Wall clock time and date at job start Wed Apr 1 2020 03:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30093 * 124.97867 * 2 1 4 4 C 1.35850 * 109.53160 * 180.02562 * 3 2 1 5 5 C 1.39724 * 133.50195 * 179.97438 * 4 3 2 6 6 C 1.37840 * 120.10477 * 179.97438 * 5 4 3 7 7 C 1.38333 * 120.72857 * 359.75922 * 6 5 4 8 8 C 1.39396 * 120.28055 * 0.50535 * 7 6 5 9 9 C 1.47526 * 120.24981 * 179.75747 * 8 7 6 10 10 O 1.21592 * 120.00228 * 179.72292 * 9 8 7 11 11 N 1.34774 * 119.99937 * 359.71789 * 9 8 7 12 12 C 1.46504 * 119.99981 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47036 * 180.02562 * 12 11 9 14 14 H 1.09002 * 110.78272 * 51.75735 * 13 12 11 15 15 C 1.54327 * 110.71739 * 288.52195 * 13 12 11 16 16 N 1.47014 * 107.27187 * 219.44553 * 15 13 12 17 17 C 1.36941 * 125.65028 * 178.98893 * 16 15 13 18 18 H 1.08001 * 119.99881 * 359.97438 * 17 16 15 19 19 C 1.38810 * 120.00004 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00364 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00071 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46867 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47240 * 119.99641 * 21 19 17 24 24 H 1.48505 * 109.47038 * 240.00124 * 21 19 17 25 25 C 1.47419 * 108.70437 * 358.94082 * 16 15 13 26 26 C 1.54912 * 104.83306 * 24.12578 * 25 16 15 27 27 H 1.08995 * 111.03828 * 204.90274 * 26 25 16 28 28 O 1.42903 * 110.99758 * 81.06681 * 26 25 16 29 29 C 1.40196 * 119.50142 * 359.47775 * 8 7 6 30 30 N 1.36122 * 124.97926 * 180.02562 * 2 1 3 31 31 H 0.96992 * 126.30937 * 359.97438 * 30 2 1 32 32 H 1.08994 * 109.47099 * 90.02879 * 1 2 3 33 33 H 1.08998 * 109.46757 * 210.03009 * 1 2 3 34 34 H 1.09007 * 109.46940 * 330.02513 * 1 2 3 35 35 H 1.07994 * 119.94995 * 0.02562 * 5 4 3 36 36 H 1.08002 * 119.63618 * 179.97438 * 6 5 4 37 37 H 1.08002 * 119.85857 * 180.25749 * 7 6 5 38 38 H 0.97000 * 119.99775 * 0.02562 * 11 9 8 39 39 H 1.08996 * 109.46660 * 60.00162 * 12 11 9 40 40 H 1.08998 * 109.47245 * 300.00289 * 12 11 9 41 41 H 1.08999 * 109.88583 * 338.86569 * 15 13 12 42 42 H 1.09001 * 109.88372 * 100.02571 * 15 13 12 43 43 H 0.96996 * 119.99935 * 179.97438 * 20 19 17 44 44 H 1.09009 * 110.36844 * 265.29198 * 25 16 15 45 45 H 1.09002 * 110.37005 * 142.96697 * 25 16 15 46 46 H 0.96700 * 114.00311 * 67.80834 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2528 1.0659 0.0000 4 6 3.5622 0.7041 -0.0006 5 6 4.7592 1.4248 -0.0013 6 6 5.9666 0.7598 -0.0012 7 6 6.0121 -0.6227 0.0045 8 6 4.8321 -1.3649 -0.0002 9 6 4.8815 -2.8393 0.0005 10 8 3.8494 -3.4822 0.0014 11 7 6.0705 -3.4737 0.0001 12 6 6.1195 -4.9380 0.0003 13 6 7.5783 -5.3994 0.0003 14 1 8.1373 -4.9145 0.8007 15 6 8.2371 -5.1270 -1.3684 16 7 9.0985 -6.2783 -1.6751 17 6 9.8458 -6.4356 -2.8117 18 1 9.8319 -5.6736 -3.5769 19 6 10.6211 -7.5746 -2.9805 20 7 10.6385 -8.5031 -2.0478 21 14 11.6400 -7.7896 -4.5314 22 1 11.4483 -6.6127 -5.4166 23 1 13.0752 -7.9067 -4.1685 24 1 11.2068 -9.0197 -5.2416 25 6 9.0254 -7.2348 -0.5557 26 6 7.6657 -6.9432 0.1270 27 1 7.6794 -7.2493 1.1730 28 8 6.5940 -7.5763 -0.5751 29 6 3.5981 -0.6995 0.0002 30 7 2.2874 -1.1153 -0.0005 31 1 1.9762 -2.0340 -0.0006 32 1 -0.3633 -0.0005 -1.0276 33 1 -0.3633 -0.8897 0.5143 34 1 -0.3633 0.8903 0.5135 35 1 4.7385 2.5045 -0.0010 36 1 6.8873 1.3244 -0.0022 37 1 6.9660 -1.1293 0.0087 38 1 6.8939 -2.9609 -0.0003 39 1 5.6178 -5.3183 -0.8895 40 1 5.6185 -5.3182 0.8905 41 1 7.4696 -5.0236 -2.1353 42 1 8.8372 -4.2185 -1.3168 43 1 11.1800 -9.2991 -2.1659 44 1 9.8447 -7.0647 0.1429 45 1 9.0505 -8.2586 -0.9292 46 1 6.6067 -8.5419 -0.5244 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958571118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:52 Heat of formation + Delta-G solvation = -14.828745 kcal Electronic energy + Delta-G solvation = -29451.248943 eV Core-core repulsion = 25340.956186 eV Total energy + Delta-G solvation = -4110.292757 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.27281 -40.94255 -39.78765 -38.17217 -36.34403 -36.16280 -34.22327 -33.97551 -32.33859 -31.89217 -30.81154 -29.36561 -28.60860 -27.28955 -25.62276 -24.09986 -23.34430 -22.29827 -21.94755 -21.55857 -21.04207 -19.21305 -19.06793 -18.56583 -18.03531 -17.46726 -16.84366 -16.80200 -16.76421 -16.26543 -16.05392 -15.80233 -15.56845 -15.21561 -15.12282 -14.60922 -14.45158 -14.21699 -14.00518 -13.84805 -13.66910 -13.50417 -13.18283 -13.08393 -13.03699 -12.84504 -12.67677 -12.53120 -12.31527 -12.03866 -11.87173 -11.83043 -11.76225 -11.66880 -11.41724 -10.94439 -10.81146 -10.66645 -10.22415 -9.42764 -9.23264 -8.85514 -7.79304 -5.21273 -0.50218 0.42202 1.37153 1.45970 1.46775 1.56648 1.91285 1.99928 2.05414 2.48421 2.82605 3.11158 3.27268 3.34633 3.51245 3.59888 3.78510 3.88707 3.89709 3.97517 4.00909 4.17982 4.20941 4.34180 4.43082 4.55335 4.59995 4.63587 4.67708 4.78533 4.83084 4.89684 4.93721 5.00653 5.02700 5.22622 5.27197 5.35624 5.36309 5.39780 5.40300 5.51341 5.77485 5.77960 6.28893 6.31511 6.43832 6.76817 6.95183 7.07177 7.11267 7.78047 8.40410 9.23011 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018234 B = 0.002239 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.266349 B =12503.524592 C =13216.780213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.279 3.721 3 N -0.521 5.521 4 C 0.011 3.989 5 C -0.041 4.041 6 C -0.128 4.128 7 C -0.053 4.053 8 C -0.151 4.151 9 C 0.558 3.442 10 O -0.587 6.587 11 N -0.707 5.707 12 C 0.158 3.842 13 C -0.091 4.091 14 H 0.118 0.882 15 C 0.141 3.859 16 N -0.621 5.621 17 C -0.234 4.234 18 H 0.077 0.923 19 C -0.066 4.066 20 N -0.948 5.948 21 Si 0.977 3.023 22 H -0.270 1.270 23 H -0.290 1.290 24 H -0.293 1.293 25 C 0.127 3.873 26 C 0.092 3.908 27 H 0.090 0.910 28 O -0.570 6.570 29 C 0.074 3.926 30 N -0.587 5.587 31 H 0.433 0.567 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.153 0.847 36 H 0.176 0.824 37 H 0.162 0.838 38 H 0.414 0.586 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.012 0.988 42 H 0.036 0.964 43 H 0.247 0.753 44 H 0.003 0.997 45 H 0.079 0.921 46 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.519 17.415 9.000 24.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.013 3.987 3 N -0.243 5.243 4 C -0.107 4.107 5 C -0.060 4.060 6 C -0.148 4.148 7 C -0.073 4.073 8 C -0.158 4.158 9 C 0.347 3.653 10 O -0.470 6.470 11 N -0.359 5.359 12 C 0.034 3.966 13 C -0.110 4.110 14 H 0.136 0.864 15 C 0.016 3.984 16 N -0.347 5.347 17 C -0.363 4.363 18 H 0.095 0.905 19 C -0.259 4.259 20 N -0.598 5.598 21 Si 0.806 3.194 22 H -0.194 1.194 23 H -0.217 1.217 24 H -0.220 1.220 25 C 0.001 3.999 26 C 0.032 3.968 27 H 0.108 0.892 28 O -0.378 6.378 29 C -0.040 4.040 30 N -0.199 5.199 31 H 0.275 0.725 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.171 0.829 36 H 0.193 0.807 37 H 0.179 0.821 38 H 0.252 0.748 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.030 0.970 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.021 0.979 45 H 0.097 0.903 46 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -15.505 18.311 8.762 25.544 hybrid contribution 1.390 -2.257 -0.839 2.781 sum -14.115 16.054 7.922 22.798 Atomic orbital electron populations 1.20609 0.80891 1.06174 1.05701 1.24585 0.97511 0.80311 0.96322 1.70470 1.00892 1.28503 1.24455 1.19523 0.93265 0.90093 1.07832 1.20865 0.88687 1.01125 0.95359 1.21265 0.98594 0.93494 1.01408 1.21577 0.96397 0.94973 0.94361 1.18917 0.92018 0.91525 1.13298 1.18438 0.83578 0.87673 0.75595 1.90662 1.34602 1.68773 1.52934 1.45837 1.08421 1.07743 1.73853 1.20924 0.95478 0.78444 1.01772 1.22464 0.95084 0.95036 0.98385 0.86420 1.21466 0.92169 0.90522 0.94235 1.44651 1.51788 1.19603 1.18617 1.19449 1.18310 1.03078 0.95492 0.90534 1.25552 1.01988 0.96936 1.01383 1.69993 1.44740 1.10408 1.34643 0.85023 0.77873 0.77478 0.79037 1.19414 1.21737 1.22034 1.22449 0.92392 0.96893 0.88143 1.23123 0.86942 0.91940 0.94819 0.89240 1.86378 1.48847 1.25102 1.77437 1.18894 0.85600 0.95180 1.04300 1.43273 1.04589 1.11047 1.60989 0.72516 0.87792 0.88130 0.87487 0.82891 0.80697 0.82073 0.74848 0.93152 0.91039 0.97028 0.94612 0.94336 0.97898 0.90346 0.76308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.51 71.24 0.75 -0.01 16 2 C 0.28 5.79 8.08 137.90 1.11 6.91 16 3 N -0.52 -13.12 11.28 -179.95 -2.03 -15.15 16 4 C 0.01 0.27 7.22 39.41 0.28 0.55 16 5 C -0.04 -0.75 10.09 22.53 0.23 -0.52 16 6 C -0.13 -1.80 9.99 22.20 0.22 -1.58 16 7 C -0.05 -0.90 9.53 22.57 0.22 -0.69 16 8 C -0.15 -3.67 5.88 -20.07 -0.12 -3.79 16 9 C 0.56 15.72 7.76 86.69 0.67 16.39 16 10 O -0.59 -20.08 15.29 -4.01 -0.06 -20.14 16 11 N -0.71 -17.47 5.42 -466.28 -2.53 -20.00 16 12 C 0.16 4.62 4.50 86.38 0.39 5.01 16 13 C -0.09 -2.78 2.89 -9.61 -0.03 -2.81 16 14 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 15 C 0.14 5.55 6.75 86.73 0.59 6.13 16 16 N -0.62 -31.05 3.39 -691.99 -2.35 -33.40 16 17 C -0.23 -13.00 10.27 84.03 0.86 -12.13 16 18 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 19 C -0.07 -3.70 5.49 84.86 0.47 -3.24 16 20 N -0.95 -54.91 10.09 21.65 0.22 -54.70 16 21 Si 0.98 45.31 29.55 68.60 2.03 47.34 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 23 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 24 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 25 C 0.13 5.85 5.62 86.86 0.49 6.33 16 26 C 0.09 3.18 4.17 31.98 0.13 3.31 16 27 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 28 O -0.57 -20.30 12.33 -148.98 -1.84 -22.14 16 29 C 0.07 1.94 6.88 39.26 0.27 2.21 16 30 N -0.59 -13.86 6.00 -178.61 -1.07 -14.93 16 31 H 0.43 9.77 7.72 -92.71 -0.72 9.05 16 32 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 36 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 37 H 0.16 1.79 6.39 -2.91 -0.02 1.77 16 38 H 0.41 7.80 6.50 -92.71 -0.60 7.20 16 39 H 0.05 1.82 7.52 -2.39 -0.02 1.80 16 40 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.01 0.50 7.68 -2.39 -0.02 0.48 16 42 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 44 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 45 H 0.08 4.16 5.88 -2.39 -0.01 4.15 16 46 H 0.39 11.31 9.12 -74.06 -0.68 10.63 16 Total: -1.00 -79.15 378.51 -2.04 -81.19 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: -0.94 Total: 29.86 kcal Atomic # 6 Polarization: 15.54 SS G_CDS: 6.53 Total: 22.07 kcal Atomic # 7 Polarization: -130.42 SS G_CDS: -7.76 Total: -138.18 kcal Atomic # 8 Polarization: -40.38 SS G_CDS: -1.90 Total: -42.28 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -79.15 -2.04 -81.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958571118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.360 kcal (2) G-P(sol) polarization free energy of solvation -79.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds