Wall clock time and date at job start Wed Apr 1 2020 04:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34775 * 119.99534 * 2 1 4 4 O 1.21284 * 119.99945 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.00533 * 359.97438 * 3 2 1 6 6 S 1.80994 * 109.47648 * 179.97438 * 5 3 2 7 7 C 1.76203 * 100.00333 * 180.02562 * 6 5 3 8 8 H 1.08003 * 119.99528 * 359.97438 * 7 6 5 9 9 C 1.38798 * 119.99981 * 180.02562 * 7 6 5 10 10 N 1.31622 * 120.00262 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99698 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47147 * 60.00320 * 11 9 7 13 13 H 1.48499 * 109.46974 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.47643 * 300.00125 * 11 9 7 15 15 C 1.46493 * 120.00248 * 180.02562 * 2 1 3 16 16 H 1.09008 * 110.88799 * 183.88368 * 15 2 1 17 17 C 1.55129 * 110.94186 * 307.95566 * 15 2 1 18 18 N 1.47424 * 104.72385 * 155.28836 * 17 15 2 19 19 C 1.34778 * 125.64635 * 155.81776 * 18 17 15 20 20 O 1.21277 * 120.00182 * 354.08786 * 19 18 17 21 21 C 1.50698 * 119.99831 * 174.08196 * 19 18 17 22 22 C 1.52998 * 109.46976 * 175.79346 * 21 19 18 23 23 C 1.53004 * 109.46743 * 55.79540 * 21 19 18 24 24 C 1.52996 * 109.47425 * 295.79704 * 21 19 18 25 25 C 1.47017 * 108.70484 * 335.55479 * 18 17 15 26 26 C 1.54334 * 107.27035 * 1.28875 * 25 18 17 27 27 H 1.09003 * 110.71627 * 263.64993 * 26 25 18 28 28 O 1.42899 * 110.72190 * 140.55679 * 26 25 18 29 29 H 1.08996 * 109.47100 * 269.99527 * 1 2 3 30 30 H 1.09000 * 109.47367 * 30.00057 * 1 2 3 31 31 H 1.08999 * 109.46504 * 150.00189 * 1 2 3 32 32 H 1.08997 * 109.47581 * 300.00411 * 5 3 2 33 33 H 1.09003 * 109.46980 * 59.99967 * 5 3 2 34 34 H 0.97006 * 120.00431 * 179.97438 * 10 9 7 35 35 H 1.09003 * 110.49633 * 36.44699 * 17 15 2 36 36 H 1.09000 * 110.34371 * 274.05458 * 17 15 2 37 37 H 1.08998 * 109.47362 * 299.99891 * 22 21 19 38 38 H 1.09002 * 109.47070 * 180.02562 * 22 21 19 39 39 H 1.08995 * 109.47377 * 60.00529 * 22 21 19 40 40 H 1.09005 * 109.46525 * 163.95560 * 23 21 19 41 41 H 1.08998 * 109.46987 * 283.95160 * 23 21 19 42 42 H 1.08999 * 109.47238 * 43.95897 * 23 21 19 43 43 H 1.09003 * 109.46823 * 305.87630 * 24 21 19 44 44 H 1.08993 * 109.47420 * 65.87440 * 24 21 19 45 45 H 1.09001 * 109.46945 * 185.87813 * 24 21 19 46 46 H 1.08996 * 109.88254 * 120.69904 * 25 18 17 47 47 H 1.09001 * 109.88474 * 241.86938 * 25 18 17 48 48 H 0.96703 * 113.99918 * 61.44687 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3853 2.4723 -0.0006 6 16 2.5614 3.8481 0.0003 7 6 1.4413 5.2083 0.0002 8 1 0.3760 5.0305 -0.0007 9 6 1.9280 6.5081 0.0003 10 7 3.2262 6.7248 0.0009 11 14 0.7404 7.9500 -0.0005 12 1 -0.1153 7.8873 1.2116 13 1 1.5064 9.2222 0.0003 14 1 -0.1141 7.8870 -1.2134 15 6 2.1975 -1.2686 -0.0006 16 1 3.2718 -1.0972 0.0685 17 6 1.7031 -2.1949 1.1414 18 7 2.0281 -3.5585 0.6851 19 6 2.2158 -4.6295 1.4815 20 8 2.2266 -4.4945 2.6867 21 6 2.4120 -5.9948 0.8744 22 6 2.7060 -7.0080 1.9824 23 6 3.5875 -5.9535 -0.1041 24 6 1.1419 -6.4087 0.1286 25 6 2.1075 -3.5581 -0.7830 26 6 1.8485 -2.1118 -1.2554 27 1 0.8032 -1.9786 -1.5343 28 8 2.7078 -1.7747 -2.3462 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3632 -0.8900 -0.5138 32 1 0.7590 2.5299 -0.8907 33 1 0.7583 2.5302 0.8892 34 1 3.5664 7.6333 0.0006 35 1 0.6274 -2.0879 1.2809 36 1 2.2309 -1.9690 2.0679 37 1 3.6109 -6.7132 2.5137 38 1 2.8484 -7.9955 1.5433 39 1 1.8687 -7.0374 2.6795 40 1 3.9126 -6.9704 -0.3244 41 1 3.2753 -5.4640 -1.0266 42 1 4.4120 -5.3970 0.3416 43 1 0.2865 -6.3373 0.8004 44 1 0.9899 -5.7478 -0.7246 45 1 1.2445 -7.4360 -0.2212 46 1 3.0993 -3.8797 -1.1007 47 1 1.3496 -4.2241 -1.1954 48 1 2.5826 -2.3262 -3.1306 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048302712.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:11 Heat of formation + Delta-G solvation = -105.401152 kcal Electronic energy + Delta-G solvation = -28740.614671 eV Core-core repulsion = 24729.545601 eV Total energy + Delta-G solvation = -4011.069071 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.12382 -39.68103 -38.16713 -36.14606 -35.89838 -35.00234 -32.42599 -30.99940 -29.18321 -28.53633 -27.89911 -27.41628 -26.87088 -25.49747 -24.59154 -21.97397 -21.44102 -19.58404 -19.14970 -17.98636 -17.53581 -17.20067 -16.79999 -16.20109 -15.85596 -15.49230 -15.46496 -15.02812 -14.80112 -14.39072 -14.37691 -14.18988 -13.90905 -13.70592 -13.21887 -13.17237 -12.94311 -12.76147 -12.68605 -12.64545 -12.50163 -12.33290 -12.29004 -12.20386 -12.00397 -11.84128 -11.41204 -11.39303 -11.05282 -11.03869 -10.97518 -10.77052 -10.56880 -9.94052 -9.81842 -9.41588 -9.08703 -9.05491 -8.60602 -8.22842 -6.49898 -6.20937 -3.91828 2.28574 2.37837 2.89049 2.99373 3.23625 3.24781 3.29126 3.55620 3.68209 3.92608 4.14862 4.19613 4.20506 4.37585 4.39768 4.52335 4.74483 4.75258 4.79289 4.94937 5.01951 5.04825 5.08238 5.13911 5.16031 5.19275 5.33119 5.35525 5.37200 5.44273 5.45431 5.49734 5.54581 5.60333 5.64125 5.75405 5.77083 5.85385 5.88951 5.92225 6.11201 6.50829 7.07702 7.29173 7.42435 7.59419 7.80825 8.35173 8.50055 9.23964 10.86386 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.027838 B = 0.002129 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.571780 B =13147.499573 C =13290.984633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.614 5.614 3 C 0.538 3.462 4 O -0.507 6.507 5 C -0.149 4.149 6 S -0.060 6.060 7 C -0.536 4.536 8 H 0.072 0.928 9 C 0.074 3.926 10 N -0.867 5.867 11 Si 0.919 3.081 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.274 1.274 15 C 0.142 3.858 16 H 0.126 0.874 17 C 0.098 3.902 18 N -0.612 5.612 19 C 0.540 3.460 20 O -0.532 6.532 21 C -0.082 4.082 22 C -0.127 4.127 23 C -0.153 4.153 24 C -0.144 4.144 25 C 0.059 3.941 26 C 0.078 3.922 27 H 0.079 0.921 28 O -0.540 6.540 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.269 0.731 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.091 0.909 47 H 0.079 0.921 48 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.208 -28.967 -4.106 30.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.350 5.350 3 C 0.326 3.674 4 O -0.380 6.380 5 C -0.299 4.299 6 S 0.167 5.833 7 C -0.684 4.684 8 H 0.090 0.910 9 C -0.136 4.136 10 N -0.502 5.502 11 Si 0.745 3.255 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.199 1.199 15 C 0.036 3.964 16 H 0.144 0.856 17 C -0.026 4.026 18 N -0.348 5.348 19 C 0.329 3.671 20 O -0.408 6.408 21 C -0.086 4.086 22 C -0.185 4.185 23 C -0.210 4.210 24 C -0.201 4.201 25 C -0.064 4.064 26 C 0.017 3.983 27 H 0.097 0.903 28 O -0.345 6.345 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.089 0.911 46 H 0.109 0.891 47 H 0.097 0.903 48 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -5.019 -28.339 -2.969 28.933 hybrid contribution -2.555 0.490 -0.475 2.645 sum -7.574 -27.849 -3.445 29.065 Atomic orbital electron populations 1.21815 0.79636 1.03268 1.02085 1.47650 1.06627 1.04697 1.75988 1.20382 0.87973 0.84335 0.74702 1.90709 1.13738 1.86514 1.47010 1.23550 1.04586 0.96964 1.04801 1.85442 1.07923 0.93251 1.96705 1.22811 0.94256 0.92201 1.59124 0.90982 1.24991 0.95675 0.98371 0.94545 1.70006 1.11750 1.21774 1.46696 0.86225 0.80183 0.80311 0.78778 1.19941 1.20818 1.19947 1.22045 1.00100 0.83022 0.91267 0.85615 1.22583 1.01180 0.80246 0.98559 1.48161 1.70992 1.08911 1.06725 1.20364 0.75454 0.85032 0.86264 1.90724 1.50220 1.85505 1.14317 1.20773 0.97865 0.92275 0.97638 1.21680 1.02951 0.96826 0.97036 1.22152 0.96931 1.03234 0.98684 1.21967 0.95758 1.02255 1.00158 1.23292 1.03357 0.98453 0.81331 1.23280 0.94450 0.92035 0.88505 0.90326 1.86745 1.62011 1.61040 1.24662 0.92305 0.90083 0.91532 0.89133 0.89131 0.92115 0.90499 0.89024 0.91871 0.91850 0.91792 0.91190 0.91140 0.91913 0.92053 0.91731 0.91117 0.89059 0.90271 0.77501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 8.85 59.85 0.53 1.26 16 2 N -0.61 -8.47 2.91 -171.35 -0.50 -8.97 16 3 C 0.54 10.27 7.69 -10.99 -0.08 10.18 16 4 O -0.51 -11.78 15.24 5.55 0.08 -11.70 16 5 C -0.15 -3.00 4.71 36.00 0.17 -2.83 16 6 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 7 C -0.54 -15.23 9.50 30.94 0.29 -14.93 16 8 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 9 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 10 N -0.87 -26.23 13.22 55.49 0.73 -25.49 16 11 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 12 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 15 C 0.14 1.75 3.19 -65.67 -0.21 1.54 16 16 H 0.13 1.98 7.02 -51.92 -0.36 1.61 16 17 C 0.10 1.07 6.49 -2.41 -0.02 1.06 16 18 N -0.61 -5.89 3.32 -170.38 -0.57 -6.46 16 19 C 0.54 5.88 6.51 -10.99 -0.07 5.81 16 20 O -0.53 -7.95 16.21 5.56 0.09 -7.86 16 21 C -0.08 -0.60 0.75 -155.66 -0.12 -0.72 16 22 C -0.13 -0.94 7.71 37.16 0.29 -0.66 16 23 C -0.15 -0.88 7.68 37.16 0.29 -0.60 16 24 C -0.14 -0.74 8.27 37.16 0.31 -0.44 16 25 C 0.06 0.40 4.86 -3.06 -0.01 0.39 16 26 C 0.08 0.68 3.88 -24.89 -0.10 0.59 16 27 H 0.08 0.56 6.41 -51.93 -0.33 0.23 16 28 O -0.54 -5.41 13.39 -35.23 -0.47 -5.88 16 29 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 30 H 0.08 0.80 6.44 -51.93 -0.33 0.46 16 31 H 0.07 0.46 6.42 -51.93 -0.33 0.13 16 32 H 0.09 1.68 7.40 -51.92 -0.38 1.29 16 33 H 0.09 1.69 8.11 -51.91 -0.42 1.26 16 34 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.08 0.74 7.01 -51.93 -0.36 0.37 16 36 H 0.09 1.19 7.98 -51.93 -0.41 0.78 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 0.53 8.05 -51.93 -0.42 0.11 16 40 H 0.07 0.31 8.04 -51.93 -0.42 -0.11 16 41 H 0.07 0.32 4.98 -51.93 -0.26 0.06 16 42 H 0.06 0.45 8.03 -51.93 -0.42 0.04 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.27 5.14 -51.93 -0.27 0.00 16 45 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 46 H 0.09 0.58 5.63 -51.93 -0.29 0.29 16 47 H 0.08 0.34 5.60 -51.93 -0.29 0.05 16 48 H 0.38 1.73 9.11 45.56 0.42 2.15 16 LS Contribution 389.46 15.07 5.87 5.87 Total: -1.00 -38.27 389.46 -7.38 -45.65 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.55 Total: -0.32 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 1.17 Total: 2.65 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: -0.33 Total: -40.92 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.30 Total: -25.44 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.27 -7.38 -45.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048302712.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.755 kcal (2) G-P(sol) polarization free energy of solvation -38.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds