Wall clock time and date at job start Wed Apr 1 2020 03:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30226 * 124.92329 * 2 1 4 4 C 1.35554 * 109.70957 * 180.02562 * 3 2 1 5 5 C 1.40009 * 133.40959 * 180.02562 * 4 3 2 6 6 C 1.36187 * 120.08054 * 180.02562 * 5 4 3 7 7 C 1.40176 * 120.52280 * 0.02562 * 6 5 4 8 8 C 1.47607 * 119.94095 * 179.97438 * 7 6 5 9 9 O 1.21584 * 119.99934 * 222.39314 * 8 7 6 10 10 N 1.34771 * 119.99863 * 42.38521 * 8 7 6 11 11 C 1.46498 * 120.00530 * 355.38225 * 10 8 7 12 12 C 1.46505 * 119.99943 * 175.37768 * 10 8 7 13 13 H 1.09004 * 110.63626 * 358.31562 * 12 10 8 14 14 C 1.54316 * 110.72234 * 121.45510 * 12 10 8 15 15 N 1.47025 * 107.27265 * 140.73512 * 14 12 10 16 16 C 1.36933 * 125.64672 * 181.02812 * 15 14 12 17 17 H 1.08000 * 120.00188 * 9.53038 * 16 15 14 18 18 C 1.38813 * 119.99731 * 189.53274 * 16 15 14 19 19 N 1.31614 * 120.00104 * 205.96521 * 18 16 15 20 20 Si 1.86805 * 119.99930 * 25.68822 * 18 16 15 21 21 H 1.48492 * 109.47446 * 270.27616 * 20 18 16 22 22 H 1.48504 * 109.47082 * 30.27803 * 20 18 16 23 23 H 1.48501 * 109.47066 * 150.27507 * 20 18 16 24 24 C 1.47427 * 108.70044 * 1.28658 * 15 14 12 25 25 C 1.55127 * 104.72282 * 335.55304 * 24 15 14 26 26 H 1.09003 * 111.19500 * 279.19053 * 25 24 15 27 27 O 1.42902 * 110.93732 * 155.28940 * 25 24 15 28 28 C 1.39377 * 120.12178 * 0.25605 * 7 6 5 29 29 C 1.38413 * 119.57126 * 359.45358 * 28 7 6 30 30 N 1.35849 * 124.93180 * 180.02562 * 2 1 3 31 31 H 0.97007 * 126.36577 * 359.97438 * 30 2 1 32 32 H 1.08997 * 109.47327 * 90.02852 * 1 2 3 33 33 H 1.09005 * 109.46394 * 210.02065 * 1 2 3 34 34 H 1.08992 * 109.47283 * 330.02303 * 1 2 3 35 35 H 1.08000 * 119.96356 * 359.97438 * 5 4 3 36 36 H 1.08002 * 119.74159 * 180.02562 * 6 5 4 37 37 H 1.08997 * 109.46800 * 275.46858 * 11 10 8 38 38 H 1.09002 * 109.46851 * 35.45872 * 11 10 8 39 39 H 1.08993 * 109.47594 * 155.46495 * 11 10 8 40 40 H 1.09010 * 109.88184 * 21.31839 * 14 12 10 41 41 H 1.09000 * 109.88495 * 260.15818 * 14 12 10 42 42 H 0.96996 * 120.00294 * 354.68337 * 19 18 16 43 43 H 1.09001 * 110.36151 * 94.48505 * 24 15 14 44 44 H 1.08999 * 110.36257 * 216.80564 * 24 15 14 45 45 H 0.96693 * 114.00355 * 67.95489 * 27 25 24 46 46 H 1.07991 * 120.21518 * 179.72206 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2525 1.0678 0.0000 4 6 3.5605 0.7120 -0.0006 5 6 4.7559 1.4410 -0.0004 6 6 5.9522 0.7903 -0.0016 7 6 6.0007 -0.6106 -0.0037 8 6 7.3044 -1.3027 -0.0056 9 8 7.4763 -2.2736 -0.7171 10 7 8.3044 -0.8583 0.7811 11 6 8.1321 0.3695 1.5615 12 6 9.5637 -1.6032 0.8560 13 1 9.5155 -2.5021 0.2414 14 6 10.7505 -0.7135 0.4301 15 7 11.8742 -1.0271 1.3249 16 6 13.1097 -0.4376 1.2911 17 1 13.2773 0.4300 0.6700 18 6 14.1468 -0.9551 2.0550 19 7 15.1328 -0.1737 2.4416 20 14 14.1388 -2.7588 2.5410 21 1 13.4287 -2.9197 3.8352 22 1 13.4448 -3.5506 1.4937 23 1 15.5368 -3.2400 2.6804 24 6 11.4525 -2.0856 2.2604 25 6 9.9076 -1.9611 2.3261 26 1 9.6051 -1.1626 3.0036 27 8 9.3108 -3.2033 2.7040 28 6 4.8200 -1.3513 -0.0099 29 6 3.6016 -0.6946 -0.0024 30 7 2.2849 -1.1137 -0.0005 31 1 1.9738 -2.0326 -0.0006 32 1 -0.3634 -0.0005 -1.0276 33 1 -0.3632 -0.8899 0.5142 34 1 -0.3633 0.8901 0.5134 35 1 4.7292 2.5207 0.0000 36 1 6.8710 1.3581 -0.0011 37 1 8.3693 1.2320 0.9387 38 1 7.0995 0.4410 1.9030 39 1 8.7993 0.3490 2.4231 40 1 10.4799 0.3378 0.5291 41 1 11.0260 -0.9319 -0.6016 42 1 15.1757 0.7436 2.1294 43 1 11.7407 -3.0653 1.8793 44 1 11.8885 -1.9173 3.2451 45 1 9.4980 -3.4687 3.6148 46 1 4.8556 -2.4306 -0.0160 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047581332.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:02 Heat of formation + Delta-G solvation = 36.232328 kcal Electronic energy + Delta-G solvation = -29964.850023 eV Core-core repulsion = 25856.771441 eV Total energy + Delta-G solvation = -4108.078582 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.52562 -40.31789 -38.38955 -37.09713 -35.48759 -35.00239 -33.54605 -32.31126 -31.74741 -30.41834 -29.40443 -28.06444 -27.65357 -26.88581 -24.21711 -23.11946 -22.77822 -21.34924 -21.15022 -20.50024 -19.29782 -18.36390 -17.81607 -17.52282 -17.24443 -16.45295 -16.29085 -15.89594 -15.44786 -15.08037 -14.57278 -14.31847 -14.29756 -14.07995 -13.75045 -13.57994 -13.53639 -13.43721 -13.20539 -13.08952 -12.75369 -12.60722 -12.44579 -12.29277 -11.97094 -11.85259 -11.54973 -11.45783 -11.11200 -11.03546 -10.74273 -10.38431 -10.18683 -10.01776 -9.85972 -9.48708 -9.29382 -8.72791 -8.62151 -8.50591 -8.38315 -7.17586 -6.38822 -3.25852 0.41127 1.12423 2.20328 2.38452 2.82440 2.99519 3.35021 3.50896 3.58238 3.63911 3.68571 4.18268 4.25434 4.42622 4.53778 4.66649 4.69555 4.90890 4.92931 4.95087 5.01776 5.07863 5.08780 5.13752 5.24427 5.28326 5.30688 5.35077 5.44341 5.52004 5.68641 5.77017 5.79875 5.83741 5.97474 6.09357 6.12532 6.31875 6.33521 6.44725 6.45499 6.56683 6.71511 6.89654 7.40175 7.47574 7.57843 7.84420 8.15796 8.27297 8.96485 9.50544 10.15450 11.09909 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.028535 B = 0.002349 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.012986 B =11914.636962 C =12374.374347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.287 3.713 3 N -0.495 5.495 4 C 0.068 3.932 5 C -0.072 4.072 6 C -0.100 4.100 7 C -0.106 4.106 8 C 0.564 3.436 9 O -0.533 6.533 10 N -0.594 5.594 11 C 0.069 3.931 12 C 0.137 3.863 13 H 0.116 0.884 14 C 0.131 3.869 15 N -0.602 5.602 16 C -0.329 4.329 17 H 0.080 0.920 18 C -0.019 4.019 19 N -0.917 5.917 20 Si 1.062 2.938 21 H -0.295 1.295 22 H -0.285 1.285 23 H -0.297 1.297 24 C 0.077 3.923 25 C 0.079 3.921 26 H 0.072 0.928 27 O -0.559 6.559 28 C -0.051 4.051 29 C 0.036 3.964 30 N -0.595 5.595 31 H 0.424 0.576 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.136 0.864 36 H 0.143 0.857 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.039 0.961 41 H 0.038 0.962 42 H 0.263 0.737 43 H 0.045 0.955 44 H 0.066 0.934 45 H 0.376 0.624 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.403 -0.063 -1.270 29.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.021 3.979 3 N -0.217 5.217 4 C -0.051 4.051 5 C -0.091 4.091 6 C -0.121 4.121 7 C -0.111 4.111 8 C 0.353 3.647 9 O -0.410 6.410 10 N -0.325 5.325 11 C -0.074 4.074 12 C 0.033 3.967 13 H 0.134 0.866 14 C 0.004 3.996 15 N -0.331 5.331 16 C -0.456 4.456 17 H 0.097 0.903 18 C -0.220 4.220 19 N -0.558 5.558 20 Si 0.895 3.105 21 H -0.223 1.223 22 H -0.212 1.212 23 H -0.225 1.225 24 C -0.049 4.049 25 C 0.018 3.982 26 H 0.090 0.910 27 O -0.364 6.364 28 C -0.072 4.072 29 C -0.073 4.073 30 N -0.207 5.207 31 H 0.263 0.737 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.116 0.884 35 H 0.154 0.846 36 H 0.161 0.839 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.084 0.916 45 H 0.223 0.777 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -28.866 -0.744 -1.406 28.910 hybrid contribution -0.385 -0.127 -0.341 0.530 sum -29.252 -0.870 -1.747 29.317 Atomic orbital electron populations 1.20407 0.83991 1.04871 1.04416 1.23684 0.95801 0.81001 0.97461 1.70405 1.00917 1.27495 1.22847 1.19210 0.92098 0.90180 1.03637 1.19924 0.88609 1.00066 1.00505 1.21055 0.98548 0.92839 0.99624 1.19528 0.92531 0.93801 1.05254 1.18128 0.83429 0.83442 0.79738 1.90794 1.82330 1.27312 1.40561 1.47616 1.14354 1.25907 1.44623 1.22117 1.02738 0.86022 0.96501 1.22154 0.82381 0.96062 0.96058 0.86589 1.21593 0.86661 0.96680 0.94659 1.44639 1.10404 1.43799 1.34296 1.20045 0.85672 1.09825 1.30073 0.90263 1.25833 0.93502 1.05561 0.97128 1.70911 1.36857 1.08317 1.39678 0.83899 0.74741 0.76256 0.75654 1.22324 1.21189 1.22511 1.22721 0.92311 0.93836 0.96009 1.23466 0.93297 0.85858 0.95581 0.91003 1.86488 1.75772 1.39543 1.34576 1.19869 0.87787 0.99837 0.99721 1.18657 0.85232 0.95348 1.08098 1.43014 1.04767 1.10017 1.62930 0.73690 0.89175 0.90055 0.88353 0.84590 0.83933 0.91835 0.90580 0.90228 0.94267 0.94413 0.92610 0.93761 0.91577 0.77687 0.84974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.26 10.51 36.01 0.38 0.11 16 2 C 0.29 2.33 8.07 -154.90 -1.25 1.08 16 3 N -0.50 -5.66 11.26 -8.19 -0.09 -5.75 16 4 C 0.07 0.81 7.23 -84.62 -0.61 0.20 16 5 C -0.07 -0.76 10.03 -39.66 -0.40 -1.15 16 6 C -0.10 -1.07 7.55 -39.59 -0.30 -1.37 16 7 C -0.11 -1.36 5.13 -104.92 -0.54 -1.90 16 8 C 0.56 8.92 7.30 -12.44 -0.09 8.83 16 9 O -0.53 -10.31 16.33 5.29 0.09 -10.23 16 10 N -0.59 -8.98 2.89 -173.04 -0.50 -9.48 16 11 C 0.07 0.80 7.69 59.85 0.46 1.26 16 12 C 0.14 2.48 3.08 -66.10 -0.20 2.27 16 13 H 0.12 2.34 7.01 -51.93 -0.36 1.98 16 14 C 0.13 2.66 6.88 -3.07 -0.02 2.64 16 15 N -0.60 -14.51 3.30 -169.93 -0.56 -15.07 16 16 C -0.33 -9.22 10.45 -15.06 -0.16 -9.38 16 17 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 18 C -0.02 -0.56 5.42 -17.43 -0.09 -0.66 16 19 N -0.92 -28.16 13.70 55.49 0.76 -27.40 16 20 Si 1.06 26.32 24.69 -169.99 -4.20 22.12 16 21 H -0.30 -6.78 6.51 56.52 0.37 -6.41 16 22 H -0.29 -6.85 6.17 56.52 0.35 -6.50 16 23 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 24 C 0.08 1.66 4.43 -2.41 -0.01 1.65 16 25 C 0.08 1.37 3.95 -24.46 -0.10 1.28 16 26 H 0.07 1.14 6.16 -51.93 -0.32 0.82 16 27 O -0.56 -9.00 13.47 -35.23 -0.47 -9.47 16 28 C -0.05 -0.60 9.67 -39.09 -0.38 -0.98 16 29 C 0.04 0.39 7.29 -84.00 -0.61 -0.22 16 30 N -0.60 -4.60 6.23 -8.03 -0.05 -4.65 16 31 H 0.42 1.81 8.96 -40.82 -0.37 1.44 16 32 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 34 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.14 1.31 5.57 -52.49 -0.29 1.01 16 37 H 0.06 0.65 6.77 -51.93 -0.35 0.30 16 38 H 0.08 0.75 6.04 -51.93 -0.31 0.44 16 39 H 0.08 0.96 6.15 -51.93 -0.32 0.64 16 40 H 0.04 0.76 7.07 -51.92 -0.37 0.39 16 41 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.26 7.99 8.73 -40.82 -0.36 7.63 16 43 H 0.04 1.00 5.73 -51.93 -0.30 0.70 16 44 H 0.07 1.46 5.87 -51.93 -0.30 1.15 16 45 H 0.38 4.32 9.12 45.56 0.42 4.73 16 46 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 366.23 15.07 5.52 5.52 Total: -1.00 -37.53 366.23 -8.51 -46.04 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -5.08 Total: 4.71 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -3.92 Total: 3.66 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: -0.44 Total: -62.35 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.39 Total: -19.70 kcal Atomic # 14 Polarization: 26.32 SS G_CDS: -4.20 Total: 22.12 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.53 -8.51 -46.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047581332.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.271 kcal (2) G-P(sol) polarization free energy of solvation -37.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds