Wall clock time and date at job start Wed Apr 1 2020 03:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30096 * 124.98261 * 2 1 4 4 C 1.35848 * 109.53274 * 180.10785 * 3 2 1 5 5 C 1.39723 * 133.50532 * 179.22394 * 4 3 2 6 6 C 1.37840 * 120.10986 * 179.97438 * 5 4 3 7 7 C 1.38326 * 120.72503 * 0.02562 * 6 5 4 8 8 C 1.39399 * 120.28366 * 359.97438 * 7 6 5 9 9 C 1.47532 * 120.25201 * 180.02562 * 8 7 6 10 10 O 1.21581 * 120.00195 * 179.97438 * 9 8 7 11 11 N 1.34784 * 119.99712 * 359.97438 * 9 8 7 12 12 C 1.46494 * 119.99939 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.46992 * 180.02562 * 12 11 9 14 14 H 1.09003 * 109.67884 * 300.21787 * 13 12 11 15 15 C 1.53294 * 109.67936 * 179.66682 * 13 12 11 16 16 O 1.42966 * 109.22365 * 187.97726 * 15 13 12 17 17 C 1.42961 * 114.16845 * 62.57368 * 16 15 13 18 18 C 1.53301 * 109.22271 * 297.42377 * 17 16 15 19 19 N 1.47148 * 109.68334 * 60.73672 * 13 12 11 20 20 C 1.36936 * 120.97865 * 349.98350 * 19 13 12 21 21 H 1.08000 * 120.00276 * 33.46141 * 20 19 13 22 22 C 1.38818 * 119.99840 * 213.45512 * 20 19 13 23 23 N 1.31620 * 119.99795 * 212.31142 * 22 20 19 24 24 Si 1.86798 * 119.99795 * 32.31556 * 22 20 19 25 25 H 1.48499 * 109.47454 * 85.49476 * 24 22 20 26 26 H 1.48505 * 109.47089 * 205.49842 * 24 22 20 27 27 H 1.48498 * 109.47138 * 325.49427 * 24 22 20 28 28 C 1.40190 * 119.50376 * 0.27333 * 8 7 6 29 29 N 1.36129 * 124.98053 * 179.32740 * 2 1 3 30 30 H 0.97002 * 126.30594 * 359.97438 * 29 2 1 31 31 H 1.08998 * 109.47122 * 270.67069 * 1 2 3 32 32 H 1.08993 * 109.46872 * 30.67407 * 1 2 3 33 33 H 1.09009 * 109.47042 * 150.66949 * 1 2 3 34 34 H 1.08005 * 119.94521 * 0.03158 * 5 4 3 35 35 H 1.07995 * 119.63840 * 180.02562 * 6 5 4 36 36 H 1.08001 * 119.85947 * 180.02562 * 7 6 5 37 37 H 0.96998 * 119.99651 * 359.97438 * 11 9 8 38 38 H 1.08998 * 109.46755 * 59.99907 * 12 11 9 39 39 H 1.09004 * 109.47144 * 300.00448 * 12 11 9 40 40 H 1.09003 * 109.51030 * 307.89193 * 15 13 12 41 41 H 1.08996 * 109.51684 * 67.99800 * 15 13 12 42 42 H 1.09002 * 109.51141 * 57.35016 * 17 16 15 43 43 H 1.08995 * 109.51375 * 177.50138 * 17 16 15 44 44 H 1.08993 * 109.68161 * 292.57953 * 18 17 16 45 45 H 1.08998 * 109.67924 * 172.02082 * 18 17 16 46 46 H 0.97004 * 119.99399 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2529 1.0659 0.0000 4 6 3.5622 0.7040 -0.0024 5 6 4.7593 1.4245 -0.0172 6 6 5.9667 0.7595 -0.0149 7 6 6.0121 -0.6229 0.0014 8 6 4.8321 -1.3649 0.0164 9 6 4.8814 -2.8393 0.0344 10 8 3.8494 -3.4819 0.0478 11 7 6.0705 -3.4738 0.0358 12 6 6.1195 -4.9378 0.0531 13 6 7.5782 -5.3993 0.0518 14 1 8.0798 -5.0282 -0.8420 15 6 7.6351 -6.9310 0.0782 16 8 8.9897 -7.3485 0.2642 17 6 9.5660 -6.9309 1.5040 18 6 9.6080 -5.3991 1.5505 19 7 8.2607 -4.8887 1.2513 20 6 7.6620 -3.9615 2.0619 21 1 6.5906 -3.9741 2.1972 22 6 8.4323 -3.0056 2.7099 23 7 8.0669 -2.5570 3.8921 24 14 9.9872 -2.3559 1.9039 25 1 9.6412 -1.2371 0.9909 26 1 10.9214 -1.8697 2.9509 27 1 10.6352 -3.4446 1.1293 28 6 3.5981 -0.6996 0.0089 29 7 2.2874 -1.1153 0.0131 30 1 1.9762 -2.0340 0.0242 31 1 -0.3633 0.0120 1.0276 32 1 -0.3633 0.8838 -0.5242 33 1 -0.3633 -0.8960 -0.5034 34 1 4.7385 2.5043 -0.0295 35 1 6.8873 1.3240 -0.0260 36 1 6.9659 -1.1295 0.0034 37 1 6.8938 -2.9610 0.0247 38 1 5.6135 -5.3286 -0.8296 39 1 5.6226 -5.3074 0.9502 40 1 7.0233 -7.3038 0.8997 41 1 7.2579 -7.3257 -0.8651 42 1 8.9612 -7.3038 2.3306 43 1 10.5788 -7.3254 1.5860 44 1 10.3143 -5.0285 0.8076 45 1 9.9129 -5.0702 2.5439 46 1 8.6050 -1.8887 4.3447 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051199905.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:44 Heat of formation + Delta-G solvation = 5.624233 kcal Electronic energy + Delta-G solvation = -30898.773759 eV Core-core repulsion = 26789.367910 eV Total energy + Delta-G solvation = -4109.405849 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -43.27071 -40.96621 -40.00221 -38.18532 -37.03910 -35.34691 -34.19253 -33.64939 -32.71760 -32.24515 -31.14316 -29.20576 -28.60573 -27.15127 -25.15876 -24.55691 -23.58533 -23.27325 -21.94130 -21.64539 -21.30302 -19.30552 -18.67348 -18.33842 -17.61467 -17.48999 -17.22881 -16.78267 -16.56780 -16.49927 -16.07710 -15.97360 -15.58172 -15.53547 -15.26477 -15.13894 -14.54750 -14.40829 -14.21483 -14.02618 -13.80570 -13.53039 -13.48822 -13.14437 -13.07455 -12.88953 -12.70856 -12.55003 -12.45081 -12.27824 -12.01294 -11.75225 -11.46270 -11.43956 -11.30547 -11.05753 -10.82501 -10.34388 -10.03014 -9.44191 -9.22370 -8.78273 -8.17453 -5.45945 -0.49217 0.39142 1.38906 1.41139 1.51353 1.55796 1.90672 2.02301 2.23402 2.50316 2.82159 2.86517 3.02103 3.09491 3.28464 3.55276 3.80293 3.86819 3.96813 4.12899 4.17315 4.19791 4.22934 4.33133 4.38294 4.45046 4.54654 4.55768 4.58886 4.69097 4.70528 4.76606 4.80811 4.90315 4.96515 5.02700 5.04271 5.21943 5.24243 5.33768 5.35063 5.47391 5.73827 5.88322 6.21540 6.24755 6.34551 6.56131 6.75682 6.89792 7.16205 7.62020 8.06961 9.00094 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014202 B = 0.003698 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.117479 B = 7570.183349 C = 8851.565345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.282 3.718 3 N -0.518 5.518 4 C 0.014 3.986 5 C -0.039 4.039 6 C -0.133 4.133 7 C -0.061 4.061 8 C -0.144 4.144 9 C 0.554 3.446 10 O -0.593 6.593 11 N -0.684 5.684 12 C 0.141 3.859 13 C 0.124 3.876 14 H 0.058 0.942 15 C 0.058 3.942 16 O -0.390 6.390 17 C 0.049 3.951 18 C 0.104 3.896 19 N -0.612 5.612 20 C -0.253 4.253 21 H 0.052 0.948 22 C 0.002 3.998 23 N -0.930 5.930 24 Si 0.882 3.118 25 H -0.277 1.277 26 H -0.313 1.313 27 H -0.227 1.227 28 C 0.077 3.923 29 N -0.585 5.585 30 H 0.434 0.566 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.159 0.841 35 H 0.165 0.835 36 H 0.133 0.867 37 H 0.410 0.590 38 H 0.087 0.913 39 H 0.044 0.956 40 H 0.046 0.954 41 H 0.123 0.877 42 H 0.043 0.957 43 H 0.114 0.886 44 H 0.045 0.955 45 H 0.057 0.943 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.494 1.274 -10.970 12.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.015 3.985 3 N -0.240 5.240 4 C -0.103 4.103 5 C -0.059 4.059 6 C -0.153 4.153 7 C -0.081 4.081 8 C -0.150 4.150 9 C 0.343 3.657 10 O -0.477 6.477 11 N -0.333 5.333 12 C 0.017 3.983 13 C 0.018 3.982 14 H 0.076 0.924 15 C -0.020 4.020 16 O -0.309 6.309 17 C -0.028 4.028 18 C -0.021 4.021 19 N -0.339 5.339 20 C -0.382 4.382 21 H 0.069 0.931 22 C -0.197 4.197 23 N -0.573 5.573 24 Si 0.708 3.292 25 H -0.203 1.203 26 H -0.241 1.241 27 H -0.151 1.151 28 C -0.037 4.037 29 N -0.197 5.197 30 H 0.276 0.724 31 H 0.122 0.878 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.176 0.824 35 H 0.182 0.818 36 H 0.151 0.849 37 H 0.248 0.752 38 H 0.105 0.895 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.141 0.859 42 H 0.061 0.939 43 H 0.132 0.868 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.320 1.645 -10.967 13.288 hybrid contribution 1.296 -0.273 0.762 1.528 sum -6.024 1.372 -10.204 11.929 Atomic orbital electron populations 1.20626 0.80392 1.06358 1.05763 1.24694 0.97629 0.80158 0.96030 1.70453 1.00391 1.28508 1.24663 1.19439 0.93322 0.89974 1.07586 1.20750 0.88334 1.01070 0.95699 1.21147 0.98837 0.93218 1.02114 1.21376 0.96199 0.95307 0.95212 1.18936 0.91750 0.92332 1.12019 1.18300 0.83792 0.87491 0.76129 1.90578 1.34247 1.68524 1.54365 1.45816 1.08068 1.07955 1.71443 1.21172 0.96254 0.79659 1.01176 1.21675 0.91543 0.94874 0.90060 0.92400 1.22967 0.83323 0.92977 1.02731 1.87835 1.27704 1.76322 1.39016 1.23108 0.99287 0.94637 0.85810 1.22176 0.86811 0.93711 0.99422 1.44514 1.16365 1.47185 1.25831 1.18510 0.92626 1.06804 1.20221 0.93071 1.25802 0.99994 0.98002 0.95913 1.70147 1.42170 1.32021 1.12924 0.86960 0.81726 0.81077 0.79393 1.20338 1.24057 1.15065 1.18781 0.85544 0.95159 1.04220 1.43209 1.04209 1.11146 1.61103 0.72441 0.87809 0.87240 0.87843 0.82369 0.81794 0.84890 0.75215 0.89489 0.93714 0.93599 0.85908 0.93877 0.86767 0.93710 0.92504 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.03 10.51 71.24 0.75 -0.28 16 2 C 0.28 7.42 8.08 137.90 1.11 8.54 16 3 N -0.52 -16.33 11.28 -179.95 -2.03 -18.36 16 4 C 0.01 0.49 7.22 39.41 0.28 0.77 16 5 C -0.04 -1.11 10.09 22.53 0.23 -0.89 16 6 C -0.13 -3.74 9.99 22.20 0.22 -3.52 16 7 C -0.06 -2.03 9.53 22.57 0.22 -1.82 16 8 C -0.14 -5.35 5.88 -20.07 -0.12 -5.47 16 9 C 0.55 21.93 7.76 86.69 0.67 22.60 16 10 O -0.59 -24.89 15.29 -3.97 -0.06 -24.95 16 11 N -0.68 -25.69 3.76 -466.29 -1.75 -27.44 16 12 C 0.14 4.91 4.45 86.38 0.38 5.30 16 13 C 0.12 4.18 3.21 44.97 0.14 4.33 16 14 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 15 C 0.06 1.71 6.29 72.08 0.45 2.16 16 16 O -0.39 -12.34 10.74 -148.98 -1.60 -13.94 16 17 C 0.05 1.57 6.99 72.08 0.50 2.07 16 18 C 0.10 3.93 4.56 86.36 0.39 4.33 16 19 N -0.61 -25.19 2.67 -673.74 -1.80 -26.99 16 20 C -0.25 -12.50 7.23 84.04 0.61 -11.89 16 21 H 0.05 2.90 6.13 -2.91 -0.02 2.88 16 22 C 0.00 0.08 4.91 84.86 0.42 0.50 16 23 N -0.93 -54.11 13.97 21.65 0.30 -53.80 16 24 Si 0.88 38.93 26.90 68.60 1.85 40.77 16 25 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 26 H -0.31 -14.71 7.11 99.48 0.71 -14.00 16 27 H -0.23 -9.07 4.46 99.48 0.44 -8.63 16 28 C 0.08 2.74 6.88 39.26 0.27 3.01 16 29 N -0.58 -17.83 6.00 -178.61 -1.07 -18.91 16 30 H 0.43 12.46 7.72 -92.71 -0.72 11.75 16 31 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.11 1.27 8.14 -2.39 -0.02 1.26 16 33 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.16 3.54 8.06 -2.91 -0.02 3.51 16 35 H 0.16 3.53 8.06 -2.91 -0.02 3.51 16 36 H 0.13 4.41 6.39 -2.91 -0.02 4.40 16 37 H 0.41 15.53 5.35 -92.71 -0.50 15.03 16 38 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.04 1.80 7.56 -2.39 -0.02 1.78 16 40 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.12 2.74 8.14 -2.39 -0.02 2.73 16 42 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 44 H 0.05 1.68 6.28 -2.39 -0.02 1.66 16 45 H 0.06 2.37 6.45 -2.39 -0.02 2.35 16 46 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -70.51 366.43 -0.06 -70.57 By element: Atomic # 1 Polarization: 43.75 SS G_CDS: -0.43 Total: 43.32 kcal Atomic # 6 Polarization: 23.19 SS G_CDS: 6.54 Total: 29.73 kcal Atomic # 7 Polarization: -139.15 SS G_CDS: -6.35 Total: -145.50 kcal Atomic # 8 Polarization: -37.23 SS G_CDS: -1.66 Total: -38.89 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 1.85 Total: 40.77 kcal Total: -70.51 -0.06 -70.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051199905.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.192 kcal (2) G-P(sol) polarization free energy of solvation -70.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds