Wall clock time and date at job start Wed Apr 1 2020 02:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34177 * 127.02596 * 2 1 4 4 O 1.34217 * 109.12869 * 179.97438 * 3 2 1 5 5 C 1.33650 * 110.90467 * 359.97438 * 4 3 2 6 6 C 1.36414 * 108.39933 * 359.75710 * 5 4 3 7 7 C 1.47385 * 127.19506 * 180.26144 * 6 5 4 8 8 O 1.21614 * 120.00161 * 204.08878 * 7 6 5 9 9 N 1.34776 * 119.99491 * 24.09712 * 7 6 5 10 10 C 1.48125 * 127.03085 * 185.28753 * 9 7 6 11 11 C 1.54590 * 103.42465 * 219.28276 * 10 9 7 12 12 H 1.08998 * 110.57380 * 81.16534 * 11 10 9 13 13 C 1.50701 * 110.83490 * 204.44747 * 11 10 9 14 14 C 1.34668 * 125.98903 * 28.27438 * 13 11 10 15 15 N 1.36882 * 106.81643 * 179.85020 * 14 13 11 16 16 C 1.46501 * 126.39467 * 180.12236 * 15 14 13 17 17 C 1.35043 * 107.20135 * 0.41477 * 15 14 13 18 18 N 1.30494 * 108.70084 * 359.73960 * 17 15 14 19 19 C 1.54620 * 102.91090 * 322.86569 * 11 10 9 20 20 H 1.08996 * 110.33060 * 262.80648 * 19 11 10 21 21 N 1.46503 * 110.32768 * 140.59034 * 19 11 10 22 22 C 1.36929 * 120.00187 * 157.92811 * 21 19 11 23 23 H 1.07996 * 119.99916 * 359.97438 * 22 21 19 24 24 C 1.38813 * 120.00283 * 180.02562 * 22 21 19 25 25 N 1.31625 * 119.99914 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00337 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.46940 * 59.99788 * 26 24 22 28 28 H 1.48501 * 109.47090 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.46906 * 299.99722 * 26 24 22 30 30 C 1.47481 * 127.04005 * 5.59569 * 9 7 6 31 31 H 1.09003 * 109.46964 * 90.02243 * 1 2 3 32 32 H 1.08997 * 109.47077 * 210.02842 * 1 2 3 33 33 H 1.09004 * 109.46983 * 330.02368 * 1 2 3 34 34 H 1.08002 * 125.43710 * 359.92656 * 3 2 1 35 35 H 1.08006 * 125.80177 * 180.02562 * 5 4 3 36 36 H 1.09003 * 110.65600 * 337.76882 * 10 9 7 37 37 H 1.09007 * 110.65894 * 100.87940 * 10 9 7 38 38 H 1.08004 * 126.59056 * 359.96797 * 14 13 11 39 39 H 1.08998 * 109.46704 * 270.31725 * 16 15 14 40 40 H 1.08992 * 109.47610 * 30.32156 * 16 15 14 41 41 H 1.09006 * 109.46720 * 150.32665 * 16 15 14 42 42 H 1.08000 * 125.64494 * 179.76253 * 17 15 14 43 43 H 0.97004 * 119.99672 * 337.92438 * 21 19 11 44 44 H 0.96992 * 120.00029 * 180.02562 * 25 24 22 45 45 H 1.08998 * 109.91285 * 273.88312 * 30 9 7 46 46 H 1.09001 * 109.90965 * 35.16188 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0712 0.0000 4 8 3.5922 0.6588 0.0006 5 6 3.6623 -0.6759 0.0015 6 6 2.3923 -1.1738 0.0071 7 6 1.9913 -2.5920 0.0153 8 8 0.8996 -2.9178 -0.4103 9 7 2.8344 -3.5278 0.4948 10 6 2.6400 -4.9962 0.4784 11 6 3.1905 -5.4464 1.8510 12 1 2.4457 -5.2924 2.6317 13 6 3.6288 -6.8876 1.8062 14 6 4.0732 -7.5461 0.7188 15 7 4.3640 -8.8221 1.1200 16 6 4.8818 -9.9019 0.2761 17 6 4.0782 -8.9015 2.4375 18 7 3.6391 -7.7408 2.8410 19 6 4.4041 -4.5114 2.0600 20 1 5.3246 -5.0133 1.7620 21 7 4.4848 -4.0874 3.4601 22 6 5.6759 -3.6513 3.9759 23 1 6.5560 -3.6203 3.3507 24 6 5.7524 -3.2501 5.3025 25 7 4.6799 -3.2884 6.0646 26 14 7.3775 -2.6558 6.0064 27 1 7.8420 -1.4684 5.2451 28 1 7.1941 -2.2888 7.4336 29 1 8.3884 -3.7385 5.9002 30 6 4.1365 -3.2992 1.1486 31 1 -0.3633 -0.0004 -1.0277 32 1 -0.3633 -0.8897 0.5143 33 1 -0.3633 0.8902 0.5135 34 1 1.9895 2.1010 -0.0011 35 1 4.5702 -1.2609 0.0025 36 1 1.5820 -5.2430 0.3895 37 1 3.2115 -5.4508 -0.3309 38 1 4.1813 -7.1441 -0.2778 39 1 4.0489 -10.4547 -0.1584 40 1 5.4925 -9.4789 -0.5213 41 1 5.4892 -10.5758 0.8804 42 1 4.1943 -9.7799 3.0549 43 1 3.6943 -4.1156 4.0216 44 1 4.7333 -3.0077 6.9915 45 1 4.9210 -3.2202 0.3960 46 1 4.0974 -2.3877 1.7450 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070521927.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:48 Heat of formation + Delta-G solvation = 74.070653 kcal Electronic energy + Delta-G solvation = -30269.586807 eV Core-core repulsion = 26163.149017 eV Total energy + Delta-G solvation = -4106.437789 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.43074 -41.90357 -39.48678 -37.32936 -34.08130 -33.92473 -33.70655 -32.04762 -30.77676 -30.15078 -28.21767 -27.45506 -27.09948 -26.65864 -24.68031 -23.35079 -22.18090 -21.03310 -20.77746 -20.31998 -19.38851 -19.06470 -17.48489 -17.13953 -16.77197 -16.17980 -15.94322 -15.59960 -15.38598 -15.25593 -14.62617 -14.32522 -14.08426 -13.88873 -13.69222 -13.36608 -13.28906 -13.07843 -13.01344 -12.95083 -12.76927 -12.72233 -12.35666 -12.12614 -11.87273 -11.56492 -11.42359 -11.18880 -10.80400 -10.74307 -10.47689 -10.11213 -9.76657 -9.70554 -9.57730 -9.36828 -9.32857 -8.99656 -8.56193 -8.39147 -8.11382 -6.95518 -5.74692 -3.04846 1.56450 2.14859 2.20231 2.88400 2.99167 3.21351 3.40670 3.44128 3.48423 3.50038 3.55286 4.55830 4.58039 4.64485 4.71045 4.75588 4.93341 4.94815 4.98261 5.11823 5.17135 5.22300 5.34459 5.39920 5.53875 5.59001 5.63179 5.75121 5.77448 5.79104 5.84087 5.91611 5.99161 6.04413 6.13591 6.25970 6.31475 6.39294 6.46435 6.51851 6.55943 6.90452 6.98254 7.08499 7.34021 7.68433 7.83813 8.38124 8.41819 8.44427 9.53787 10.09434 10.44278 11.47110 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.006935 B = 0.004523 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4036.313278 B = 6189.278001 C = 9368.745419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.135 4.135 3 C -0.051 4.051 4 O -0.173 6.173 5 C 0.026 3.974 6 C -0.227 4.227 7 C 0.606 3.394 8 O -0.547 6.547 9 N -0.611 5.611 10 C 0.120 3.880 11 C -0.028 4.028 12 H 0.096 0.904 13 C 0.039 3.961 14 C -0.066 4.066 15 N -0.468 5.468 16 C 0.076 3.924 17 C 0.177 3.823 18 N -0.470 5.470 19 C 0.185 3.815 20 H 0.065 0.935 21 N -0.707 5.707 22 C -0.246 4.246 23 H 0.069 0.931 24 C -0.006 4.006 25 N -0.926 5.926 26 Si 0.905 3.095 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.287 1.287 30 C 0.063 3.937 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.205 0.795 35 H 0.213 0.787 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.171 0.829 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.201 0.799 43 H 0.388 0.612 44 H 0.256 0.744 45 H 0.056 0.944 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.743 -4.513 -16.324 17.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.137 4.137 3 C -0.117 4.117 4 O -0.068 6.068 5 C -0.044 4.044 6 C -0.231 4.231 7 C 0.397 3.603 8 O -0.426 6.426 9 N -0.344 5.344 10 C -0.004 4.004 11 C -0.049 4.049 12 H 0.115 0.885 13 C -0.091 4.091 14 C -0.198 4.198 15 N -0.152 5.152 16 C -0.067 4.067 17 C -0.105 4.105 18 N -0.187 5.187 19 C 0.072 3.928 20 H 0.083 0.917 21 N -0.347 5.347 22 C -0.377 4.377 23 H 0.087 0.913 24 C -0.203 4.203 25 N -0.573 5.573 26 Si 0.735 3.265 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.213 1.213 30 C -0.063 4.063 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.221 0.779 35 H 0.230 0.770 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.188 0.812 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.218 0.782 43 H 0.223 0.777 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.154 -4.297 -15.776 16.492 hybrid contribution 1.058 -0.120 -0.077 1.067 sum -1.096 -4.417 -15.853 16.493 Atomic orbital electron populations 1.20149 0.88566 1.02744 1.02284 1.21361 0.97081 0.90470 1.04767 1.23634 0.79916 0.99522 1.08605 1.83787 1.29479 1.22546 1.71014 1.24737 0.99172 0.80759 0.99723 1.21283 0.93365 0.93995 1.14445 1.16831 0.83119 0.83230 0.77164 1.90736 1.21125 1.81912 1.48873 1.48581 1.21045 1.06403 1.58355 1.22323 1.01910 0.79551 0.96584 1.20720 0.98906 0.88182 0.97068 0.88533 1.20180 1.04459 0.95474 0.89024 1.22345 1.11261 0.85171 1.01016 1.45366 1.49411 1.10421 1.10051 1.21964 0.99911 0.89387 0.95428 1.24995 1.03971 0.99124 0.82451 1.70233 1.18614 0.99832 1.30071 1.21042 0.95089 0.89869 0.86834 0.91672 1.42415 1.10653 1.76642 1.05016 1.19130 0.88328 1.36122 0.94150 0.91265 1.24735 0.97030 1.02008 0.96525 1.69661 1.27379 1.53140 1.07084 0.86322 0.83415 0.78537 0.78183 1.21239 1.21704 1.21326 1.23715 0.82642 1.04114 0.95796 0.91254 0.90681 0.91813 0.77871 0.77047 0.89822 0.91187 0.81196 0.90886 0.89923 0.89670 0.78203 0.77740 0.93380 0.92616 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 9.97 36.01 0.36 -0.67 16 2 C -0.13 -1.95 6.37 -102.49 -0.65 -2.60 16 3 C -0.05 -0.62 11.96 29.30 0.35 -0.27 16 4 O -0.17 -2.37 10.52 7.65 0.08 -2.29 16 5 C 0.03 0.37 10.37 30.07 0.31 0.68 16 6 C -0.23 -3.65 5.99 -103.27 -0.62 -4.27 16 7 C 0.61 10.80 7.84 -12.54 -0.10 10.70 16 8 O -0.55 -10.95 16.26 5.27 0.09 -10.86 16 9 N -0.61 -10.05 3.29 -171.25 -0.56 -10.62 16 10 C 0.12 1.81 6.38 -2.31 -0.01 1.79 16 11 C -0.03 -0.48 3.28 -90.08 -0.30 -0.78 16 12 H 0.10 1.94 7.74 -51.93 -0.40 1.54 16 13 C 0.04 0.65 6.04 -82.86 -0.50 0.15 16 14 C -0.07 -0.87 10.68 -16.56 -0.18 -1.05 16 15 N -0.47 -5.36 3.15 -125.99 -0.40 -5.76 16 16 C 0.08 0.47 11.18 59.85 0.67 1.14 16 17 C 0.18 2.43 12.56 -90.38 -1.14 1.29 16 18 N -0.47 -8.63 11.25 -10.88 -0.12 -8.75 16 19 C 0.18 3.53 3.21 -66.55 -0.21 3.32 16 20 H 0.07 1.26 7.81 -51.93 -0.41 0.86 16 21 N -0.71 -17.34 5.07 -52.09 -0.26 -17.60 16 22 C -0.25 -6.62 9.97 -15.06 -0.15 -6.77 16 23 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 24 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 25 N -0.93 -27.98 13.06 55.49 0.72 -27.25 16 26 Si 0.90 22.15 29.55 -169.99 -5.02 17.13 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 30 C 0.06 1.05 5.08 -2.98 -0.02 1.04 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.11 7.58 -51.93 -0.39 0.72 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.20 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.21 2.51 6.05 -52.48 -0.32 2.19 16 36 H 0.08 1.31 7.81 -51.93 -0.41 0.90 16 37 H 0.07 0.88 6.39 -51.92 -0.33 0.54 16 38 H 0.17 1.74 6.91 -52.48 -0.36 1.38 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.20 1.98 8.06 -52.49 -0.42 1.55 16 43 H 0.39 10.53 7.54 -40.82 -0.31 10.22 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.06 0.77 7.48 -51.93 -0.39 0.38 16 46 H 0.09 1.68 6.68 -51.93 -0.35 1.34 16 LS Contribution 384.84 15.07 5.80 5.80 Total: -1.00 -36.52 384.84 -8.13 -44.65 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -6.17 Total: 12.14 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -2.28 Total: 3.43 kcal Atomic # 7 Polarization: -69.36 SS G_CDS: -0.62 Total: -69.98 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.17 Total: -13.16 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.52 -8.13 -44.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070521927.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.717 kcal (2) G-P(sol) polarization free energy of solvation -36.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds