 H 1.09003 * 110.29227 * 216.94505 * 21 12 11 41 41 H 1.08996 * 110.53057 * 94.67717 * 21 12 11 42 42 H 0.96705 * 114.00245 * 292.19608 * 24 22 21 43 43 H 1.07994 * 120.39696 * 0.02929 * 26 25 4 44 44 H 1.08002 * 120.21670 * 180.02562 * 27 26 25 45 45 H 1.07988 * 119.77953 * 180.02562 * 28 27 26 46 46 H 1.08006 * 119.69272 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2554 1.0652 0.0000 4 6 3.5561 0.7080 -0.0025 5 6 4.7065 1.6116 -0.0058 6 8 5.8367 1.1584 -0.0022 7 7 4.5154 2.9458 -0.0131 8 6 5.6676 3.8507 -0.0158 9 6 5.1776 5.3001 -0.0235 10 1 4.5251 5.4806 -0.8777 11 6 4.4547 5.6391 1.2972 12 7 4.8448 7.0056 1.6737 13 6 4.4345 7.6717 2.7978 14 1 3.7659 7.1908 3.4965 15 6 4.8770 8.9652 3.0384 16 7 5.6913 9.5513 2.1866 17 14 4.3167 9.8739 4.5713 18 1 3.4100 9.0017 5.3602 19 1 5.4996 10.2322 5.3945 20 1 3.5947 11.1104 4.1776 21 6 5.7510 7.5382 0.6355 22 6 6.3766 6.2849 -0.0259 23 1 6.7026 6.5009 -1.0433 24 8 7.4578 5.7774 0.7585 25 6 3.5965 -0.6928 0.0047 26 6 4.6394 -1.6294 0.0098 27 6 4.3390 -2.9593 0.0161 28 6 2.9953 -3.3658 0.0180 29 6 2.0034 -2.4496 0.0126 30 7 2.2902 -1.1148 0.0062 31 1 -0.3633 0.0057 1.0276 32 1 -0.3634 0.8871 -0.5189 33 1 -0.3633 -0.8928 -0.5089 34 1 3.6151 3.3068 -0.0157 35 1 6.2721 3.6666 -0.9039 36 1 6.2692 3.6756 0.8761 37 1 3.3755 5.5881 1.1527 38 1 4.7577 4.9391 2.0758 39 1 6.0008 10.4550 2.3550 40 1 6.5267 8.1541 1.0906 41 1 5.1917 8.1162 -0.1001 42 1 8.2301 6.3588 0.7867 43 1 5.6684 -1.3015 0.0088 44 1 5.1296 -3.6951 0.0205 45 1 2.7533 -4.4183 0.0234 46 1 0.9738 -2.7758 0.0137 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958264037.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:33 Heat of formation + Delta-G solvation = 31.197837 kcal Electronic energy + Delta-G solvation = -29519.851329 eV Core-core repulsion = 25411.554435 eV Total energy + Delta-G solvation = -4108.296894 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.14950 -39.33755 -38.10824 -37.74920 -34.75152 -34.38675 -33.86288 -32.08917 -31.88530 -30.51116 -29.57198 -27.82123 -27.07513 -25.44866 -24.25503 -24.04787 -22.71225 -21.47941 -20.61571 -19.96804 -19.48072 -18.02701 -17.28273 -17.17216 -16.63221 -16.50015 -16.12296 -15.86663 -15.41259 -14.88420 -14.84674 -14.72959 -14.09077 -14.02525 -13.72728 -13.53855 -13.50417 -13.09467 -12.95434 -12.61693 -12.56803 -12.25796 -12.03744 -11.98939 -11.82017 -11.28096 -11.17731 -10.93671 -10.76727 -10.73284 -10.55446 -10.27939 -10.16973 -9.94762 -9.77157 -9.69975 -9.69164 -9.03049 -8.74938 -8.62824 -7.73472 -6.77061 -5.63401 -3.02407 0.32290 0.75799 2.12329 2.16827 2.94213 3.41216 3.42650 3.48177 3.50670 3.63820 3.95732 4.04600 4.26301 4.41709 4.51830 4.55973 4.70049 4.82710 4.98741 5.02388 5.14659 5.25381 5.27888 5.42142 5.42596 5.49387 5.51671 5.59617 5.68976 5.70924 5.87886 6.01094 6.07356 6.18355 6.18675 6.21915 6.46156 6.54301 6.67738 6.74783 6.80210 6.97160 7.34857 7.38766 7.64353 7.80999 7.84909 8.30077 8.43109 8.46484 9.24519 9.86157 10.51189 11.42108 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016782 B = 0.002336 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.030082 B =11984.703577 C =12960.068918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.167 3.833 3 N -0.413 5.413 4 C -0.054 4.054 5 C 0.603 3.397 6 O -0.550 6.550 7 N -0.710 5.710 8 C 0.141 3.859 9 C -0.106 4.106 10 H 0.086 0.914 11 C 0.144 3.856 12 N -0.598 5.598 13 C -0.214 4.214 14 H 0.078 0.922 15 C -0.015 4.015 16 N -0.926 5.926 17 Si 0.915 3.085 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C 0.126 3.874 22 C 0.083 3.917 23 H 0.054 0.946 24 O -0.557 6.557 25 C 0.073 3.927 26 C -0.065 4.065 27 C -0.119 4.119 28 C -0.131 4.131 29 C 0.048 3.952 30 N -0.362 5.362 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.407 0.593 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.020 0.980 38 H 0.028 0.972 39 H 0.250 0.750 40 H 0.111 0.889 41 H 0.019 0.981 42 H 0.374 0.626 43 H 0.161 0.839 44 H 0.142 0.858 45 H 0.151 0.849 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.415 -25.806 -8.584 28.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.090 4.090 3 N -0.128 5.128 4 C -0.188 4.188 5 C 0.389 3.611 6 O -0.428 6.428 7 N -0.360 5.360 8 C 0.018 3.982 9 C -0.125 4.125 10 H 0.104 0.896 11 C 0.018 3.982 12 N -0.324 5.324 13 C -0.342 4.342 14 H 0.096 0.904 15 C -0.209 4.209 16 N -0.576 5.576 17 Si 0.746 3.254 18 H -0.206 1.206 19 H -0.218 1.218 20 H -0.218 1.218 21 C 0.001 3.999 22 C 0.022 3.978 23 H 0.072 0.928 24 O -0.362 6.362 25 C -0.040 4.040 26 C -0.084 4.084 27 C -0.140 4.140 28 C -0.152 4.152 29 C -0.074 4.074 30 N -0.034 5.034 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.242 0.758 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.038 0.962 38 H 0.046 0.954 39 H 0.061 0.939 40 H 0.129 0.871 41 H 0.037 0.963 42 H 0.221 0.779 43 H 0.178 0.822 44 H 0.160 0.840 45 H 0.168 0.832 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -7.450 -25.513 -8.371 27.866 hybrid contribution -0.243 0.332 0.660 0.777 sum -7.693 -25.182 -7.712 27.436 Atomic orbital electron populations 1.20202 0.83820 1.04294 1.03864 1.23355 0.95712 0.78817 1.11099 1.70043 1.01452 1.27456 1.13873 1.20564 0.91581 0.89673 1.17022 1.16441 0.86291 0.81781 0.76542 1.90796 1.23168 1.76894 1.51944 1.45869 1.11188 1.05265 1.73716 1.21253 0.87156 0.86935 1.02850 1.22500 0.97140 0.93119 0.99751 0.89614 1.21303 0.95559 0.88557 0.92744 1.44427 1.54110 1.10577 1.23260 1.19147 1.22362 0.95517 0.97190 0.90433 1.24756 1.00217 0.97035 0.98929 1.69759 1.37728 1.13875 1.36240 0.85980 0.77712 0.79520 0.82214 1.20557 1.21788 1.21848 1.22622 0.95296 0.91752 0.90249 1.23186 0.86521 0.95242 0.92851 0.92781 1.86399 1.26833 1.48983 1.73989 1.19277 0.84003 0.94320 1.06354 1.20854 0.99257 0.91191 0.97115 1.21229 0.96595 0.95932 1.00245 1.20913 0.92339 0.99960 1.01969 1.21652 1.01527 0.80299 1.03919 1.42859 1.07915 1.06492 1.46089 0.89914 0.88551 0.90841 0.75754 0.91760 0.90044 0.96207 0.95372 0.93875 0.87131 0.96289 0.77911 0.82187 0.84049 0.83158 0.81563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.41 10.32 36.01 0.37 -0.03 16 2 C 0.17 1.85 7.94 -154.57 -1.23 0.62 16 3 N -0.41 -5.87 10.90 -6.74 -0.07 -5.95 16 4 C -0.05 -0.83 7.05 -82.58 -0.58 -1.41 16 5 C 0.60 10.37 7.77 -13.03 -0.10 10.27 16 6 O -0.55 -10.50 15.75 5.12 0.08 -10.41 16 7 N -0.71 -11.68 5.40 -61.73 -0.33 -12.02 16 8 C 0.14 2.46 4.59 -4.04 -0.02 2.44 16 9 C -0.11 -1.94 2.95 -88.78 -0.26 -2.20 16 10 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 11 C 0.14 3.18 6.52 -3.06 -0.02 3.16 16 12 N -0.60 -15.74 3.41 -169.81 -0.58 -16.32 16 13 C -0.21 -6.13 10.28 -15.05 -0.15 -6.28 16 14 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 15 C -0.01 -0.42 5.49 -17.43 -0.10 -0.51 16 16 N -0.93 -27.14 10.11 55.49 0.56 -26.58 16 17 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 C 0.13 3.05 5.65 -2.35 -0.01 3.04 16 22 C 0.08 1.59 4.17 -24.58 -0.10 1.49 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 24 O -0.56 -10.72 12.22 -35.23 -0.43 -11.15 16 25 C 0.07 0.95 6.72 -83.98 -0.56 0.39 16 26 C -0.06 -0.70 9.73 -39.54 -0.38 -1.09 16 27 C -0.12 -0.87 10.08 -39.46 -0.40 -1.27 16 28 C -0.13 -0.73 9.98 -39.91 -0.40 -1.13 16 29 C 0.05 0.31 10.77 -16.60 -0.18 0.13 16 30 N -0.36 -3.79 2.94 -57.93 -0.17 -3.96 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.10 0.61 8.14 -51.92 -0.42 0.18 16 33 H 0.07 0.28 7.98 -51.93 -0.41 -0.14 16 34 H 0.41 6.34 8.03 -40.82 -0.33 6.01 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.62 7.44 -51.93 -0.39 1.24 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.03 0.66 7.76 -51.93 -0.40 0.25 16 39 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.11 2.97 5.89 -51.93 -0.31 2.67 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.37 5.88 9.12 45.56 0.42 6.30 16 43 H 0.16 1.84 7.17 -52.49 -0.38 1.46 16 44 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 45 H 0.15 0.32 8.06 -52.49 -0.42 -0.10 16 46 H 0.17 0.46 7.94 -52.48 -0.42 0.04 16 LS Contribution 382.15 15.07 5.76 5.76 Total: -1.00 -36.60 382.15 -9.90 -46.50 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -5.57 Total: 9.00 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: -4.13 Total: 7.61 kcal Atomic # 7 Polarization: -64.23 SS G_CDS: -0.59 Total: -64.83 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.35 Total: -21.57 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.60 -9.90 -46.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958264037.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.702 kcal (2) G-P(sol) polarization free energy of solvation -36.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds