Wall clock time and date at job start Wed Apr 1 2020 04:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34775 * 119.99534 * 2 1 4 4 O 1.21284 * 119.99945 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.00533 * 359.97438 * 3 2 1 6 6 S 1.80994 * 109.47648 * 179.97438 * 5 3 2 7 7 C 1.76203 * 100.00333 * 180.02562 * 6 5 3 8 8 H 1.08003 * 119.99528 * 359.97438 * 7 6 5 9 9 C 1.38798 * 119.99981 * 180.02562 * 7 6 5 10 10 N 1.31622 * 120.00262 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99698 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47147 * 60.00320 * 11 9 7 13 13 H 1.48499 * 109.46974 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.47643 * 300.00125 * 11 9 7 15 15 C 1.46493 * 120.00248 * 180.02562 * 2 1 3 16 16 H 1.09008 * 110.88799 * 183.88368 * 15 2 1 17 17 C 1.55129 * 110.94186 * 307.95566 * 15 2 1 18 18 N 1.47424 * 104.72385 * 155.28836 * 17 15 2 19 19 C 1.34778 * 125.64635 * 155.81776 * 18 17 15 20 20 O 1.21277 * 120.00182 * 354.08786 * 19 18 17 21 21 C 1.50698 * 119.99831 * 174.08196 * 19 18 17 22 22 C 1.52998 * 109.46976 * 175.79346 * 21 19 18 23 23 C 1.53004 * 109.46743 * 55.79540 * 21 19 18 24 24 C 1.52996 * 109.47425 * 295.79704 * 21 19 18 25 25 C 1.47017 * 108.70484 * 335.55479 * 18 17 15 26 26 C 1.54334 * 107.27035 * 1.28875 * 25 18 17 27 27 H 1.09003 * 110.71627 * 263.64993 * 26 25 18 28 28 O 1.42899 * 110.72190 * 140.55679 * 26 25 18 29 29 H 1.08996 * 109.47100 * 269.99527 * 1 2 3 30 30 H 1.09000 * 109.47367 * 30.00057 * 1 2 3 31 31 H 1.08999 * 109.46504 * 150.00189 * 1 2 3 32 32 H 1.08997 * 109.47581 * 300.00411 * 5 3 2 33 33 H 1.09003 * 109.46980 * 59.99967 * 5 3 2 34 34 H 0.97006 * 120.00431 * 179.97438 * 10 9 7 35 35 H 1.09003 * 110.49633 * 36.44699 * 17 15 2 36 36 H 1.09000 * 110.34371 * 274.05458 * 17 15 2 37 37 H 1.08998 * 109.47362 * 299.99891 * 22 21 19 38 38 H 1.09002 * 109.47070 * 180.02562 * 22 21 19 39 39 H 1.08995 * 109.47377 * 60.00529 * 22 21 19 40 40 H 1.09005 * 109.46525 * 163.95560 * 23 21 19 41 41 H 1.08998 * 109.46987 * 283.95160 * 23 21 19 42 42 H 1.08999 * 109.47238 * 43.95897 * 23 21 19 43 43 H 1.09003 * 109.46823 * 305.87630 * 24 21 19 44 44 H 1.08993 * 109.47420 * 65.87440 * 24 21 19 45 45 H 1.09001 * 109.46945 * 185.87813 * 24 21 19 46 46 H 1.08996 * 109.88254 * 120.69904 * 25 18 17 47 47 H 1.09001 * 109.88474 * 241.86938 * 25 18 17 48 48 H 0.96703 * 113.99918 * 61.44687 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3853 2.4723 -0.0006 6 16 2.5614 3.8481 0.0003 7 6 1.4413 5.2083 0.0002 8 1 0.3760 5.0305 -0.0007 9 6 1.9280 6.5081 0.0003 10 7 3.2262 6.7248 0.0009 11 14 0.7404 7.9500 -0.0005 12 1 -0.1153 7.8873 1.2116 13 1 1.5064 9.2222 0.0003 14 1 -0.1141 7.8870 -1.2134 15 6 2.1975 -1.2686 -0.0006 16 1 3.2718 -1.0972 0.0685 17 6 1.7031 -2.1949 1.1414 18 7 2.0281 -3.5585 0.6851 19 6 2.2158 -4.6295 1.4815 20 8 2.2266 -4.4945 2.6867 21 6 2.4120 -5.9948 0.8744 22 6 2.7060 -7.0080 1.9824 23 6 3.5875 -5.9535 -0.1041 24 6 1.1419 -6.4087 0.1286 25 6 2.1075 -3.5581 -0.7830 26 6 1.8485 -2.1118 -1.2554 27 1 0.8032 -1.9786 -1.5343 28 8 2.7078 -1.7747 -2.3462 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3632 -0.8900 -0.5138 32 1 0.7590 2.5299 -0.8907 33 1 0.7583 2.5302 0.8892 34 1 3.5664 7.6333 0.0006 35 1 0.6274 -2.0879 1.2809 36 1 2.2309 -1.9690 2.0679 37 1 3.6109 -6.7132 2.5137 38 1 2.8484 -7.9955 1.5433 39 1 1.8687 -7.0374 2.6795 40 1 3.9126 -6.9704 -0.3244 41 1 3.2753 -5.4640 -1.0266 42 1 4.4120 -5.3970 0.3416 43 1 0.2865 -6.3373 0.8004 44 1 0.9899 -5.7478 -0.7246 45 1 1.2445 -7.4360 -0.2212 46 1 3.0993 -3.8797 -1.1007 47 1 1.3496 -4.2241 -1.1954 48 1 2.5826 -2.3262 -3.1306 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048302712.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:10 Heat of formation + Delta-G solvation = -135.857281 kcal Electronic energy + Delta-G solvation = -28741.935348 eV Core-core repulsion = 24729.545601 eV Total energy + Delta-G solvation = -4012.389748 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.96688 -40.85078 -39.19602 -36.88043 -36.72210 -36.10288 -34.58545 -32.14844 -30.16354 -29.57356 -28.29541 -28.10506 -27.77729 -27.61671 -25.44730 -22.66688 -22.45246 -20.65658 -20.01973 -19.67431 -18.76106 -18.09092 -17.73358 -17.22734 -16.88899 -16.84981 -16.76119 -16.43905 -15.89983 -15.55572 -15.13722 -15.00320 -14.95349 -14.58285 -14.51440 -14.41756 -14.04438 -13.66123 -13.59610 -13.47465 -13.25166 -13.23975 -13.15382 -13.10263 -13.04738 -12.86048 -12.85613 -12.62718 -12.50960 -11.99955 -11.92639 -11.76092 -11.69489 -11.26906 -11.12685 -10.94214 -10.72924 -10.27246 -9.97524 -9.64418 -8.68381 -8.34198 -6.13237 1.19691 1.40703 1.44301 1.48408 1.51010 1.53486 1.69840 2.11646 2.27474 2.96301 2.99772 3.19308 3.25946 3.45868 3.51638 3.70086 3.79385 3.88781 3.89432 4.03348 4.12156 4.17701 4.24494 4.27166 4.40178 4.45570 4.53908 4.59703 4.64580 4.67252 4.74266 4.78904 4.83533 4.88524 4.92922 4.97201 4.99003 5.04600 5.21856 5.32294 5.35727 5.41401 5.46430 6.15941 6.19984 6.32175 6.88093 6.99303 7.06458 7.08008 8.74845 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.027838 B = 0.002129 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.571780 B =13147.499573 C =13290.984633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.599 5.599 3 C 0.534 3.466 4 O -0.563 6.563 5 C -0.120 4.120 6 S -0.157 6.157 7 C -0.544 4.544 8 H 0.085 0.915 9 C 0.011 3.989 10 N -0.912 5.912 11 Si 1.000 3.000 12 H -0.262 1.262 13 H -0.280 1.280 14 H -0.260 1.260 15 C 0.132 3.868 16 H 0.082 0.918 17 C 0.105 3.895 18 N -0.611 5.611 19 C 0.532 3.468 20 O -0.585 6.585 21 C -0.078 4.078 22 C -0.128 4.128 23 C -0.151 4.151 24 C -0.140 4.140 25 C 0.063 3.937 26 C 0.090 3.910 27 H 0.109 0.891 28 O -0.570 6.570 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.271 0.729 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.041 0.959 38 H 0.091 0.909 39 H 0.049 0.951 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.040 0.960 43 H 0.051 0.949 44 H 0.081 0.919 45 H 0.092 0.908 46 H 0.098 0.902 47 H 0.121 0.879 48 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.738 -31.034 -6.181 33.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.332 5.332 3 C 0.322 3.678 4 O -0.441 6.441 5 C -0.271 4.271 6 S 0.070 5.930 7 C -0.692 4.692 8 H 0.103 0.897 9 C -0.193 4.193 10 N -0.549 5.549 11 Si 0.821 3.179 12 H -0.186 1.186 13 H -0.205 1.205 14 H -0.184 1.184 15 C 0.026 3.974 16 H 0.100 0.900 17 C -0.019 4.019 18 N -0.345 5.345 19 C 0.322 3.678 20 O -0.465 6.465 21 C -0.081 4.081 22 C -0.185 4.185 23 C -0.208 4.208 24 C -0.197 4.197 25 C -0.059 4.059 26 C 0.029 3.971 27 H 0.127 0.873 28 O -0.378 6.378 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.124 0.876 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.080 0.920 35 H 0.118 0.882 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.110 0.890 39 H 0.068 0.932 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.059 0.941 43 H 0.070 0.930 44 H 0.100 0.900 45 H 0.110 0.890 46 H 0.116 0.884 47 H 0.139 0.861 48 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -8.603 -30.470 -5.094 32.068 hybrid contribution -1.452 0.992 0.182 1.768 sum -10.055 -29.478 -4.911 31.530 Atomic orbital electron populations 1.22215 0.76464 1.05424 1.03781 1.47565 1.08434 1.03561 1.73682 1.20234 0.87279 0.85496 0.74808 1.90691 1.15983 1.87346 1.50087 1.23352 1.02618 0.94447 1.06657 1.85677 1.12818 0.97469 1.97049 1.23155 0.94621 0.92476 1.58937 0.89685 1.26165 0.97627 1.01781 0.93743 1.70187 1.14211 1.22510 1.47958 0.84983 0.77554 0.75749 0.79574 1.18644 1.20534 1.18419 1.22070 0.97742 0.82931 0.94629 0.90021 1.22402 1.01858 0.81049 0.96636 1.48241 1.70241 1.07912 1.08135 1.21190 0.74310 0.86463 0.85805 1.90697 1.52659 1.86388 1.16721 1.20846 0.99880 0.89559 0.97856 1.21702 1.01355 0.98401 0.97072 1.22170 0.95521 1.04446 0.98657 1.21978 0.93733 1.03920 1.00054 1.23489 1.05247 0.97958 0.79226 1.23229 0.95508 0.91649 0.86679 0.87344 1.86700 1.62695 1.62384 1.26043 0.90842 0.89775 0.87626 0.86909 0.87244 0.92023 0.88227 0.92333 0.93965 0.89047 0.93215 0.89157 0.89274 0.94123 0.92971 0.90037 0.88959 0.88447 0.86127 0.74649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.99 8.85 127.77 1.13 2.12 16 2 N -0.60 -15.94 2.91 -814.42 -2.37 -18.31 16 3 C 0.53 20.77 7.69 87.66 0.67 21.45 16 4 O -0.56 -27.81 15.24 -3.04 -0.05 -27.86 16 5 C -0.12 -4.82 4.71 71.23 0.34 -4.49 16 6 S -0.16 -8.92 20.57 -56.49 -1.16 -10.08 16 7 C -0.54 -31.18 9.50 67.95 0.65 -30.54 16 8 H 0.09 4.47 7.80 -2.91 -0.02 4.44 16 9 C 0.01 0.66 5.49 84.86 0.47 1.12 16 10 N -0.91 -56.71 13.22 21.65 0.29 -56.42 16 11 Si 1.00 43.65 29.55 68.60 2.03 45.67 16 12 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 13 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 14 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 15 C 0.13 3.21 3.19 46.46 0.15 3.36 16 16 H 0.08 2.76 7.02 -2.38 -0.02 2.75 16 17 C 0.10 2.25 6.49 86.93 0.56 2.82 16 18 N -0.61 -10.93 3.32 -811.35 -2.69 -13.62 16 19 C 0.53 11.33 6.51 87.66 0.57 11.90 16 20 O -0.59 -18.29 16.21 -3.02 -0.05 -18.34 16 21 C -0.08 -0.99 0.75 -52.93 -0.04 -1.03 16 22 C -0.13 -1.79 7.71 71.98 0.55 -1.23 16 23 C -0.15 -1.36 7.68 71.98 0.55 -0.81 16 24 C -0.14 -0.90 8.27 71.98 0.60 -0.30 16 25 C 0.06 0.64 4.86 86.73 0.42 1.06 16 26 C 0.09 1.31 3.88 31.79 0.12 1.43 16 27 H 0.11 0.97 6.41 -2.39 -0.02 0.96 16 28 O -0.57 -10.20 13.39 -148.98 -2.00 -12.19 16 29 H 0.07 1.03 8.09 -2.39 -0.02 1.01 16 30 H 0.08 1.35 6.44 -2.39 -0.02 1.33 16 31 H 0.11 0.90 6.42 -2.39 -0.02 0.89 16 32 H 0.11 4.02 7.40 -2.40 -0.02 4.00 16 33 H 0.11 3.97 8.11 -2.39 -0.02 3.95 16 34 H 0.27 15.66 8.31 -92.70 -0.77 14.89 16 35 H 0.10 1.69 7.01 -2.39 -0.02 1.67 16 36 H 0.06 1.64 7.98 -2.39 -0.02 1.62 16 37 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.05 0.83 8.05 -2.39 -0.02 0.81 16 40 H 0.09 0.48 8.04 -2.38 -0.02 0.46 16 41 H 0.09 0.45 4.98 -2.39 -0.01 0.44 16 42 H 0.04 0.56 8.03 -2.39 -0.02 0.54 16 43 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.08 0.23 5.14 -2.39 -0.01 0.21 16 45 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 46 H 0.10 0.93 5.63 -2.39 -0.01 0.92 16 47 H 0.12 0.32 5.60 -2.39 -0.01 0.31 16 48 H 0.40 2.37 9.11 -74.06 -0.67 1.70 16 Total: -1.00 -91.65 389.46 1.05 -90.60 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.31 Total: 13.68 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 6.74 Total: 6.87 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -4.78 Total: -88.35 kcal Atomic # 8 Polarization: -56.30 SS G_CDS: -2.09 Total: -58.39 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.16 Total: -10.08 kcal Total: -91.65 1.05 -90.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048302712.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.257 kcal (2) G-P(sol) polarization free energy of solvation -91.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds