Wall clock time and date at job start Wed Apr 1 2020 02:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30180 * 125.08859 * 2 1 4 4 C 1.34888 * 109.73319 * 180.11485 * 3 2 1 5 5 C 1.46283 * 126.49591 * 179.88081 * 4 3 2 6 6 O 1.21774 * 119.99913 * 179.68862 * 5 4 3 7 7 N 1.34781 * 120.00118 * 359.68077 * 5 4 3 8 8 C 1.46500 * 119.99697 * 179.97438 * 7 5 4 9 9 C 1.53006 * 109.46719 * 180.02562 * 8 7 5 10 10 H 1.08995 * 110.64028 * 303.31454 * 9 8 7 11 11 C 1.54324 * 110.71890 * 66.45585 * 9 8 7 12 12 N 1.47020 * 107.39983 * 140.47837 * 11 9 8 13 13 C 1.36946 * 125.64749 * 181.10549 * 12 11 9 14 14 H 1.08000 * 119.99920 * 359.97438 * 13 12 11 15 15 C 1.38814 * 119.99867 * 180.02562 * 13 12 11 16 16 N 1.31617 * 119.99930 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99829 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47087 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47426 * 119.99468 * 17 15 13 20 20 H 1.48497 * 109.47269 * 239.99725 * 17 15 13 21 21 C 1.47743 * 108.53125 * 1.18235 * 12 11 9 22 22 C 1.54909 * 104.83995 * 335.74644 * 21 12 11 23 23 H 1.09001 * 111.03628 * 155.18095 * 22 21 12 24 24 O 1.42891 * 111.00999 * 279.02161 * 22 21 12 25 25 C 1.40144 * 107.00675 * 359.61690 * 4 3 2 26 26 C 1.40177 * 133.57959 * 180.20774 * 25 4 3 27 27 C 1.36339 * 119.19861 * 180.02562 * 26 25 4 28 28 C 1.40391 * 119.56149 * 359.97389 * 27 26 25 29 29 C 1.35031 * 120.43628 * 0.04700 * 28 27 26 30 30 N 1.36244 * 125.08681 * 179.67922 * 2 1 3 31 31 H 1.08992 * 109.47330 * 270.31717 * 1 2 3 32 32 H 1.09007 * 109.47090 * 30.32490 * 1 2 3 33 33 H 1.09001 * 109.46686 * 150.31585 * 1 2 3 34 34 H 0.97000 * 119.99671 * 0.02562 * 7 5 4 35 35 H 1.08996 * 109.47222 * 60.01303 * 8 7 5 36 36 H 1.08997 * 109.47438 * 300.00126 * 8 7 5 37 37 H 1.09002 * 109.88322 * 259.97367 * 11 9 8 38 38 H 1.09000 * 109.88025 * 20.98532 * 11 9 8 39 39 H 0.96998 * 119.99524 * 180.02562 * 16 15 13 40 40 H 1.09003 * 110.29227 * 216.94505 * 21 12 11 41 41 H 1.08996 * 110.53057 * 94.67717 * 21 12 11 42 42 H 0.96705 * 114.00245 * 292.19608 * 24 22 21 43 43 H 1.07994 * 120.39696 * 0.02929 * 26 25 4 44 44 H 1.08002 * 120.21670 * 180.02562 * 27 26 25 45 45 H 1.07988 * 119.77953 * 180.02562 * 28 27 26 46 46 H 1.08006 * 119.69272 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2554 1.0652 0.0000 4 6 3.5561 0.7080 -0.0025 5 6 4.7065 1.6116 -0.0058 6 8 5.8367 1.1584 -0.0022 7 7 4.5154 2.9458 -0.0131 8 6 5.6676 3.8507 -0.0158 9 6 5.1776 5.3001 -0.0235 10 1 4.5251 5.4806 -0.8777 11 6 4.4547 5.6391 1.2972 12 7 4.8448 7.0056 1.6737 13 6 4.4345 7.6717 2.7978 14 1 3.7659 7.1908 3.4965 15 6 4.8770 8.9652 3.0384 16 7 5.6913 9.5513 2.1866 17 14 4.3167 9.8739 4.5713 18 1 3.4100 9.0017 5.3602 19 1 5.4996 10.2322 5.3945 20 1 3.5947 11.1104 4.1776 21 6 5.7510 7.5382 0.6355 22 6 6.3766 6.2849 -0.0259 23 1 6.7026 6.5009 -1.0433 24 8 7.4578 5.7774 0.7585 25 6 3.5965 -0.6928 0.0047 26 6 4.6394 -1.6294 0.0098 27 6 4.3390 -2.9593 0.0161 28 6 2.9953 -3.3658 0.0180 29 6 2.0034 -2.4496 0.0126 30 7 2.2902 -1.1148 0.0062 31 1 -0.3633 0.0057 1.0276 32 1 -0.3634 0.8871 -0.5189 33 1 -0.3633 -0.8928 -0.5089 34 1 3.6151 3.3068 -0.0157 35 1 6.2721 3.6666 -0.9039 36 1 6.2692 3.6756 0.8761 37 1 3.3755 5.5881 1.1527 38 1 4.7577 4.9391 2.0758 39 1 6.0008 10.4550 2.3550 40 1 6.5267 8.1541 1.0906 41 1 5.1917 8.1162 -0.1001 42 1 8.2301 6.3588 0.7867 43 1 5.6684 -1.3015 0.0088 44 1 5.1296 -3.6951 0.0205 45 1 2.7533 -4.4183 0.0234 46 1 0.9738 -2.7758 0.0137 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958264037.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:32 Heat of formation + Delta-G solvation = 3.837299 kcal Electronic energy + Delta-G solvation = -29521.037771 eV Core-core repulsion = 25411.554435 eV Total energy + Delta-G solvation = -4109.483336 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.93362 -40.69887 -39.67205 -38.50320 -36.33593 -36.05006 -34.64744 -33.94247 -32.56421 -31.61876 -30.89527 -29.50197 -28.11380 -27.13038 -25.56021 -24.87305 -23.98989 -22.29666 -22.17557 -21.40174 -20.99397 -19.21531 -18.94395 -18.19864 -17.83320 -17.32953 -17.25799 -16.85952 -16.70880 -16.42288 -16.25059 -15.77737 -15.65708 -15.47402 -15.04116 -14.61912 -14.43920 -14.42312 -14.03034 -13.94445 -13.66611 -13.44904 -13.19121 -13.09350 -13.05908 -12.72051 -12.64088 -12.61450 -12.31589 -12.05640 -11.87921 -11.82865 -11.71219 -11.69055 -11.63607 -11.08096 -10.82562 -10.67144 -10.41029 -10.12411 -8.87262 -8.52014 -7.80062 -5.22304 -0.38986 0.05855 1.19098 1.40934 1.44879 1.46088 1.56447 2.20689 2.25257 2.47984 2.55674 3.19010 3.27242 3.35108 3.42140 3.58758 3.67743 3.75703 3.87544 3.90782 3.95514 3.98613 4.14618 4.16124 4.42452 4.53516 4.58388 4.62819 4.71452 4.72846 4.80176 4.83018 4.89781 4.99406 5.00209 5.12211 5.22739 5.28600 5.30183 5.38085 5.40113 5.49427 5.53526 5.75670 6.09828 6.27181 6.39925 6.70851 6.97474 7.09887 7.19381 7.75532 8.39876 9.22887 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016782 B = 0.002336 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.030082 B =11984.703577 C =12960.068918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.165 3.835 3 N -0.444 5.444 4 C -0.118 4.118 5 C 0.600 3.400 6 O -0.583 6.583 7 N -0.709 5.709 8 C 0.157 3.843 9 C -0.091 4.091 10 H 0.110 0.890 11 C 0.145 3.855 12 N -0.620 5.620 13 C -0.237 4.237 14 H 0.074 0.926 15 C -0.066 4.066 16 N -0.947 5.947 17 Si 0.981 3.019 18 H -0.271 1.271 19 H -0.290 1.290 20 H -0.288 1.288 21 C 0.127 3.873 22 C 0.095 3.905 23 H 0.093 0.907 24 O -0.569 6.569 25 C 0.075 3.925 26 C -0.120 4.120 27 C -0.079 4.079 28 C -0.131 4.131 29 C 0.052 3.948 30 N -0.364 5.364 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.411 0.589 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.025 0.975 38 H 0.009 0.991 39 H 0.248 0.752 40 H 0.082 0.918 41 H 0.004 0.996 42 H 0.389 0.611 43 H 0.139 0.861 44 H 0.173 0.827 45 H 0.200 0.800 46 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.585 -29.393 -9.137 32.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.093 4.093 3 N -0.160 5.160 4 C -0.250 4.250 5 C 0.389 3.611 6 O -0.464 6.464 7 N -0.359 5.359 8 C 0.034 3.966 9 C -0.110 4.110 10 H 0.128 0.872 11 C 0.019 3.981 12 N -0.346 5.346 13 C -0.366 4.366 14 H 0.092 0.908 15 C -0.258 4.258 16 N -0.597 5.597 17 Si 0.809 3.191 18 H -0.196 1.196 19 H -0.217 1.217 20 H -0.215 1.215 21 C 0.002 3.998 22 C 0.035 3.965 23 H 0.110 0.890 24 O -0.376 6.376 25 C -0.040 4.040 26 C -0.140 4.140 27 C -0.101 4.101 28 C -0.151 4.151 29 C -0.069 4.069 30 N -0.035 5.035 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.127 0.873 34 H 0.246 0.754 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.043 0.957 38 H 0.027 0.973 39 H 0.058 0.942 40 H 0.100 0.900 41 H 0.022 0.978 42 H 0.238 0.762 43 H 0.157 0.843 44 H 0.190 0.810 45 H 0.217 0.783 46 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -9.621 -29.092 -8.935 31.918 hybrid contribution 0.359 1.160 0.848 1.481 sum -9.262 -27.933 -8.086 30.519 Atomic orbital electron populations 1.20420 0.80478 1.05941 1.05047 1.24203 0.97247 0.78375 1.09485 1.69915 1.01358 1.29538 1.15171 1.20241 0.91482 0.90585 1.22642 1.16798 0.86775 0.81961 0.75603 1.90744 1.24550 1.77378 1.53726 1.45781 1.10908 1.05217 1.74016 1.20949 0.87291 0.86549 1.01825 1.22437 0.96753 0.93368 0.98484 0.87158 1.21361 0.96209 0.86371 0.94121 1.44729 1.54699 1.11939 1.23225 1.19444 1.22692 0.96233 0.98259 0.90823 1.25583 1.00534 0.97778 1.01901 1.69990 1.38349 1.13823 1.37564 0.84974 0.77253 0.78129 0.78753 1.19579 1.21696 1.21528 1.22507 0.94161 0.93593 0.89529 1.23083 0.86611 0.92867 0.93951 0.88963 1.86387 1.27417 1.49501 1.74318 1.19454 0.85806 0.93906 1.04804 1.20815 0.98128 0.92763 1.02269 1.21767 0.98837 0.94693 0.94788 1.21534 0.90899 1.02196 1.00436 1.22691 1.04345 0.78471 1.01397 1.43103 1.06647 1.08001 1.45707 0.88780 0.88769 0.87345 0.75357 0.90837 0.92934 0.95666 0.97259 0.94210 0.90017 0.97847 0.76226 0.84280 0.80965 0.78332 0.76896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.61 10.32 71.24 0.74 0.12 16 2 C 0.16 3.47 7.94 137.84 1.09 4.57 16 3 N -0.44 -13.11 10.90 -175.25 -1.91 -15.02 16 4 C -0.12 -3.87 7.05 41.23 0.29 -3.58 16 5 C 0.60 22.27 7.77 86.33 0.67 22.94 16 6 O -0.58 -24.12 15.75 -4.59 -0.07 -24.19 16 7 N -0.71 -24.76 5.40 -467.41 -2.52 -27.28 16 8 C 0.16 5.68 4.59 86.38 0.40 6.08 16 9 C -0.09 -3.37 2.95 -9.60 -0.03 -3.40 16 10 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 11 C 0.14 6.59 6.52 86.73 0.57 7.16 16 12 N -0.62 -33.68 3.41 -691.17 -2.35 -36.03 16 13 C -0.24 -14.00 10.28 84.03 0.86 -13.14 16 14 H 0.07 4.26 7.83 -2.91 -0.02 4.24 16 15 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 16 N -0.95 -56.91 10.11 21.65 0.22 -56.69 16 17 Si 0.98 47.14 29.55 68.60 2.03 49.17 16 18 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 20 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 21 C 0.13 6.32 5.65 86.79 0.49 6.81 16 22 C 0.10 3.66 4.17 31.99 0.13 3.80 16 23 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 24 O -0.57 -22.14 12.22 -148.98 -1.82 -23.96 16 25 C 0.07 2.00 6.72 39.22 0.26 2.27 16 26 C -0.12 -2.65 9.73 22.30 0.22 -2.43 16 27 C -0.08 -0.91 10.08 22.35 0.23 -0.69 16 28 C -0.13 -0.78 9.98 22.06 0.22 -0.56 16 29 C 0.05 0.44 10.77 83.22 0.90 1.33 16 30 N -0.36 -6.93 2.94 -337.19 -0.99 -7.92 16 31 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.11 0.31 7.98 -2.39 -0.02 0.29 16 34 H 0.41 13.55 8.03 -92.71 -0.74 12.80 16 35 H 0.07 2.52 8.14 -2.39 -0.02 2.51 16 36 H 0.05 2.21 7.44 -2.39 -0.02 2.19 16 37 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.01 0.46 7.76 -2.39 -0.02 0.44 16 39 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 40 H 0.08 4.55 5.89 -2.39 -0.01 4.54 16 41 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 42 H 0.39 12.30 9.12 -74.05 -0.68 11.63 16 43 H 0.14 3.54 7.17 -2.91 -0.02 3.52 16 44 H 0.17 0.88 8.06 -2.91 -0.02 0.85 16 45 H 0.20 -0.64 8.06 -2.92 -0.02 -0.67 16 46 H 0.21 -0.28 7.94 -2.91 -0.02 -0.30 16 Total: -1.00 -86.47 382.15 -0.31 -86.78 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: -0.39 Total: 27.23 kcal Atomic # 6 Polarization: 20.41 SS G_CDS: 7.50 Total: 27.91 kcal Atomic # 7 Polarization: -135.38 SS G_CDS: -7.56 Total: -142.93 kcal Atomic # 8 Polarization: -46.26 SS G_CDS: -1.89 Total: -48.15 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -86.47 -0.31 -86.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958264037.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.621 kcal (2) G-P(sol) polarization free energy of solvation -86.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds