Wall clock time and date at job start Wed Apr 1 2020 03:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47280 * 2 1 4 4 C 1.53003 * 109.47235 * 240.00304 * 2 1 3 5 5 C 1.53000 * 109.47351 * 119.99979 * 2 1 3 6 6 C 1.50700 * 109.46946 * 59.99895 * 5 2 1 7 7 O 1.21284 * 119.99967 * 0.02562 * 6 5 2 8 8 N 1.34779 * 119.99820 * 180.02562 * 6 5 2 9 9 C 1.46500 * 119.99680 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.46926 * 180.02562 * 9 8 6 11 11 O 1.42901 * 113.01858 * 53.33456 * 10 9 8 12 12 C 1.53946 * 113.73974 * 184.99826 * 10 9 8 13 13 N 1.47580 * 86.24073 * 137.89466 * 12 10 9 14 14 C 1.34775 * 134.49629 * 155.42618 * 13 12 10 15 15 O 1.21285 * 119.99928 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00193 * 180.02562 * 14 13 12 17 17 S 1.81004 * 109.47021 * 179.97438 * 16 14 13 18 18 C 1.76203 * 99.99967 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99599 * 359.97438 * 18 17 16 20 20 C 1.38792 * 120.00136 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00356 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99836 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47805 * 89.99875 * 22 20 18 24 24 H 1.48503 * 109.47191 * 210.00104 * 22 20 18 25 25 H 1.48504 * 109.47257 * 329.99651 * 22 20 18 26 26 C 1.47812 * 90.92375 * 335.45714 * 13 12 10 27 27 H 1.08995 * 109.46970 * 300.00082 * 1 2 3 28 28 H 1.08997 * 109.47120 * 59.99881 * 1 2 3 29 29 H 1.08994 * 109.47168 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47103 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47141 * 300.00106 * 3 2 1 32 32 H 1.09002 * 109.46811 * 59.99958 * 3 2 1 33 33 H 1.09007 * 109.46930 * 299.99700 * 4 2 1 34 34 H 1.08997 * 109.47217 * 59.99875 * 4 2 1 35 35 H 1.08998 * 109.47068 * 180.02562 * 4 2 1 36 36 H 1.08995 * 109.47034 * 299.99900 * 5 2 1 37 37 H 1.09005 * 109.47162 * 180.02562 * 5 2 1 38 38 H 0.96996 * 119.99892 * 359.97438 * 8 6 5 39 39 H 1.08995 * 109.47548 * 59.99903 * 9 8 6 40 40 H 1.09005 * 109.47131 * 299.99723 * 9 8 6 41 41 H 0.96698 * 113.99808 * 311.65961 * 11 10 9 42 42 H 1.09002 * 113.76900 * 252.25169 * 12 10 9 43 43 H 1.09000 * 113.76969 * 23.53590 * 12 10 9 44 44 H 1.08997 * 109.47041 * 299.99450 * 16 14 13 45 45 H 1.09000 * 109.47579 * 59.99837 * 16 14 13 46 46 H 0.96996 * 120.00427 * 180.02562 * 21 20 18 47 47 H 1.08996 * 113.67199 * 270.23445 * 26 13 12 48 48 H 1.08996 * 113.93703 * 138.88096 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 6 1.5377 -2.1420 1.2492 7 8 0.8407 -2.5388 0.3394 8 7 1.8629 -2.9718 2.2603 9 6 1.3750 -4.3531 2.2600 10 6 1.8839 -5.0740 3.5100 11 8 1.5775 -4.3783 4.7200 12 6 1.5294 -6.5716 3.5492 13 7 2.9036 -6.7844 4.0436 14 6 3.5058 -7.7409 4.7777 15 8 2.8666 -8.6910 5.1775 16 6 4.9730 -7.6292 5.1030 17 16 5.4814 -9.0555 6.0947 18 6 7.1868 -8.6764 6.3241 19 1 7.6024 -7.7766 5.8951 20 6 7.9961 -9.5342 7.0560 21 7 9.2701 -9.2513 7.2269 22 14 7.2774 -11.0910 7.7972 23 1 7.4008 -12.2056 6.8238 24 1 8.0155 -11.4344 9.0391 25 1 5.8443 -10.8706 8.1182 26 6 3.3520 -5.5266 3.4099 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7216 -1.2490 36 1 1.6767 -0.2074 2.1392 37 1 3.1301 -0.7208 1.2494 38 1 2.4206 -2.6545 2.9878 39 1 1.7390 -4.8669 1.3703 40 1 0.2849 -4.3535 2.2593 41 1 1.7987 -3.4372 4.6993 42 1 0.7572 -6.8213 4.2769 43 1 1.3439 -7.0051 2.5665 44 1 5.5494 -7.6053 4.1782 45 1 5.1517 -6.7133 5.6663 46 1 9.8358 -9.8510 7.7381 47 1 3.7038 -5.6535 2.3861 48 1 4.0351 -4.9406 4.0247 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041490976.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:13 Heat of formation + Delta-G solvation = -90.699880 kcal Electronic energy + Delta-G solvation = -27565.810301 eV Core-core repulsion = 23555.378725 eV Total energy + Delta-G solvation = -4010.431576 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.10995 -40.30807 -38.26367 -37.01279 -35.65839 -34.73500 -32.46441 -31.02755 -29.76840 -28.17642 -27.57657 -27.53395 -26.62489 -25.78095 -25.43241 -21.33122 -21.17641 -19.61458 -19.30306 -18.04628 -17.71495 -17.08461 -16.81570 -16.23542 -16.09633 -15.67981 -15.42220 -15.01167 -14.95796 -14.80163 -14.64324 -14.47584 -14.09727 -13.82540 -13.63517 -13.25445 -13.15333 -12.93654 -12.79529 -12.51887 -12.47466 -12.28967 -12.16876 -12.05291 -11.66832 -11.53209 -11.39290 -11.26487 -11.13734 -11.05741 -11.02466 -10.64434 -10.60228 -9.93490 -9.86907 -9.62018 -9.50476 -9.02634 -8.77426 -8.52837 -6.94833 -6.31206 -4.03318 2.17115 2.46176 2.56720 2.89631 3.04183 3.31707 3.36553 3.49456 3.54831 3.76344 4.12833 4.17039 4.26640 4.31111 4.38517 4.41137 4.67129 4.73752 4.98012 5.00090 5.05093 5.06188 5.07474 5.07886 5.10351 5.15502 5.21797 5.25706 5.37037 5.42273 5.44281 5.50489 5.56696 5.66039 5.71481 5.73448 5.78786 5.84144 5.85182 5.97056 6.10459 6.20711 6.88176 7.04825 7.62936 7.75143 7.91740 8.37064 8.38684 9.14929 10.77930 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.021885 B = 0.001847 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.100358 B =15159.493409 C =15962.486191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.052 4.052 3 C -0.143 4.143 4 C -0.154 4.154 5 C -0.134 4.134 6 C 0.517 3.483 7 O -0.525 6.525 8 N -0.735 5.735 9 C 0.103 3.897 10 C 0.083 3.917 11 O -0.522 6.522 12 C 0.127 3.873 13 N -0.643 5.643 14 C 0.558 3.442 15 O -0.514 6.514 16 C -0.115 4.115 17 S -0.141 6.141 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.078 3.922 27 H 0.046 0.954 28 H 0.051 0.949 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.051 0.949 35 H 0.046 0.954 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.398 0.602 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.376 0.624 42 H 0.094 0.906 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.271 0.729 47 H 0.095 0.905 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.403 22.422 -14.827 31.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.052 4.052 3 C -0.201 4.201 4 C -0.211 4.211 5 C -0.174 4.174 6 C 0.304 3.696 7 O -0.401 6.401 8 N -0.389 5.389 9 C -0.021 4.021 10 C 0.040 3.960 11 O -0.327 6.327 12 C 0.003 3.997 13 N -0.381 5.381 14 C 0.348 3.652 15 O -0.388 6.388 16 C -0.266 4.266 17 S 0.085 5.915 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.045 4.045 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.233 0.767 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.224 0.776 42 H 0.112 0.888 43 H 0.118 0.882 44 H 0.113 0.887 45 H 0.114 0.886 46 H 0.081 0.919 47 H 0.113 0.887 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -17.771 19.885 -14.484 30.348 hybrid contribution 1.418 1.222 0.129 1.876 sum -16.353 21.107 -14.355 30.315 Atomic orbital electron populations 1.22108 0.94036 1.04022 1.00928 1.20279 0.96409 0.94581 0.93949 1.21907 1.00961 0.95202 1.01986 1.22114 1.00079 1.02750 0.96196 1.21819 1.02617 0.92157 1.00801 1.20739 0.79897 0.87713 0.81212 1.90613 1.37263 1.77204 1.35049 1.46004 1.54538 1.12275 1.26070 1.21899 1.00790 0.81831 0.97616 1.23069 0.94974 0.93338 0.84588 1.86686 1.86295 1.25520 1.34197 1.23076 0.86947 0.88896 1.00742 1.49735 1.11328 1.23791 1.53278 1.19960 0.88750 0.80003 0.76513 1.90719 1.65825 1.30592 1.51698 1.23204 0.93416 1.05353 1.04577 1.84816 1.11876 1.28083 1.66678 1.22295 0.91520 1.12993 1.40089 0.89407 1.24704 0.94131 0.97826 0.94611 1.69930 1.04679 1.37695 1.39327 0.86737 0.81914 0.83521 0.79707 1.19179 1.19878 1.15907 1.23960 0.96854 0.84603 0.99128 0.93528 0.93024 0.89863 0.92588 0.92325 0.92645 0.89850 0.93021 0.93444 0.88760 0.88672 0.76725 0.89517 0.89811 0.77584 0.88773 0.88164 0.88675 0.88589 0.91911 0.88655 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 8.18 37.16 0.30 -0.72 16 2 C -0.05 -0.29 0.77 -154.51 -0.12 -0.41 16 3 C -0.14 -0.65 8.47 37.16 0.31 -0.33 16 4 C -0.15 -1.06 8.18 37.16 0.30 -0.75 16 5 C -0.13 -0.57 4.77 -27.88 -0.13 -0.70 16 6 C 0.52 3.26 7.24 -10.98 -0.08 3.18 16 7 O -0.52 -5.09 11.35 5.55 0.06 -5.02 16 8 N -0.73 -3.21 5.32 -60.29 -0.32 -3.53 16 9 C 0.10 0.59 5.28 -4.04 -0.02 0.57 16 10 C 0.08 0.60 1.53 -89.68 -0.14 0.46 16 11 O -0.52 -4.21 13.51 -35.23 -0.48 -4.69 16 12 C 0.13 1.28 8.23 -2.97 -0.02 1.26 16 13 N -0.64 -8.64 3.62 -177.27 -0.64 -9.29 16 14 C 0.56 10.46 8.08 -10.99 -0.09 10.38 16 15 O -0.51 -11.67 16.59 5.55 0.09 -11.58 16 16 C -0.12 -2.29 5.91 36.01 0.21 -2.07 16 17 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 18 C -0.52 -15.04 10.04 30.94 0.31 -14.72 16 19 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 20 C 0.10 2.81 5.50 -17.44 -0.10 2.71 16 21 N -0.88 -26.45 13.97 55.49 0.78 -25.67 16 22 Si 0.86 21.83 27.74 -169.99 -4.71 17.11 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 26 C 0.08 0.67 8.02 -2.85 -0.02 0.64 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.73 5.51 -51.93 -0.29 0.44 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.08 0.74 5.51 -51.93 -0.29 0.46 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.40 0.73 7.31 -40.82 -0.30 0.43 16 39 H 0.09 0.52 8.04 -51.93 -0.42 0.10 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.38 1.40 7.58 45.56 0.35 1.75 16 42 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.10 0.79 8.10 -51.93 -0.42 0.37 16 44 H 0.09 1.76 8.14 -51.92 -0.42 1.33 16 45 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 46 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 47 H 0.10 0.65 8.03 -51.93 -0.42 0.24 16 48 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 402.20 15.07 6.06 6.06 Total: -1.00 -37.57 402.20 -7.71 -45.28 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -7.28 Total: -2.54 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 0.72 Total: -0.52 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: -0.19 Total: -38.49 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.32 Total: -21.29 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.11 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -37.57 -7.71 -45.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041490976.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.421 kcal (2) G-P(sol) polarization free energy of solvation -37.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds